Wall clock time and date at job start Mon Mar 30 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47187 * 2 1 4 4 C 1.46898 * 111.00126 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47196 * 180.02562 * 4 3 2 6 6 C 1.38150 * 119.98445 * 259.72819 * 5 4 3 7 7 C 1.38194 * 120.12666 * 179.76570 * 6 5 4 8 8 C 1.38826 * 120.07496 * 0.51327 * 7 6 5 9 9 O 1.35910 * 120.01810 * 179.72415 * 8 7 6 10 10 C 1.42895 * 116.99654 * 0.02562 * 9 8 7 11 11 C 1.38563 * 119.96354 * 359.74155 * 8 7 6 12 12 C 1.38804 * 119.87566 * 0.02562 * 11 8 7 13 13 O 1.35753 * 120.04212 * 179.97438 * 12 11 8 14 14 C 1.34833 * 116.99884 * 354.40151 * 13 12 11 15 15 H 1.08001 * 119.99951 * 5.04968 * 14 13 12 16 16 C 1.38652 * 120.00122 * 185.06253 * 14 13 12 17 17 N 1.31562 * 119.99777 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00212 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46723 * 60.00451 * 18 16 14 20 20 H 1.48503 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47404 * 300.00189 * 18 16 14 22 22 H 1.09000 * 109.47343 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46678 * 299.99257 * 1 2 3 24 24 H 1.09001 * 109.47526 * 59.98973 * 1 2 3 25 25 H 1.09008 * 109.46678 * 240.00743 * 2 1 3 26 26 H 1.08991 * 109.47520 * 120.01036 * 2 1 3 27 27 H 1.00907 * 110.99238 * 56.05157 * 3 2 1 28 28 H 1.08994 * 109.47630 * 300.01055 * 4 3 2 29 29 H 1.09006 * 109.46633 * 60.00738 * 4 3 2 30 30 H 1.08001 * 119.93790 * 0.02597 * 6 5 4 31 31 H 1.07996 * 119.96200 * 180.23677 * 7 6 5 32 32 H 1.08999 * 109.47484 * 300.00215 * 10 9 8 33 33 H 1.09002 * 109.47539 * 60.00673 * 10 9 8 34 34 H 1.09004 * 109.47043 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.06511 * 180.02562 * 11 8 7 36 36 H 0.97005 * 119.99958 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 6 3.9524 2.8579 0.0012 6 6 4.3686 3.4494 -1.1758 7 6 4.7903 4.7654 -1.1795 8 6 4.8070 5.4939 0.0021 9 8 5.2273 6.7864 -0.0019 10 6 5.6371 7.3313 -1.2576 11 6 4.3953 4.9025 1.1856 12 6 3.9675 3.5820 1.1864 13 8 3.5639 2.9991 2.3441 14 6 3.7119 3.7177 3.4753 15 1 4.0588 4.7392 3.4246 16 6 3.4189 3.1452 4.7037 17 7 2.9960 1.9009 4.7654 18 14 3.6246 4.1405 6.2710 19 1 2.7482 5.3382 6.2152 20 1 3.2478 3.3062 7.4403 21 1 5.0403 4.5687 6.4033 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 1.6442 1.9012 0.7815 28 1 3.8648 0.9203 0.8907 29 1 3.8654 0.9202 -0.8893 30 1 4.3603 2.8835 -2.0957 31 1 5.1114 5.2262 -2.1019 32 1 6.4717 6.7507 -1.6507 33 1 4.8045 7.2921 -1.9600 34 1 5.9483 8.3669 -1.1201 35 1 4.4072 5.4678 2.1057 36 1 2.7907 1.5005 5.6247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040903822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:11 Heat of formation + Delta-G solvation = -45.740558 kcal Electronic energy + Delta-G solvation = -18402.017507 eV Core-core repulsion = 15466.179466 eV Total energy + Delta-G solvation = -2935.838042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66141 -38.16531 -36.29788 -35.20611 -32.28372 -31.28222 -29.51802 -28.19477 -26.88165 -25.40707 -23.82565 -21.73379 -21.49713 -20.33541 -18.21940 -17.58724 -15.80219 -15.53952 -15.31493 -15.16705 -14.61145 -14.51974 -14.30454 -13.74938 -13.47074 -13.25038 -12.88208 -12.46636 -12.07903 -11.79994 -11.75815 -11.63695 -11.55062 -11.04599 -11.03411 -10.77014 -10.63014 -10.52059 -10.31911 -10.16823 -9.43694 -8.84281 -7.87241 -7.63590 -7.16097 -6.48123 -4.06796 2.19816 2.33945 3.13830 3.14798 3.17012 3.75573 3.96489 4.45071 4.94861 5.10625 5.23145 5.28710 5.38780 5.46265 5.55530 5.62326 5.65372 5.77900 5.82809 5.89716 6.00332 6.17877 6.27873 6.36444 6.40743 6.46700 6.54798 6.68556 7.00781 7.06098 7.26622 7.41858 7.57227 7.63524 7.94766 8.04707 8.06469 8.98437 9.64562 10.69186 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.009681 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.595588 B = 2891.614654 C = 5107.887209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.686 5.686 4 C 0.122 3.878 5 C -0.184 4.184 6 C -0.026 4.026 7 C -0.294 4.294 8 C 0.164 3.836 9 O -0.324 6.324 10 C 0.033 3.967 11 C -0.265 4.265 12 C 0.189 3.811 13 O -0.169 6.169 14 C -0.392 4.392 15 H 0.093 0.907 16 C 0.042 3.958 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.270 1.270 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.350 0.650 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 2.301 -9.037 9.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.318 5.318 4 C -0.007 4.007 5 C -0.186 4.186 6 C -0.045 4.045 7 C -0.314 4.314 8 C 0.119 3.881 9 O -0.238 6.238 10 C -0.063 4.063 11 C -0.285 4.285 12 C 0.134 3.866 13 O -0.072 6.072 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.162 4.162 17 N -0.497 5.497 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.195 1.195 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.169 0.831 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.861 2.088 -9.305 9.575 hybrid contribution 0.406 0.359 1.417 1.517 sum 1.267 2.446 -7.888 8.356 Atomic orbital electron populations 1.21740 0.95573 1.00958 1.02251 1.21855 0.95251 0.90651 0.99885 1.60737 1.08035 1.12440 1.50624 1.20424 0.87521 0.92824 0.99900 1.18768 1.11827 0.96570 0.91431 1.20289 0.94824 0.93405 0.95947 1.20642 1.17289 0.96893 0.96553 1.18709 0.93175 0.82225 0.93954 1.86026 1.79704 1.25432 1.32614 1.22900 0.99233 0.98643 0.85493 1.20294 1.14583 0.96273 0.97335 1.18838 0.90264 0.89951 0.87532 1.83963 1.69816 1.41580 1.11824 1.21316 1.46860 0.96886 0.81757 0.88970 1.25251 0.96344 0.96208 0.98424 1.70018 1.41161 1.12169 1.26352 0.85797 0.79197 0.78971 0.79620 1.19440 1.20319 1.19478 0.92817 0.92671 0.92301 0.91930 0.95290 0.83102 0.94128 0.91891 0.86710 0.87002 0.93113 0.93072 0.89158 0.84803 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.17 37.16 0.38 -1.71 16 2 C 0.05 0.86 6.40 -3.82 -0.02 0.84 16 3 N -0.69 -13.03 6.49 -115.06 -0.75 -13.78 16 4 C 0.12 2.39 5.48 -4.98 -0.03 2.36 16 5 C -0.18 -3.88 5.41 -104.41 -0.56 -4.45 16 6 C -0.03 -0.47 9.66 -39.63 -0.38 -0.86 16 7 C -0.29 -5.33 9.04 -39.38 -0.36 -5.69 16 8 C 0.16 3.32 6.68 -39.24 -0.26 3.06 16 9 O -0.32 -5.88 10.49 -19.46 -0.20 -6.09 16 10 C 0.03 0.41 9.81 101.05 0.99 1.40 16 11 C -0.26 -6.09 9.10 -39.25 -0.36 -6.45 16 12 C 0.19 4.55 6.62 -39.13 -0.26 4.29 16 13 O -0.17 -4.62 8.94 0.03 0.00 -4.62 16 14 C -0.39 -10.80 9.49 30.89 0.29 -10.51 16 15 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 16 C 0.04 1.14 5.49 -17.51 -0.10 1.04 16 17 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 18 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.35 7.47 8.67 -39.29 -0.34 7.13 16 28 H 0.04 0.89 7.85 -51.93 -0.41 0.48 16 29 H 0.06 1.08 8.00 -51.93 -0.42 0.66 16 30 H 0.11 1.79 8.03 -52.49 -0.42 1.37 16 31 H 0.11 1.68 6.29 -52.49 -0.33 1.35 16 32 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 33 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.13 3.15 5.64 -52.49 -0.30 2.86 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -29.63 305.98 -6.22 -35.86 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.95 Total: 9.01 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.67 Total: -16.67 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.01 Total: -37.60 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.20 Total: -10.71 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.63 -6.22 -35.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040903822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.884 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds