Wall clock time and date at job start Mon Mar 30 2020 04:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35998 * 117.00128 * 2 1 4 4 C 1.38563 * 120.07188 * 359.97230 * 3 2 1 5 5 C 1.38241 * 119.99911 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.14846 * 0.02765 * 5 4 3 7 7 C 1.50692 * 119.92917 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47285 * 159.99895 * 7 6 5 9 9 C 1.53001 * 109.47220 * 280.00019 * 7 6 5 10 10 N 1.46508 * 109.47308 * 39.99665 * 7 6 5 11 11 C 1.36932 * 120.00031 * 154.99704 * 10 7 6 12 12 H 1.07999 * 120.00312 * 0.02562 * 11 10 7 13 13 C 1.38815 * 119.99682 * 179.97438 * 11 10 7 14 14 N 1.31618 * 120.00010 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00093 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46912 * 89.99867 * 15 13 11 17 17 H 1.48494 * 109.47098 * 209.99624 * 15 13 11 18 18 H 1.48497 * 109.47023 * 329.99999 * 15 13 11 19 19 C 1.38248 * 120.14189 * 359.67621 * 6 5 4 20 20 C 1.38562 * 119.99999 * 0.59363 * 19 6 5 21 21 O 1.35994 * 120.07290 * 179.70033 * 20 19 6 22 22 C 1.42903 * 116.99970 * 359.72924 * 21 20 19 23 23 H 1.08996 * 109.47425 * 300.00405 * 1 2 3 24 24 H 1.09002 * 109.47647 * 60.00392 * 1 2 3 25 25 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99757 * 0.05046 * 4 3 2 27 27 H 1.08003 * 119.92491 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47092 * 59.99758 * 9 7 6 29 29 H 1.08998 * 109.47137 * 180.02562 * 9 7 6 30 30 H 1.09005 * 109.46458 * 299.99544 * 9 7 6 31 31 H 0.97002 * 119.99579 * 335.00012 * 10 7 6 32 32 H 0.96993 * 120.00175 * 180.02562 * 14 13 11 33 33 H 1.07998 * 119.99814 * 180.30381 * 19 6 5 34 34 H 1.09002 * 109.47382 * 300.00030 * 22 21 20 35 35 H 1.09001 * 109.46938 * 180.02562 * 22 21 20 36 36 H 1.09004 * 109.46926 * 60.00137 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0006 5 6 1.9224 3.6057 -0.0011 6 6 3.3029 3.6799 -0.0016 7 6 3.9836 5.0243 -0.0028 8 1 5.0094 4.9125 0.3484 9 6 3.9900 5.5915 -1.4238 10 7 3.2605 5.9386 0.8846 11 6 3.9126 7.0005 1.4522 12 1 4.9599 7.1642 1.2455 13 6 3.2273 7.8671 2.2926 14 7 3.8539 8.8881 2.8379 15 14 1.4157 7.5842 2.6497 16 1 1.2768 6.7126 3.8440 17 1 0.7528 8.8876 2.9084 18 1 0.7774 6.9276 1.4807 19 6 4.0602 2.5233 0.0051 20 6 3.4359 1.2863 0.0000 21 8 4.1795 0.1477 0.0005 22 6 5.6003 0.3006 0.0004 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2146 2.3196 -0.0002 27 1 1.3341 4.5115 -0.0011 28 1 2.9643 5.7033 -1.7750 29 1 4.4828 6.5637 -1.4247 30 1 4.5281 4.9112 -2.0840 31 1 2.3198 5.7917 1.0701 32 1 3.3752 9.4934 3.4254 33 1 5.1385 2.5839 0.0096 34 1 5.9065 0.8500 -0.8899 35 1 6.0715 -0.6822 0.0003 36 1 5.9065 0.8508 0.8902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040491164.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:35 Heat of formation + Delta-G solvation = -32.418613 kcal Electronic energy + Delta-G solvation = -18445.223311 eV Core-core repulsion = 15509.962952 eV Total energy + Delta-G solvation = -2935.260359 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45713 -38.36398 -37.57567 -34.88860 -32.10878 -30.29765 -29.92634 -28.54461 -27.24054 -26.88298 -23.86478 -22.59284 -21.79143 -20.01205 -18.51015 -17.69353 -16.77398 -16.49232 -16.00520 -15.21263 -14.67267 -14.64655 -14.56437 -14.36387 -13.56437 -13.12836 -12.84446 -12.50513 -12.42469 -12.23642 -12.07348 -11.81525 -11.45295 -11.16062 -11.11096 -10.93843 -10.74044 -10.58743 -10.35490 -10.05704 -9.59622 -8.98475 -8.51892 -7.59184 -7.29748 -5.78398 -3.13766 1.46048 1.63762 3.32402 3.34427 3.35589 3.39217 3.44174 3.90379 4.57851 4.86435 4.95072 5.05624 5.11158 5.18684 5.20516 5.26121 5.33094 5.40820 5.49619 5.54088 5.59391 5.63478 5.82962 5.97029 6.20763 6.29127 6.38515 6.50908 6.59014 6.82018 6.89260 7.04553 7.12333 7.67521 7.97442 8.40593 9.18512 9.91050 10.10933 11.39904 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.006199 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.638012 B = 4515.652166 C = 5199.114039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.083 3.917 4 C -0.169 4.169 5 C -0.109 4.109 6 C -0.063 4.063 7 C 0.215 3.785 8 H 0.064 0.936 9 C -0.159 4.159 10 N -0.745 5.745 11 C -0.243 4.243 12 H 0.092 0.908 13 C 0.006 3.994 14 N -0.933 5.933 15 Si 0.881 3.119 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.278 1.278 19 C -0.166 4.166 20 C 0.097 3.903 21 O -0.311 6.311 22 C 0.026 3.974 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.362 0.638 32 H 0.260 0.740 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -17.455 -7.787 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.038 3.962 4 C -0.188 4.188 5 C -0.128 4.128 6 C -0.064 4.064 7 C 0.106 3.894 8 H 0.082 0.918 9 C -0.219 4.219 10 N -0.389 5.389 11 C -0.372 4.372 12 H 0.109 0.891 13 C -0.190 4.190 14 N -0.581 5.581 15 Si 0.711 3.289 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.185 4.185 20 C 0.052 3.948 21 O -0.225 6.225 22 C -0.069 4.069 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.998 -17.657 -7.696 19.493 hybrid contribution -1.396 0.310 0.376 1.479 sum -4.394 -17.347 -7.320 19.334 Atomic orbital electron populations 1.23002 0.79088 1.03485 1.01181 1.86125 1.20592 1.26230 1.89564 1.18148 0.89062 0.84940 1.04001 1.21015 0.99643 0.91513 1.06656 1.20746 0.94419 0.96899 1.00743 1.20159 0.93529 0.95610 0.97142 1.19130 0.95033 0.84633 0.90646 0.91844 1.22386 1.01145 1.01082 0.97324 1.42874 1.09382 1.30726 1.55943 1.19070 0.95966 1.01015 1.21183 0.89053 1.24641 0.97457 0.97343 0.99537 1.69691 1.35646 1.16985 1.35770 0.86601 0.86889 0.77143 0.78217 1.21010 1.21664 1.20376 1.20941 1.00316 0.90367 1.06899 1.18165 0.88082 0.85904 1.02632 1.86123 1.18504 1.28489 1.89367 1.23041 0.78896 1.03460 1.01497 0.92852 0.92913 0.88586 0.85107 0.85586 0.93381 0.91927 0.94034 0.80427 0.93036 0.84722 0.92728 0.88550 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.51 10.28 -34.24 -0.35 -4.86 16 3 C 0.08 1.30 6.70 -39.12 -0.26 1.04 16 4 C -0.17 -2.51 9.04 -39.46 -0.36 -2.87 16 5 C -0.11 -1.83 9.05 -39.57 -0.36 -2.19 16 6 C -0.06 -1.10 4.96 -104.62 -0.52 -1.62 16 7 C 0.21 4.17 3.09 -69.08 -0.21 3.96 16 8 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 9 C -0.16 -2.80 9.47 37.16 0.35 -2.45 16 10 N -0.75 -17.62 4.87 -54.55 -0.27 -17.89 16 11 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 12 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 13 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 14 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 15 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 16 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 19 C -0.17 -2.59 8.66 -39.46 -0.34 -2.93 16 20 C 0.10 1.54 6.70 -39.12 -0.26 1.28 16 21 O -0.31 -4.58 10.28 -34.22 -0.35 -4.93 16 22 C 0.03 0.27 9.81 101.05 0.99 1.26 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.13 1.57 6.30 -52.49 -0.33 1.24 16 27 H 0.13 2.13 6.91 -52.48 -0.36 1.77 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.36 8.42 3.92 -40.82 -0.16 8.27 16 32 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 33 H 0.14 1.82 6.27 -52.49 -0.33 1.49 16 34 H 0.05 0.50 7.68 -51.93 -0.40 0.10 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -32.91 300.13 -5.51 -38.42 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.89 Total: 5.87 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.23 Total: -10.11 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.51 Total: -46.31 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.70 Total: -9.79 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.91 -5.51 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040491164.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.000 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds