Wall clock time and date at job start Mon Mar 30 2020 04:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35953 * 116.99645 * 2 1 4 4 C 1.38564 * 120.08776 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.01453 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.17984 * 0.02562 * 5 4 3 7 7 C 1.38154 * 120.17365 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00891 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47526 * 265.00520 * 8 7 6 10 10 H 1.08996 * 109.46929 * 54.99053 * 9 8 7 11 11 C 1.52997 * 109.47317 * 174.99949 * 9 8 7 12 12 N 1.46906 * 109.46507 * 294.99912 * 9 8 7 13 13 C 1.38758 * 119.98656 * 0.25781 * 7 6 5 14 14 O 1.35800 * 120.09000 * 179.70261 * 13 7 6 15 15 C 1.34800 * 117.00168 * 89.99984 * 14 13 7 16 16 H 1.07998 * 120.00520 * 359.97438 * 15 14 13 17 17 C 1.38643 * 119.99766 * 179.97438 * 15 14 13 18 18 N 1.31570 * 120.00400 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99936 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47366 * 59.99927 * 19 17 15 21 21 H 1.48506 * 109.47282 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46888 * 299.99717 * 19 17 15 23 23 H 1.08999 * 109.47522 * 299.99758 * 1 2 3 24 24 H 1.09008 * 109.46869 * 60.00095 * 1 2 3 25 25 H 1.09002 * 109.46873 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.98972 * 359.97438 * 4 3 2 27 27 H 1.07992 * 119.90831 * 180.02562 * 5 4 3 28 28 H 1.08003 * 119.90984 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47385 * 144.99872 * 8 7 6 30 30 H 1.09006 * 109.46618 * 25.00547 * 8 7 6 31 31 H 1.09002 * 109.47153 * 299.99641 * 11 9 8 32 32 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 33 33 H 1.09004 * 109.47261 * 59.99813 * 11 9 8 34 34 H 1.00901 * 111.00228 * 56.04511 * 12 9 8 35 35 H 1.00906 * 110.99709 * 179.97438 * 12 9 8 36 36 H 0.97000 * 120.00367 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2932 2.3746 0.0005 5 6 1.9223 3.6056 0.0011 6 6 3.3035 3.6806 0.0005 7 6 4.0616 2.5257 -0.0011 8 6 5.5662 2.6118 -0.0022 9 6 6.0814 2.5168 -1.4397 10 1 5.6017 3.2827 -2.0490 11 6 7.5966 2.7288 -1.4535 12 7 5.7677 1.1894 -1.9855 13 6 3.4375 1.2864 -0.0076 14 8 4.1807 0.1498 -0.0152 15 6 4.5173 -0.3695 1.1823 16 1 4.1970 0.1176 2.0915 17 6 5.2746 -1.5289 1.2470 18 7 5.6645 -2.1227 0.1395 19 14 5.7404 -2.2490 2.9065 20 1 4.5080 -2.5828 3.6648 21 1 6.5460 -3.4799 2.7035 22 1 6.5382 -1.2563 3.6704 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2146 2.3195 0.0005 27 1 1.3338 4.5110 0.0019 28 1 3.7904 4.6446 0.0014 29 1 5.9775 1.7916 0.5862 30 1 5.8760 3.5621 0.4328 31 1 7.8294 3.7136 -1.0485 32 1 7.9637 2.6606 -2.4776 33 1 8.0763 1.9627 -0.8442 34 1 4.7784 0.9993 -1.9278 35 1 6.0977 1.1017 -2.9350 36 1 6.1941 -2.9341 0.1847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037727703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:51 Heat of formation + Delta-G solvation = -37.218441 kcal Electronic energy + Delta-G solvation = -19228.875784 eV Core-core repulsion = 16293.407289 eV Total energy + Delta-G solvation = -2935.468495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75590 -37.58227 -35.95113 -35.33215 -31.71622 -30.65753 -28.99196 -28.41880 -26.86218 -25.73391 -24.43748 -21.54209 -21.03124 -19.52010 -17.83254 -17.01304 -16.07989 -15.96506 -15.13283 -14.80487 -14.73296 -14.43859 -13.93616 -13.64491 -13.46063 -12.92417 -12.40856 -12.05832 -11.71667 -11.58215 -11.42019 -11.26808 -11.11962 -10.91575 -10.87355 -10.71827 -10.46109 -10.31836 -10.23925 -9.79222 -9.39649 -7.96048 -7.95216 -7.57298 -7.28417 -5.81109 -3.48307 1.90219 2.04984 3.38335 3.40566 3.42724 3.91029 4.21175 4.51146 5.23754 5.26195 5.30675 5.41134 5.48579 5.49808 5.51720 5.60219 5.80098 5.80386 5.88930 5.92602 6.02334 6.08020 6.25846 6.38883 6.47486 6.70707 6.77933 6.84146 6.94066 7.06032 7.20423 7.50556 7.59189 8.07894 8.14713 8.44560 8.54934 9.60200 10.32413 11.36381 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.011142 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.496378 B = 2512.340713 C = 3814.043940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.289 6.289 3 C 0.093 3.907 4 C -0.211 4.211 5 C -0.114 4.114 6 C -0.150 4.150 7 C -0.085 4.085 8 C -0.069 4.069 9 C 0.102 3.898 10 H 0.015 0.985 11 C -0.141 4.141 12 N -0.816 5.816 13 C 0.114 3.886 14 O -0.204 6.204 15 C -0.356 4.356 16 H 0.059 0.941 17 C 0.036 3.964 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.279 1.279 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.352 0.648 35 H 0.321 0.679 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 9.895 -1.797 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.201 6.201 3 C 0.047 3.953 4 C -0.230 4.230 5 C -0.133 4.133 6 C -0.168 4.168 7 C -0.085 4.085 8 C -0.107 4.107 9 C -0.010 4.010 10 H 0.033 0.967 11 C -0.199 4.199 12 N -0.350 5.350 13 C 0.067 3.933 14 O -0.116 6.116 15 C -0.433 4.433 16 H 0.076 0.924 17 C -0.164 4.164 18 N -0.508 5.508 19 Si 0.746 3.254 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.205 1.205 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.132 0.868 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.546 9.142 -1.426 10.310 hybrid contribution -0.884 0.460 0.324 1.048 sum -5.430 9.602 -1.101 11.086 Atomic orbital electron populations 1.22962 0.80518 1.03186 1.00207 1.86356 1.19274 1.26189 1.88310 1.19990 0.92762 0.84236 0.98354 1.21020 0.99136 0.92412 1.10462 1.20635 0.94395 0.96302 1.01939 1.20758 0.93506 0.97304 1.05225 1.20225 0.96414 0.91840 1.00060 1.20558 0.90409 1.02511 0.97211 1.21111 0.94815 0.90366 0.94687 0.96717 1.21794 0.95806 1.00975 1.01328 1.58569 1.24239 1.27678 1.24485 1.18436 0.86792 0.89383 0.98669 1.83987 1.66143 1.33192 1.28305 1.20626 1.33007 1.08010 0.81694 0.92356 1.24833 0.97833 0.96327 0.97380 1.70041 1.36752 1.18638 1.25327 0.86157 0.78338 0.78567 0.82324 1.20580 1.20972 1.20476 0.93514 0.93566 0.88838 0.86412 0.86882 0.86847 0.88023 0.92135 0.93214 0.93457 0.91455 0.83093 0.86763 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.29 -6.28 10.28 -34.02 -0.35 -6.63 16 3 C 0.09 1.99 6.70 -39.05 -0.26 1.73 16 4 C -0.21 -3.68 9.04 -39.46 -0.36 -4.04 16 5 C -0.11 -1.84 10.04 -39.55 -0.40 -2.24 16 6 C -0.15 -2.56 9.67 -39.58 -0.38 -2.94 16 7 C -0.08 -1.71 4.88 -104.46 -0.51 -2.22 16 8 C -0.07 -1.35 4.80 -27.88 -0.13 -1.48 16 9 C 0.10 1.83 3.42 -67.71 -0.23 1.60 16 10 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 11 C -0.14 -2.21 9.49 37.16 0.35 -1.86 16 12 N -0.82 -16.94 8.57 -4.67 -0.04 -16.98 16 13 C 0.11 2.67 4.41 -38.98 -0.17 2.50 16 14 O -0.20 -5.64 6.87 -14.45 -0.10 -5.74 16 15 C -0.36 -10.32 9.02 30.88 0.28 -10.05 16 16 H 0.06 1.67 7.76 -52.49 -0.41 1.26 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.87 -26.58 13.67 55.48 0.76 -25.83 16 19 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 24 H 0.05 0.60 7.66 -51.92 -0.40 0.20 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.12 1.70 6.30 -52.48 -0.33 1.37 16 27 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.10 2.36 7.01 -51.93 -0.36 2.00 16 30 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.35 7.99 5.84 -39.29 -0.23 7.76 16 35 H 0.32 5.84 9.04 -39.29 -0.36 5.48 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -32.66 301.50 -6.12 -38.78 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.99 Total: 11.19 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.92 Total: -16.64 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.72 Total: -42.81 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.45 Total: -12.38 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.66 -6.12 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037727703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.566 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds