Wall clock time and date at job start Mon Mar 30 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35943 * 117.00475 * 2 1 4 4 C 1.38567 * 120.08193 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.00942 * 180.02562 * 4 3 2 6 6 C 1.38321 * 120.18616 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.91627 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47450 * 90.00133 * 7 6 5 9 9 H 1.09009 * 109.47230 * 304.99869 * 8 7 6 10 10 C 1.52995 * 109.47682 * 185.00199 * 8 7 6 11 11 N 1.46899 * 109.47609 * 64.99683 * 8 7 6 12 12 C 1.38165 * 120.16930 * 0.25112 * 6 5 4 13 13 C 1.38762 * 119.98391 * 359.45679 * 12 6 5 14 14 O 1.35795 * 120.09204 * 180.29344 * 13 12 6 15 15 C 1.34817 * 116.99965 * 354.40263 * 14 13 12 16 16 H 1.08000 * 119.99776 * 5.05956 * 15 14 13 17 17 C 1.38637 * 120.00113 * 185.06579 * 15 14 13 18 18 N 1.31569 * 120.00226 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99942 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46871 * 89.99909 * 19 17 15 21 21 H 1.48488 * 109.47288 * 210.00094 * 19 17 15 22 22 H 1.48503 * 109.47238 * 330.00459 * 19 17 15 23 23 H 1.08993 * 109.47772 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46876 * 299.99617 * 1 2 3 25 25 H 1.09004 * 109.47306 * 59.99184 * 1 2 3 26 26 H 1.07997 * 119.99608 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.90687 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47120 * 329.99957 * 7 6 5 29 29 H 1.09001 * 109.47423 * 210.00148 * 7 6 5 30 30 H 1.09000 * 109.47243 * 299.99888 * 10 8 7 31 31 H 1.08997 * 109.47484 * 179.97438 * 10 8 7 32 32 H 1.08999 * 109.47205 * 59.99307 * 10 8 7 33 33 H 1.00902 * 111.00133 * 296.05201 * 11 8 7 34 34 H 1.00903 * 110.99512 * 60.00256 * 11 8 7 35 35 H 1.08003 * 120.00545 * 179.72733 * 12 6 5 36 36 H 0.96998 * 119.99810 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2933 2.3745 0.0005 5 6 1.9226 3.6053 0.0000 6 6 3.3037 3.6804 -0.0016 7 6 3.9834 5.0253 -0.0028 8 6 4.2151 5.4810 1.4393 9 1 3.2683 5.4729 1.9795 10 6 4.7905 6.8986 1.4401 11 7 5.1608 4.5683 2.0953 12 6 4.0619 2.5253 -0.0079 13 6 3.4376 1.2860 -0.0013 14 8 4.1806 0.1494 -0.0014 15 6 5.5156 0.2909 -0.1254 16 1 5.9553 1.2772 -0.1365 17 6 6.3239 -0.8298 -0.2387 18 7 7.6267 -0.6918 -0.3602 19 14 5.5633 -2.5359 -0.2189 20 1 5.2272 -2.9441 -1.6067 21 1 6.5301 -3.5022 0.3609 22 1 4.3276 -2.5175 0.6045 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 0.2147 2.3195 0.0005 27 1 1.3341 4.5109 0.0008 28 1 3.3523 5.7508 -0.5161 29 1 4.9410 4.9482 -0.5177 30 1 5.7372 6.9068 0.9000 31 1 4.9551 7.2234 2.4675 32 1 4.0887 7.5759 0.9533 33 1 4.7763 3.6380 2.1652 34 1 6.0470 4.5580 1.6130 35 1 5.1401 2.5870 -0.0136 36 1 8.1922 -1.4759 -0.4391 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037728108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:54 Heat of formation + Delta-G solvation = -48.648206 kcal Electronic energy + Delta-G solvation = -18591.437575 eV Core-core repulsion = 15655.473448 eV Total energy + Delta-G solvation = -2935.964127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86322 -37.80194 -37.34638 -35.26519 -32.39767 -30.46300 -29.55782 -28.84089 -27.26370 -25.68532 -24.94531 -21.58664 -21.25402 -20.09527 -18.02498 -17.76083 -16.37700 -15.78155 -15.54075 -15.31033 -14.59176 -14.09309 -13.98871 -13.86727 -13.70139 -13.55067 -13.22493 -12.51785 -12.28458 -12.07257 -11.80131 -11.70871 -11.51346 -11.40214 -10.93559 -10.84017 -10.67544 -10.50888 -10.35491 -10.18857 -9.49209 -8.87682 -8.45202 -7.96339 -7.10055 -6.42032 -4.06581 1.96239 2.13735 3.24949 3.29095 3.47615 3.84926 4.27246 4.32032 4.72905 4.86017 5.02259 5.09728 5.20824 5.30961 5.41178 5.42638 5.56397 5.61637 5.67459 5.72800 5.78867 5.92603 6.00930 6.12863 6.19700 6.25691 6.34041 6.51387 6.85831 6.90899 7.23323 7.43346 7.48587 7.62384 7.76962 7.91413 8.09610 8.93593 9.56514 10.65091 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.008158 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.121982 B = 3431.194437 C = 4892.809429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.309 6.309 3 C 0.054 3.946 4 C -0.165 4.165 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.110 4.110 8 C 0.092 3.908 9 H 0.077 0.923 10 C -0.143 4.143 11 N -0.845 5.845 12 C -0.198 4.198 13 C 0.142 3.858 14 O -0.204 6.204 15 C -0.388 4.388 16 H 0.105 0.895 17 C 0.065 3.935 18 N -0.878 5.878 19 Si 0.903 3.097 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.256 1.256 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.350 0.650 34 H 0.338 0.662 35 H 0.137 0.863 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 8.490 1.000 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.223 6.223 3 C 0.009 3.991 4 C -0.184 4.184 5 C -0.185 4.185 6 C -0.073 4.073 7 C -0.149 4.149 8 C -0.020 4.020 9 H 0.095 0.905 10 C -0.201 4.201 11 N -0.375 5.375 12 C -0.217 4.217 13 C 0.090 3.910 14 O -0.109 6.109 15 C -0.464 4.464 16 H 0.122 0.878 17 C -0.138 4.138 18 N -0.515 5.515 19 Si 0.729 3.271 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.180 1.180 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.105 8.418 1.646 13.254 hybrid contribution -0.402 -1.078 -1.063 1.566 sum -10.507 7.340 0.583 12.830 Atomic orbital electron populations 1.22899 0.80136 1.02954 1.00474 1.86169 1.19673 1.26708 1.89778 1.18241 0.89443 0.84558 1.06854 1.20716 0.98626 0.91730 1.07349 1.20278 0.93569 0.96128 1.08510 1.19409 0.93250 0.93990 1.00675 1.21386 1.00555 0.94263 0.98680 1.21400 0.96279 0.92604 0.91705 0.90473 1.21805 1.00707 0.95551 1.02025 1.59041 1.06599 1.14831 1.57046 1.20896 1.00617 0.90293 1.09927 1.18354 0.87691 0.87163 0.97813 1.83670 1.20072 1.26967 1.80210 1.20740 0.77431 0.96775 1.51424 0.87789 1.24433 0.94503 0.99425 0.95454 1.69650 1.02965 1.31666 1.47260 0.86194 0.79707 0.81869 0.79346 1.19934 1.20862 1.17976 0.89081 0.93414 0.93439 0.86245 0.87257 0.91279 0.91379 0.92855 0.92116 0.92602 0.83593 0.84996 0.84546 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -6.26 10.28 -34.00 -0.35 -6.61 16 3 C 0.05 1.12 6.70 -39.05 -0.26 0.86 16 4 C -0.17 -2.83 9.04 -39.46 -0.36 -3.19 16 5 C -0.17 -2.72 9.69 -39.55 -0.38 -3.10 16 6 C -0.07 -1.26 4.72 -104.62 -0.49 -1.75 16 7 C -0.11 -1.55 4.99 -27.89 -0.14 -1.69 16 8 C 0.09 1.23 3.40 -67.72 -0.23 1.00 16 9 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 10 C -0.14 -1.60 9.49 37.15 0.35 -1.24 16 11 N -0.85 -12.70 9.12 -4.67 -0.04 -12.74 16 12 C -0.20 -4.10 7.52 -39.41 -0.30 -4.40 16 13 C 0.14 3.33 6.66 -38.98 -0.26 3.07 16 14 O -0.20 -5.50 8.37 -14.49 -0.12 -5.62 16 15 C -0.39 -10.90 9.95 30.88 0.31 -10.59 16 16 H 0.10 2.93 5.44 -52.49 -0.29 2.64 16 17 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 18 N -0.88 -25.25 13.96 55.48 0.77 -24.47 16 19 Si 0.90 22.18 28.62 -169.99 -4.86 17.31 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 26 H 0.12 1.68 6.30 -52.49 -0.33 1.34 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.35 5.89 7.33 -39.29 -0.29 5.60 16 34 H 0.34 4.93 9.00 -39.29 -0.35 4.58 16 35 H 0.14 2.95 5.64 -52.48 -0.30 2.66 16 36 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 301.41 15.07 4.54 4.54 Total: -1.00 -30.01 301.41 -5.79 -35.80 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.86 Total: 9.66 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.87 Total: -17.88 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.73 Total: -37.21 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.47 Total: -12.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.01 -5.79 -35.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037728108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.852 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds