Wall clock time and date at job start Mon Mar 30 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47193 * 2 1 4 4 C 1.50706 * 109.47253 * 240.00639 * 2 1 3 5 5 H 1.07993 * 119.99679 * 239.99977 * 4 2 1 6 6 C 1.37879 * 119.99969 * 59.99112 * 4 2 1 7 7 N 1.31510 * 120.00069 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99924 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47377 * 60.00406 * 8 6 4 10 10 H 1.48498 * 109.46853 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47287 * 300.00230 * 8 6 4 12 12 N 1.46495 * 109.47586 * 120.00228 * 2 1 3 13 13 C 1.34024 * 122.79645 * 59.97657 * 12 2 1 14 14 O 1.21230 * 125.42622 * 359.75352 * 13 12 2 15 15 C 1.51554 * 109.15305 * 180.02562 * 13 12 2 16 16 C 1.53392 * 103.19835 * 0.02562 * 15 13 12 17 17 C 1.53406 * 110.91029 * 120.01782 * 16 15 13 18 18 C 1.55094 * 103.96950 * 98.66101 * 17 16 15 19 19 C 1.54965 * 102.86584 * 37.18215 * 18 17 16 20 20 C 1.53007 * 111.13348 * 239.57249 * 16 15 13 21 21 C 1.34188 * 122.80450 * 239.99910 * 12 2 1 22 22 O 1.21235 * 125.58012 * 0.02562 * 21 12 2 23 23 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47145 * 299.99451 * 1 2 3 25 25 H 1.08997 * 109.47901 * 59.99686 * 1 2 3 26 26 H 0.97001 * 120.00078 * 179.97438 * 7 6 4 27 27 H 1.09000 * 110.67271 * 118.42670 * 15 13 12 28 28 H 1.08998 * 110.67217 * 241.57470 * 15 13 12 29 29 H 1.09006 * 110.52734 * 217.28081 * 17 16 15 30 30 H 1.08995 * 110.53268 * 340.03641 * 17 16 15 31 31 H 1.09005 * 110.73452 * 278.84243 * 18 17 16 32 32 H 1.08997 * 110.89187 * 155.60273 * 18 17 16 33 33 H 1.08999 * 110.48350 * 203.85588 * 19 18 17 34 34 H 1.09001 * 110.47961 * 81.22296 * 19 18 17 35 35 H 1.08999 * 110.10537 * 357.38315 * 20 16 15 36 36 H 1.08996 * 110.09716 * 118.93733 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.8258 -2.5199 -4.0080 10 1 1.8266 -0.4195 -5.2205 11 1 3.8062 -1.1205 -4.0084 12 7 2.0183 -0.6906 1.1961 13 6 1.7289 -1.9716 1.4638 14 8 1.0445 -2.6963 0.7739 15 6 2.3881 -2.3678 2.7697 16 6 3.1068 -1.0838 3.2029 17 6 2.5915 -0.6008 4.5647 18 6 3.6504 -1.1207 5.5716 19 6 4.9794 -0.9519 4.7927 20 6 4.6138 -1.3131 3.3356 21 6 2.7924 -0.0934 2.1152 22 8 3.1745 1.0565 2.0762 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3635 0.5138 -0.8899 26 1 0.7091 1.1619 -3.4844 27 1 1.6388 -2.6564 3.5069 28 1 3.1034 -3.1746 2.6103 29 1 2.5418 0.4878 4.5904 30 1 1.6147 -1.0341 4.7794 31 1 3.4736 -2.1695 5.8104 32 1 3.6548 -0.5156 6.4782 33 1 5.7361 -1.6360 5.1768 34 1 5.3291 0.0786 4.8540 35 1 4.8527 -2.3580 3.1375 36 1 5.1533 -0.6679 2.6422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:11 Heat of formation + Delta-G solvation = -78.262631 kcal Electronic energy + Delta-G solvation = -19390.359626 eV Core-core repulsion = 16453.111321 eV Total energy + Delta-G solvation = -2937.248305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.57514 -38.16394 -37.25581 -35.10564 -33.67459 -31.48286 -28.92801 -28.82160 -26.46513 -25.26227 -22.87149 -22.21788 -20.85653 -19.68382 -18.55480 -16.71560 -16.16302 -15.82015 -15.76325 -15.05978 -14.76046 -14.20345 -14.07784 -13.68640 -13.14793 -13.06747 -12.62040 -12.39697 -11.92759 -11.71280 -11.44270 -11.22953 -11.20574 -11.04364 -10.92324 -10.91226 -10.78136 -10.56773 -10.45164 -10.20789 -9.64238 -9.39570 -9.07117 -8.48430 -8.40406 -6.10727 -4.17340 2.18577 3.30693 3.33958 3.34960 3.44730 3.50023 4.29663 4.37670 4.43254 4.53877 4.75148 5.04067 5.06812 5.21932 5.23191 5.39408 5.55164 5.57901 5.70402 5.76082 5.80694 5.85472 5.98099 6.10110 6.17627 6.25676 6.49457 6.68881 6.89464 6.92972 7.33683 7.61919 7.87507 7.95975 8.11262 8.24327 8.61202 8.84329 9.47668 10.95738 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.006647 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.072798 B = 4211.557921 C = 4217.767372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.252 3.748 3 H 0.063 0.937 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.554 5.554 13 C 0.523 3.477 14 O -0.472 6.472 15 C -0.152 4.152 16 C -0.105 4.105 17 C -0.104 4.104 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.103 4.103 21 C 0.534 3.466 22 O -0.491 6.491 23 H 0.047 0.953 24 H 0.010 0.990 25 H 0.099 0.901 26 H 0.265 0.735 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -4.846 14.835 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.153 3.847 3 H 0.081 0.919 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.731 3.269 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.294 5.294 13 C 0.310 3.690 14 O -0.343 6.343 15 C -0.192 4.192 16 C -0.109 4.109 17 C -0.141 4.141 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.140 4.140 21 C 0.322 3.678 22 O -0.364 6.364 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.523 -4.470 14.220 15.577 hybrid contribution 0.251 -0.406 -1.000 1.108 sum 4.774 -4.876 13.220 14.877 Atomic orbital electron populations 1.22115 0.97002 1.01042 1.00926 1.19251 0.92180 0.93755 0.79481 0.91936 1.21090 1.32142 1.12692 0.89846 0.92269 1.24841 0.94821 0.94945 0.99006 1.69853 1.36258 1.22617 1.24082 0.86460 0.79100 0.79824 0.81528 1.19993 1.21038 1.20197 1.47301 1.44810 1.13429 1.23894 1.20582 0.79967 0.81711 0.86726 1.90711 1.35617 1.54801 1.53194 1.22753 1.01526 0.98012 0.96924 1.21541 0.98351 0.94701 0.96293 1.22302 0.98812 1.01953 0.91063 1.22528 0.94492 1.01150 0.97640 1.22413 0.97348 1.01872 0.94293 1.22061 0.91664 1.02324 0.97997 1.20284 0.76993 0.87622 0.82950 1.90681 1.51941 1.16969 1.76837 0.93408 0.97118 0.88306 0.92492 0.87099 0.87024 0.90285 0.90675 0.91206 0.91259 0.91384 0.91202 0.90529 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.95 37.15 0.33 -3.55 16 2 C 0.25 6.64 2.70 -69.09 -0.19 6.45 16 3 H 0.06 1.81 7.43 -51.93 -0.39 1.42 16 4 C -0.52 -14.77 7.97 -34.44 -0.27 -15.04 16 5 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.55 -12.29 2.48 -109.62 -0.27 -12.57 16 13 C 0.52 10.54 7.33 -10.90 -0.08 10.46 16 14 O -0.47 -11.12 15.74 5.60 0.09 -11.03 16 15 C -0.15 -2.08 6.32 -27.26 -0.17 -2.25 16 16 C -0.11 -1.48 0.90 -155.37 -0.14 -1.62 16 17 C -0.10 -1.19 5.93 -25.41 -0.15 -1.34 16 18 C -0.12 -1.07 6.92 -24.59 -0.17 -1.24 16 19 C -0.12 -1.17 6.85 -24.90 -0.17 -1.34 16 20 C -0.10 -1.24 6.17 -25.93 -0.16 -1.40 16 21 C 0.53 10.56 6.47 -11.38 -0.07 10.49 16 22 O -0.49 -11.10 17.18 5.60 0.10 -11.00 16 23 H 0.05 1.23 6.64 -51.93 -0.34 0.88 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.11 1.22 7.30 -51.93 -0.38 0.84 16 28 H 0.11 1.29 7.18 -51.93 -0.37 0.92 16 29 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 30 H 0.07 0.76 7.37 -51.93 -0.38 0.38 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.78 7.16 -51.93 -0.37 0.41 16 36 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -32.15 290.78 -6.45 -38.60 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.01 Total: -1.72 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.34 Total: 1.42 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.36 Total: -37.54 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.18 Total: -22.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.15 -6.45 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.666 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds