Wall clock time and date at job start Mon Mar 30 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47428 * 2 1 4 4 C 1.35891 * 117.00207 * 180.02562 * 3 2 1 5 5 C 1.38793 * 120.02922 * 359.97438 * 4 3 2 6 6 C 1.38155 * 120.05991 * 180.02562 * 5 4 3 7 7 C 1.38205 * 120.10454 * 0.02562 * 6 5 4 8 8 C 1.38746 * 120.05454 * 359.97438 * 7 6 5 9 9 O 1.35903 * 120.02539 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99867 * 359.97438 * 9 8 7 11 11 C 1.52998 * 109.47000 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47141 * 55.00206 * 11 10 9 13 13 N 1.46901 * 109.47134 * 295.00292 * 11 10 9 14 14 C 1.50696 * 109.47224 * 174.99850 * 11 10 9 15 15 H 1.08001 * 120.00159 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00273 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99743 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00067 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47172 * 120.00573 * 18 16 14 21 21 H 1.48503 * 109.47308 * 240.00010 * 18 16 14 22 22 C 1.38619 * 120.03009 * 180.02562 * 4 3 2 23 23 H 1.08996 * 109.47133 * 59.99627 * 1 2 3 24 24 H 1.08996 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46689 * 299.99744 * 1 2 3 26 26 H 1.08999 * 109.46843 * 239.99973 * 2 1 3 27 27 H 1.08996 * 109.47133 * 120.00373 * 2 1 3 28 28 H 1.08005 * 119.97373 * 0.04552 * 5 4 3 29 29 H 1.07995 * 119.94782 * 180.28198 * 6 5 4 30 30 H 1.07997 * 119.96914 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.47477 * 299.99862 * 10 9 8 32 32 H 1.08996 * 109.46990 * 60.00083 * 10 9 8 33 33 H 1.00902 * 110.99841 * 176.05055 * 13 11 10 34 34 H 1.00903 * 110.99825 * 299.99299 * 13 11 10 35 35 H 0.96998 * 120.00245 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.05250 * 359.95035 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1997 0.4250 -0.0005 6 6 5.5694 0.6052 -0.0005 7 6 6.1007 1.8811 0.0000 8 6 5.2592 2.9842 -0.0001 9 8 5.7822 4.2385 0.0010 10 6 7.2071 4.3472 0.0026 11 6 7.6059 5.8243 0.0029 12 1 7.1305 6.3288 0.8442 13 7 7.1698 6.4495 -1.2529 14 6 9.1031 5.9404 0.1285 15 1 9.7097 5.0497 0.2004 16 6 9.6988 7.1837 0.1505 17 7 8.9602 8.2683 0.0624 18 14 11.5547 7.3275 0.3054 19 1 12.1513 5.9702 0.3884 20 1 12.0972 8.0356 -0.8819 21 1 11.8912 8.0914 1.5337 22 6 3.8842 2.8059 0.0000 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.7869 -0.5731 -0.0008 29 1 6.2260 -0.2522 -0.0051 30 1 7.1717 2.0194 0.0004 31 1 7.6075 3.8623 0.8928 32 1 7.6094 3.8629 -0.8871 33 1 7.3641 7.4396 -1.2504 34 1 7.5971 5.9993 -2.0484 35 1 9.3792 9.1430 0.0782 36 1 3.2275 3.6633 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057501582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:55 Heat of formation + Delta-G solvation = -63.221124 kcal Electronic energy + Delta-G solvation = -17711.351395 eV Core-core repulsion = 14774.755339 eV Total energy + Delta-G solvation = -2936.596056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16579 -38.75122 -36.34250 -34.53720 -32.09458 -31.40891 -30.05700 -28.92906 -27.21085 -25.17572 -23.81823 -22.48772 -21.26560 -20.04110 -18.54470 -16.76416 -16.19312 -16.11162 -15.83185 -15.54115 -15.28079 -14.74716 -14.30006 -13.75936 -13.37892 -13.29736 -12.85904 -12.79066 -12.47098 -12.28190 -11.91707 -11.60845 -11.44204 -11.10047 -10.93996 -10.85407 -10.75243 -10.48531 -10.12215 -9.98471 -9.58501 -8.67857 -8.24285 -7.79759 -7.17726 -6.15375 -4.33831 1.59192 1.69552 3.03776 3.17582 3.26321 3.29604 3.99754 4.02624 4.33060 4.73075 4.77120 4.97919 5.02261 5.07718 5.21455 5.27641 5.41916 5.49053 5.57264 5.72636 5.80592 5.98358 6.00581 6.17590 6.35814 6.42417 6.52515 6.66797 6.74987 6.89539 7.48592 7.55357 7.65700 7.97206 8.07662 8.63362 8.92556 9.13542 9.39851 10.82853 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.055389 B = 0.003709 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.392347 B = 7547.315619 C = 7937.448248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.316 6.316 4 C 0.163 3.837 5 C -0.261 4.261 6 C -0.043 4.043 7 C -0.249 4.249 8 C 0.184 3.816 9 O -0.293 6.293 10 C 0.075 3.925 11 C 0.215 3.785 12 H 0.047 0.953 13 N -0.846 5.846 14 C -0.556 4.556 15 H 0.057 0.943 16 C 0.068 3.932 17 N -0.888 5.888 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.197 4.197 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.354 0.646 34 H 0.309 0.691 35 H 0.266 0.734 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.582 -15.710 -0.457 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.230 6.230 4 C 0.118 3.882 5 C -0.280 4.280 6 C -0.061 4.061 7 C -0.268 4.268 8 C 0.136 3.864 9 O -0.205 6.205 10 C 0.001 3.999 11 C 0.105 3.895 12 H 0.065 0.935 13 N -0.375 5.375 14 C -0.596 4.596 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.527 5.527 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.216 4.216 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.170 0.830 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.567 -15.383 -0.226 19.248 hybrid contribution 2.453 -0.047 0.003 2.453 sum -9.114 -15.430 -0.223 17.922 Atomic orbital electron populations 1.21779 0.92932 1.02636 1.03586 1.22739 0.95629 0.82225 1.01353 1.86043 1.19272 1.29013 1.88656 1.18497 0.81866 0.93290 0.94571 1.20969 0.94274 0.97511 1.15218 1.20644 0.94136 0.96462 0.94856 1.21280 1.00376 0.92508 1.12681 1.18829 0.91794 0.85230 0.90564 1.86279 1.25573 1.22624 1.86041 1.23299 0.75434 1.01716 0.99496 1.18938 0.92627 0.86486 0.91490 0.93468 1.59427 1.64363 1.09970 1.03758 1.21756 0.92474 0.92865 1.52466 0.92437 1.24998 0.98809 0.95565 0.94166 1.69768 1.35378 0.97923 1.49605 0.86405 0.84723 0.78231 0.77831 1.19711 1.20838 1.20749 1.19452 0.92802 0.95519 1.13843 0.91498 0.90543 0.91517 0.92112 0.92121 0.86030 0.86001 0.85219 0.92869 0.93225 0.82971 0.88203 0.92355 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.52 5.46 37.16 0.20 0.73 16 3 O -0.32 -4.31 10.13 -19.40 -0.20 -4.51 16 4 C 0.16 2.46 6.68 -39.24 -0.26 2.20 16 5 C -0.26 -3.48 9.04 -39.41 -0.36 -3.83 16 6 C -0.04 -0.59 10.04 -39.62 -0.40 -0.98 16 7 C -0.25 -4.06 9.04 -39.41 -0.36 -4.42 16 8 C 0.18 3.40 6.68 -39.24 -0.26 3.14 16 9 O -0.29 -6.28 10.08 -19.44 -0.20 -6.47 16 10 C 0.08 1.62 4.27 37.16 0.16 1.78 16 11 C 0.22 5.44 2.99 -68.87 -0.21 5.23 16 12 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 13 N -0.85 -20.84 9.14 -5.66 -0.05 -20.89 16 14 C -0.56 -14.76 8.73 -34.44 -0.30 -15.06 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.07 1.81 5.38 -17.82 -0.10 1.72 16 17 N -0.89 -24.54 11.54 55.43 0.64 -23.90 16 18 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 C -0.20 -3.39 9.93 -39.29 -0.39 -3.78 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 27 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.12 1.27 6.29 -52.48 -0.33 0.94 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 31 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 32 H 0.05 1.02 7.66 -51.93 -0.40 0.62 16 33 H 0.35 9.27 7.08 -39.29 -0.28 9.00 16 34 H 0.31 7.23 8.99 -39.29 -0.35 6.87 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 304.28 15.07 4.59 4.59 Total: -1.00 -28.75 304.28 -7.08 -35.83 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -4.96 Total: 13.78 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.88 Total: -13.99 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.59 Total: -44.79 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.39 Total: -10.98 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.75 -7.08 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057501582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.389 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds