Wall clock time and date at job start Mon Mar 30 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47193 * 2 1 4 4 C 1.50706 * 109.47253 * 240.00639 * 2 1 3 5 5 H 1.07993 * 119.99679 * 239.99977 * 4 2 1 6 6 C 1.37879 * 119.99969 * 59.99112 * 4 2 1 7 7 N 1.31510 * 120.00069 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99924 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47377 * 60.00406 * 8 6 4 10 10 H 1.48498 * 109.46853 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47287 * 300.00230 * 8 6 4 12 12 N 1.46495 * 109.47586 * 120.00228 * 2 1 3 13 13 C 1.34024 * 122.79645 * 59.97657 * 12 2 1 14 14 O 1.21230 * 125.42622 * 359.75352 * 13 12 2 15 15 C 1.51554 * 109.15305 * 180.02562 * 13 12 2 16 16 C 1.53392 * 103.19835 * 0.02562 * 15 13 12 17 17 C 1.53406 * 110.91029 * 120.01782 * 16 15 13 18 18 C 1.55094 * 103.96950 * 98.66101 * 17 16 15 19 19 C 1.54965 * 102.86584 * 37.18215 * 18 17 16 20 20 C 1.53007 * 111.13348 * 239.57249 * 16 15 13 21 21 C 1.34188 * 122.80450 * 239.99910 * 12 2 1 22 22 O 1.21235 * 125.58012 * 0.02562 * 21 12 2 23 23 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47145 * 299.99451 * 1 2 3 25 25 H 1.08997 * 109.47901 * 59.99686 * 1 2 3 26 26 H 0.97001 * 120.00078 * 179.97438 * 7 6 4 27 27 H 1.09000 * 110.67271 * 118.42670 * 15 13 12 28 28 H 1.08998 * 110.67217 * 241.57470 * 15 13 12 29 29 H 1.09006 * 110.52734 * 217.28081 * 17 16 15 30 30 H 1.08995 * 110.53268 * 340.03641 * 17 16 15 31 31 H 1.09005 * 110.73452 * 278.84243 * 18 17 16 32 32 H 1.08997 * 110.89187 * 155.60273 * 18 17 16 33 33 H 1.08999 * 110.48350 * 203.85588 * 19 18 17 34 34 H 1.09001 * 110.47961 * 81.22296 * 19 18 17 35 35 H 1.08999 * 110.10537 * 357.38315 * 20 16 15 36 36 H 1.08996 * 110.09716 * 118.93733 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.8258 -2.5199 -4.0080 10 1 1.8266 -0.4195 -5.2205 11 1 3.8062 -1.1205 -4.0084 12 7 2.0183 -0.6906 1.1961 13 6 1.7289 -1.9716 1.4638 14 8 1.0445 -2.6963 0.7739 15 6 2.3881 -2.3678 2.7697 16 6 3.1068 -1.0838 3.2029 17 6 2.5915 -0.6008 4.5647 18 6 3.6504 -1.1207 5.5716 19 6 4.9794 -0.9519 4.7927 20 6 4.6138 -1.3131 3.3356 21 6 2.7924 -0.0934 2.1152 22 8 3.1745 1.0565 2.0762 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3635 0.5138 -0.8899 26 1 0.7091 1.1619 -3.4844 27 1 1.6388 -2.6564 3.5069 28 1 3.1034 -3.1746 2.6103 29 1 2.5418 0.4878 4.5904 30 1 1.6147 -1.0341 4.7794 31 1 3.4736 -2.1695 5.8104 32 1 3.6548 -0.5156 6.4782 33 1 5.7361 -1.6360 5.1768 34 1 5.3291 0.0786 4.8540 35 1 4.8527 -2.3580 3.1375 36 1 5.1533 -0.6679 2.6422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:11 Heat of formation + Delta-G solvation = -99.095657 kcal Electronic energy + Delta-G solvation = -19391.263014 eV Core-core repulsion = 16453.111321 eV Total energy + Delta-G solvation = -2938.151692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.05526 -39.67287 -38.57481 -36.91891 -35.50088 -33.14313 -30.52003 -29.77137 -27.66177 -27.45692 -24.38179 -23.94221 -21.64548 -21.15282 -20.02887 -18.66919 -17.96308 -17.22265 -17.12871 -16.71125 -16.12867 -15.72750 -15.36933 -15.15472 -14.77217 -14.46236 -14.30543 -13.85435 -13.45459 -13.30200 -12.99423 -12.90696 -12.81809 -12.53392 -12.30961 -12.14934 -12.04192 -11.94174 -11.76236 -11.59799 -11.31513 -11.02357 -10.80193 -10.56156 -10.36397 -8.27490 -6.42706 0.62386 1.33901 1.37548 1.44924 1.85570 1.95625 2.35154 3.00794 3.12390 3.26722 3.54047 3.57026 3.94515 4.30401 4.37756 4.51331 4.53105 4.59753 4.62555 4.71836 4.74916 4.78905 4.87826 4.89108 4.96609 5.11495 5.20554 5.27580 5.30782 5.33185 5.48635 5.55585 5.73529 5.91095 6.29871 6.54803 6.60639 6.98656 7.27691 8.78437 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.006647 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.072798 B = 4211.557921 C = 4217.767372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.253 3.747 3 H 0.023 0.977 4 C -0.539 4.539 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.967 3.033 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.270 1.270 12 N -0.571 5.571 13 C 0.511 3.489 14 O -0.514 6.514 15 C -0.129 4.129 16 C -0.093 4.093 17 C -0.106 4.106 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.106 4.106 21 C 0.522 3.478 22 O -0.532 6.532 23 H 0.040 0.960 24 H 0.027 0.973 25 H 0.077 0.923 26 H 0.269 0.731 27 H 0.151 0.849 28 H 0.145 0.855 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -7.115 16.919 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.152 3.848 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.067 0.933 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.195 1.195 12 N -0.311 5.311 13 C 0.302 3.698 14 O -0.389 6.389 15 C -0.168 4.168 16 C -0.096 4.096 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.143 4.143 21 C 0.313 3.687 22 O -0.408 6.408 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.467 -6.745 16.345 18.508 hybrid contribution -0.043 0.381 -1.658 1.702 sum 5.425 -6.363 14.687 16.900 Atomic orbital electron populations 1.21884 0.96597 1.00327 1.00647 1.18822 0.92473 0.92193 0.81296 0.95865 1.21279 1.32588 1.12615 0.91223 0.93333 1.25701 0.94907 0.95653 1.01955 1.69964 1.36744 1.23545 1.24932 0.85475 0.78800 0.78596 0.78018 1.19808 1.19762 1.19457 1.47441 1.45665 1.14711 1.23275 1.21744 0.79177 0.80359 0.88505 1.90679 1.37587 1.55409 1.55183 1.22887 1.02377 0.98282 0.93251 1.21663 1.00148 0.92709 0.95111 1.22402 1.00912 1.00957 0.90076 1.22539 0.92244 1.02895 0.96946 1.22428 0.98734 1.01846 0.92600 1.22172 0.89528 1.03380 0.99263 1.21426 0.75523 0.88037 0.83665 1.90642 1.53154 1.19155 1.77849 0.94079 0.95430 0.90479 0.92174 0.83107 0.83710 0.92414 0.88669 0.88477 0.89862 0.88685 0.92540 0.87770 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.21 8.95 71.98 0.64 -6.56 16 2 C 0.25 13.98 2.70 44.24 0.12 14.10 16 3 H 0.02 1.45 7.43 -2.39 -0.02 1.43 16 4 C -0.54 -31.75 7.97 25.60 0.20 -31.54 16 5 H 0.05 2.88 7.65 -2.91 -0.02 2.86 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -54.15 11.32 21.45 0.24 -53.90 16 8 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.57 -25.93 2.48 -738.30 -1.83 -27.76 16 13 C 0.51 20.29 7.33 88.05 0.65 20.94 16 14 O -0.51 -24.30 15.74 -2.88 -0.05 -24.34 16 15 C -0.13 -3.04 6.32 30.25 0.19 -2.85 16 16 C -0.09 -2.40 0.90 -52.74 -0.05 -2.45 16 17 C -0.11 -2.09 5.93 31.45 0.19 -1.91 16 18 C -0.11 -1.40 6.92 31.98 0.22 -1.18 16 19 C -0.12 -1.85 6.85 31.78 0.22 -1.63 16 20 C -0.11 -2.26 6.17 31.11 0.19 -2.07 16 21 C 0.52 21.08 6.47 87.66 0.57 21.64 16 22 O -0.53 -25.31 17.18 -2.89 -0.05 -25.36 16 23 H 0.04 2.18 6.64 -2.39 -0.02 2.16 16 24 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.08 4.39 6.07 -2.39 -0.01 4.38 16 26 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 27 H 0.15 2.47 7.30 -2.39 -0.02 2.45 16 28 H 0.15 2.58 7.18 -2.39 -0.02 2.56 16 29 H 0.06 1.41 7.86 -2.38 -0.02 1.39 16 30 H 0.09 1.51 7.37 -2.39 -0.02 1.50 16 31 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.66 7.16 -2.39 -0.02 1.65 16 36 H 0.04 1.25 7.73 -2.39 -0.02 1.23 16 Total: -1.00 -75.17 290.78 5.01 -70.16 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.08 Total: 5.64 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 3.59 Total: 7.98 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.59 Total: -81.66 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.17 5.01 -70.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.931 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds