Wall clock time and date at job start Mon Mar 30 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 116.99715 * 2 1 4 4 C 1.38565 * 120.07636 * 359.97438 * 3 2 1 5 5 C 1.38242 * 119.99815 * 180.02562 * 4 3 2 6 6 C 1.38246 * 120.14884 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92759 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47226 * 200.00496 * 7 6 5 9 9 C 1.52996 * 109.47287 * 79.99699 * 7 6 5 10 10 N 1.46508 * 109.46863 * 319.99759 * 7 6 5 11 11 C 1.36931 * 119.99528 * 205.00058 * 10 7 6 12 12 H 1.08000 * 120.00711 * 0.02562 * 11 10 7 13 13 C 1.38818 * 119.99760 * 180.02562 * 11 10 7 14 14 N 1.31613 * 120.00152 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99685 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46970 * 89.99949 * 15 13 11 17 17 H 1.48498 * 109.46742 * 209.99957 * 15 13 11 18 18 H 1.48500 * 109.46913 * 329.99881 * 15 13 11 19 19 C 1.38248 * 120.14817 * 359.76851 * 6 5 4 20 20 C 1.38565 * 119.99552 * 0.50974 * 19 6 5 21 21 O 1.35995 * 120.07439 * 179.74455 * 20 19 6 22 22 C 1.42903 * 116.99587 * 359.72507 * 21 20 19 23 23 H 1.09005 * 109.47196 * 299.99473 * 1 2 3 24 24 H 1.09004 * 109.47493 * 59.99556 * 1 2 3 25 25 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99773 * 0.04409 * 4 3 2 27 27 H 1.08004 * 119.92435 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47267 * 179.97438 * 9 7 6 29 29 H 1.08998 * 109.47584 * 300.00058 * 9 7 6 30 30 H 1.09003 * 109.46884 * 60.00698 * 9 7 6 31 31 H 0.96993 * 119.99803 * 25.00638 * 10 7 6 32 32 H 0.97005 * 119.99802 * 180.02562 * 14 13 11 33 33 H 1.07994 * 120.00446 * 180.25735 * 19 6 5 34 34 H 1.09002 * 109.47382 * 60.00075 * 22 21 20 35 35 H 1.09001 * 109.46938 * 300.00061 * 22 21 20 36 36 H 1.09004 * 109.46926 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3028 3.6799 -0.0005 7 6 3.9836 5.0244 -0.0005 8 1 5.0094 4.9122 -0.3517 9 6 3.9899 5.5928 1.4199 10 7 3.2605 5.9378 -0.8889 11 6 3.9127 6.9991 -1.4574 12 1 4.9602 7.1627 -1.2513 13 6 3.2275 7.8649 -2.2988 14 7 3.8542 8.8854 -2.8449 15 14 1.4155 7.5825 -2.6548 16 1 0.5951 8.3059 -1.6504 17 1 1.0935 8.0875 -4.0136 18 1 1.1178 6.1294 -2.5833 19 6 4.0603 2.5234 0.0054 20 6 3.4359 1.2863 0.0001 21 8 4.1795 0.1477 0.0006 22 6 5.6003 0.3007 0.0007 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2146 2.3196 -0.0002 27 1 1.3341 4.5115 -0.0011 28 1 4.4827 6.5651 1.4199 29 1 2.9641 5.7050 1.7710 30 1 4.5279 4.9133 2.0808 31 1 2.3199 5.7907 -1.0743 32 1 3.3752 9.4906 -3.4325 33 1 5.1385 2.5840 0.0100 34 1 5.9065 0.8509 0.8905 35 1 5.9065 0.8501 -0.8895 36 1 6.0716 -0.6822 0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040491163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:32 Heat of formation + Delta-G solvation = -32.343362 kcal Electronic energy + Delta-G solvation = -18446.157010 eV Core-core repulsion = 15510.899914 eV Total energy + Delta-G solvation = -2935.257096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45503 -38.36219 -37.57484 -34.88751 -32.10859 -30.29692 -29.92552 -28.54258 -27.23936 -26.88232 -23.86398 -22.59150 -21.78997 -20.01172 -18.50870 -17.69271 -16.77313 -16.49112 -16.00381 -15.21143 -14.67393 -14.64581 -14.56387 -14.36267 -13.55901 -13.13126 -12.84673 -12.50081 -12.42552 -12.22364 -12.07422 -11.81627 -11.45583 -11.15959 -11.11309 -10.93762 -10.75357 -10.58622 -10.35427 -10.03904 -9.59681 -8.98748 -8.51589 -7.58850 -7.29814 -5.78362 -3.13722 1.46257 1.64104 3.32544 3.34566 3.36436 3.39145 3.44206 3.90623 4.58009 4.86547 4.95105 5.05735 5.11229 5.18692 5.20579 5.25968 5.33998 5.41052 5.49924 5.53138 5.58918 5.63458 5.83177 5.97113 6.20729 6.29414 6.38418 6.50957 6.58977 6.82030 6.89378 7.04536 7.12413 7.67666 7.97482 8.40578 9.18583 9.91103 10.10978 11.39899 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.006199 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.771596 B = 4515.810881 C = 5199.561911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.083 3.917 4 C -0.169 4.169 5 C -0.108 4.108 6 C -0.063 4.063 7 C 0.215 3.785 8 H 0.063 0.937 9 C -0.159 4.159 10 N -0.745 5.745 11 C -0.243 4.243 12 H 0.092 0.908 13 C 0.006 3.994 14 N -0.933 5.933 15 Si 0.879 3.121 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.276 1.276 19 C -0.166 4.166 20 C 0.097 3.903 21 O -0.311 6.311 22 C 0.026 3.974 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.362 0.638 32 H 0.260 0.740 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -17.449 7.820 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.038 3.962 4 C -0.188 4.188 5 C -0.127 4.127 6 C -0.064 4.064 7 C 0.106 3.894 8 H 0.081 0.919 9 C -0.219 4.219 10 N -0.389 5.389 11 C -0.372 4.372 12 H 0.109 0.891 13 C -0.190 4.190 14 N -0.581 5.581 15 Si 0.709 3.291 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.186 4.186 20 C 0.052 3.948 21 O -0.225 6.225 22 C -0.069 4.069 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.149 0.851 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.006 -17.654 7.727 19.504 hybrid contribution -1.390 0.305 -0.399 1.478 sum -4.396 -17.349 7.328 19.339 Atomic orbital electron populations 1.23004 0.79089 1.03484 1.01180 1.86125 1.20592 1.26227 1.89568 1.18148 0.89062 0.84939 1.04020 1.21013 0.99639 0.91517 1.06649 1.20723 0.94405 0.96866 1.00716 1.20158 0.93531 0.95619 0.97125 1.19131 0.95026 0.84624 0.90664 0.91881 1.22384 1.01158 1.01093 0.97290 1.42872 1.09502 1.30738 1.55809 1.19072 0.96049 1.00759 1.21365 0.89056 1.24641 0.97469 0.97363 0.99489 1.69693 1.35619 1.16985 1.35787 0.86620 0.87032 0.77662 0.77762 1.20992 1.21649 1.20192 1.20938 1.00306 0.90371 1.06941 1.18166 0.88081 0.85902 1.02632 1.86124 1.18503 1.28488 1.89370 1.23041 0.78900 1.03457 1.01495 0.92909 0.92857 0.88585 0.85112 0.85652 0.91911 0.93364 0.94025 0.80425 0.93040 0.84729 0.92721 0.92579 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.52 10.28 -34.23 -0.35 -4.87 16 3 C 0.08 1.31 6.70 -39.12 -0.26 1.04 16 4 C -0.17 -2.52 9.04 -39.46 -0.36 -2.88 16 5 C -0.11 -1.82 9.05 -39.58 -0.36 -2.17 16 6 C -0.06 -1.10 4.96 -104.62 -0.52 -1.62 16 7 C 0.21 4.17 3.09 -69.08 -0.21 3.96 16 8 H 0.06 1.24 7.94 -51.93 -0.41 0.83 16 9 C -0.16 -2.79 9.47 37.16 0.35 -2.44 16 10 N -0.75 -17.62 4.87 -54.55 -0.27 -17.88 16 11 C -0.24 -6.79 10.41 -15.06 -0.16 -6.94 16 12 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 13 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 14 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 15 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 18 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 19 C -0.17 -2.60 8.66 -39.46 -0.34 -2.95 16 20 C 0.10 1.55 6.70 -39.12 -0.26 1.28 16 21 O -0.31 -4.59 10.28 -34.23 -0.35 -4.94 16 22 C 0.03 0.27 9.81 101.05 0.99 1.26 16 23 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 24 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 27 H 0.13 2.11 6.91 -52.48 -0.36 1.74 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.36 8.42 3.92 -40.82 -0.16 8.26 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.13 1.82 6.28 -52.49 -0.33 1.49 16 34 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 35 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -32.98 300.14 -5.51 -38.49 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.89 Total: 5.87 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.23 Total: -10.10 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.51 Total: -46.31 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.70 Total: -9.82 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.98 -5.51 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040491163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.145 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds