Wall clock time and date at job start Mon Mar 30 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35952 * 116.99768 * 2 1 4 4 C 1.38569 * 120.08486 * 359.97438 * 3 2 1 5 5 C 1.38236 * 120.00777 * 180.22644 * 4 3 2 6 6 C 1.38322 * 120.18733 * 359.50047 * 5 4 3 7 7 C 1.50701 * 119.91628 * 180.25098 * 6 5 4 8 8 C 1.52993 * 109.47289 * 270.25160 * 7 6 5 9 9 H 1.08998 * 109.47356 * 54.99990 * 8 7 6 10 10 C 1.53003 * 109.47239 * 174.99822 * 8 7 6 11 11 N 1.46902 * 109.47132 * 295.00133 * 8 7 6 12 12 C 1.38158 * 120.17096 * 0.49975 * 6 5 4 13 13 C 1.38760 * 119.97952 * 359.75333 * 12 6 5 14 14 O 1.35809 * 120.08534 * 180.02562 * 13 12 6 15 15 C 1.34801 * 117.00141 * 354.40363 * 14 13 12 16 16 H 1.07996 * 120.00040 * 5.06415 * 15 14 13 17 17 C 1.38644 * 119.99960 * 185.05943 * 15 14 13 18 18 N 1.31566 * 119.99806 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99907 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47238 * 89.99645 * 19 17 15 21 21 H 1.48497 * 109.46811 * 209.99489 * 19 17 15 22 22 H 1.48502 * 109.46959 * 329.99728 * 19 17 15 23 23 H 1.08994 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47067 * 300.00130 * 1 2 3 25 25 H 1.09005 * 109.47158 * 59.99815 * 1 2 3 26 26 H 1.07991 * 119.99123 * 359.95941 * 4 3 2 27 27 H 1.08000 * 119.90329 * 179.72437 * 5 4 3 28 28 H 1.09004 * 109.46661 * 30.25205 * 7 6 5 29 29 H 1.09000 * 109.47075 * 150.24505 * 7 6 5 30 30 H 1.09003 * 109.46973 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.46990 * 299.99890 * 10 8 7 32 32 H 1.08998 * 109.46809 * 59.99833 * 10 8 7 33 33 H 1.00898 * 111.00264 * 180.02562 * 11 8 7 34 34 H 1.00901 * 110.99701 * 303.94953 * 11 8 7 35 35 H 1.07993 * 120.00892 * 179.76923 * 12 6 5 36 36 H 0.97000 * 120.00067 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2932 2.3746 -0.0005 5 6 1.9223 3.6055 -0.0053 6 6 3.3035 3.6806 0.0009 7 6 3.9830 5.0257 0.0015 8 6 4.2140 5.4810 -1.4408 9 1 3.2671 5.4727 -1.9805 10 6 4.7893 6.8987 -1.4422 11 7 5.1596 4.5681 -2.0970 12 6 4.0617 2.5257 0.0015 13 6 3.4375 1.2864 0.0010 14 8 4.1807 0.1497 0.0021 15 6 5.5163 0.2917 -0.1135 16 1 5.9560 1.2780 -0.1192 17 6 6.3253 -0.8287 -0.2251 18 7 7.6288 -0.6901 -0.3384 19 14 5.5647 -2.5347 -0.2159 20 1 5.2378 -2.9385 -1.6070 21 1 6.5279 -3.5029 0.3672 22 1 4.3236 -2.5189 0.5995 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.2147 2.3195 -0.0016 27 1 1.3338 4.5110 -0.0102 28 1 3.3521 5.7513 0.5149 29 1 4.9408 4.9487 0.5160 30 1 4.9534 7.2232 -2.4697 31 1 4.0876 7.5760 -0.9553 32 1 5.7363 6.9070 -0.9024 33 1 5.3291 4.8479 -3.0514 34 1 6.0235 4.5089 -1.5790 35 1 5.1399 2.5874 0.0026 36 1 8.1949 -1.4739 -0.4160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037728109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:57 Heat of formation + Delta-G solvation = -44.403227 kcal Electronic energy + Delta-G solvation = -18557.053652 eV Core-core repulsion = 15621.273601 eV Total energy + Delta-G solvation = -2935.780051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65752 -37.62661 -37.18790 -35.30982 -32.25112 -30.59321 -29.32500 -28.66507 -27.15757 -25.59718 -24.85454 -21.40819 -21.23330 -20.03881 -17.87455 -17.59180 -16.34335 -15.78893 -15.33449 -15.17763 -14.50584 -14.16433 -13.85091 -13.74015 -13.45476 -13.25628 -13.02791 -12.76938 -12.19561 -12.12619 -12.04310 -11.58246 -11.38111 -11.21421 -10.83958 -10.75726 -10.72324 -10.35274 -10.13127 -10.06748 -9.31465 -8.73482 -8.34683 -7.73563 -6.93528 -6.28038 -3.90869 2.20006 2.32850 3.33193 3.37891 3.56825 3.99143 4.38977 4.50616 4.76082 4.90627 5.06999 5.16860 5.23949 5.37482 5.42934 5.50709 5.52074 5.64169 5.75454 5.79223 5.88325 5.92412 6.00159 6.07976 6.29189 6.33896 6.45717 6.72538 7.04078 7.09334 7.41624 7.51320 7.64633 7.74357 7.80554 8.08131 8.25505 9.08750 9.74088 10.79748 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.008268 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.170063 B = 3385.741330 C = 4881.228793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.050 3.950 4 C -0.169 4.169 5 C -0.170 4.170 6 C -0.059 4.059 7 C -0.068 4.068 8 C 0.094 3.906 9 H 0.078 0.922 10 C -0.188 4.188 11 N -0.833 5.833 12 C -0.164 4.164 13 C 0.137 3.863 14 O -0.210 6.210 15 C -0.380 4.380 16 H 0.107 0.893 17 C 0.062 3.938 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.257 1.257 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.335 0.665 34 H 0.341 0.659 35 H 0.138 0.862 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 10.377 -0.782 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C 0.005 3.995 4 C -0.188 4.188 5 C -0.189 4.189 6 C -0.059 4.059 7 C -0.105 4.105 8 C -0.018 4.018 9 H 0.096 0.904 10 C -0.247 4.247 11 N -0.362 5.362 12 C -0.183 4.183 13 C 0.085 3.915 14 O -0.116 6.116 15 C -0.456 4.456 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.181 1.181 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.777 9.256 -0.650 13.479 hybrid contribution 0.249 0.386 -0.202 0.502 sum -9.528 9.642 -0.852 13.582 Atomic orbital electron populations 1.22868 0.80399 1.02744 1.00365 1.86165 1.19461 1.26899 1.89949 1.18221 0.89469 0.84405 1.07361 1.20639 0.98370 0.91801 1.08013 1.20246 0.93684 0.95934 1.08995 1.19206 0.92759 0.93880 1.00057 1.20560 1.00301 0.94315 0.95372 1.21414 0.96631 0.88529 0.95256 0.90378 1.22702 1.01534 0.99030 1.01457 1.58773 1.17414 1.54153 1.05897 1.20815 1.00704 0.89895 1.06908 1.18386 0.87617 0.87291 0.98157 1.83658 1.19960 1.27055 1.80893 1.20776 0.77432 0.96811 1.50605 0.87615 1.24403 0.94509 0.99199 0.95874 1.69655 1.02854 1.31329 1.48455 0.86222 0.79632 0.82166 0.79237 1.20040 1.21088 1.18077 0.89259 0.93560 0.93536 0.86559 0.87615 0.91374 0.91471 0.92963 0.92373 0.92724 0.85249 0.84608 0.84453 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.31 -6.59 10.28 -34.02 -0.35 -6.94 16 3 C 0.05 1.10 6.70 -39.05 -0.26 0.83 16 4 C -0.17 -3.07 9.04 -39.46 -0.36 -3.43 16 5 C -0.17 -2.92 9.69 -39.55 -0.38 -3.31 16 6 C -0.06 -1.07 4.95 -104.62 -0.52 -1.59 16 7 C -0.07 -0.97 4.96 -27.89 -0.14 -1.11 16 8 C 0.09 1.21 3.35 -67.71 -0.23 0.98 16 9 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 10 C -0.19 -1.92 9.48 37.16 0.35 -1.56 16 11 N -0.83 -11.98 8.63 -4.67 -0.04 -12.02 16 12 C -0.16 -3.61 8.42 -39.42 -0.33 -3.94 16 13 C 0.14 3.38 6.66 -38.98 -0.26 3.12 16 14 O -0.21 -5.91 8.37 -14.48 -0.12 -6.03 16 15 C -0.38 -11.08 9.95 30.88 0.31 -10.77 16 16 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 17 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 18 N -0.88 -26.10 13.96 55.48 0.77 -25.32 16 19 Si 0.90 22.87 28.62 -169.99 -4.86 18.00 16 20 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 25 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 26 H 0.12 1.74 6.30 -52.49 -0.33 1.41 16 27 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.34 4.15 9.04 -39.29 -0.36 3.80 16 34 H 0.34 4.84 8.98 -39.29 -0.35 4.49 16 35 H 0.14 3.18 5.64 -52.49 -0.30 2.88 16 36 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -31.99 303.66 -5.87 -37.87 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.93 Total: 7.47 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.92 Total: -17.60 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.73 Total: -37.34 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.47 Total: -12.97 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.86 Total: 18.00 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.99 -5.87 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037728109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.536 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds