Wall clock time and date at job start Mon Mar 30 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47428 * 2 1 4 4 C 1.35891 * 117.00207 * 180.02562 * 3 2 1 5 5 C 1.38793 * 120.02922 * 359.97438 * 4 3 2 6 6 C 1.38155 * 120.05991 * 180.02562 * 5 4 3 7 7 C 1.38205 * 120.10454 * 0.02562 * 6 5 4 8 8 C 1.38746 * 120.05454 * 359.97438 * 7 6 5 9 9 O 1.35903 * 120.02539 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99867 * 359.97438 * 9 8 7 11 11 C 1.52998 * 109.47000 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47141 * 55.00206 * 11 10 9 13 13 N 1.46901 * 109.47134 * 295.00292 * 11 10 9 14 14 C 1.50696 * 109.47224 * 174.99850 * 11 10 9 15 15 H 1.08001 * 120.00159 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00273 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99743 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00067 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47172 * 120.00573 * 18 16 14 21 21 H 1.48503 * 109.47308 * 240.00010 * 18 16 14 22 22 C 1.38619 * 120.03009 * 180.02562 * 4 3 2 23 23 H 1.08996 * 109.47133 * 59.99627 * 1 2 3 24 24 H 1.08996 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46689 * 299.99744 * 1 2 3 26 26 H 1.08999 * 109.46843 * 239.99973 * 2 1 3 27 27 H 1.08996 * 109.47133 * 120.00373 * 2 1 3 28 28 H 1.08005 * 119.97373 * 0.04552 * 5 4 3 29 29 H 1.07995 * 119.94782 * 180.28198 * 6 5 4 30 30 H 1.07997 * 119.96914 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.47477 * 299.99862 * 10 9 8 32 32 H 1.08996 * 109.46990 * 60.00083 * 10 9 8 33 33 H 1.00902 * 110.99841 * 176.05055 * 13 11 10 34 34 H 1.00903 * 110.99825 * 299.99299 * 13 11 10 35 35 H 0.96998 * 120.00245 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.05250 * 359.95035 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 4.1997 0.4250 -0.0005 6 6 5.5694 0.6052 -0.0005 7 6 6.1007 1.8811 0.0000 8 6 5.2592 2.9842 -0.0001 9 8 5.7822 4.2385 0.0010 10 6 7.2071 4.3472 0.0026 11 6 7.6059 5.8243 0.0029 12 1 7.1305 6.3288 0.8442 13 7 7.1698 6.4495 -1.2529 14 6 9.1031 5.9404 0.1285 15 1 9.7097 5.0497 0.2004 16 6 9.6988 7.1837 0.1505 17 7 8.9602 8.2683 0.0624 18 14 11.5547 7.3275 0.3054 19 1 12.1513 5.9702 0.3884 20 1 12.0972 8.0356 -0.8819 21 1 11.8912 8.0914 1.5337 22 6 3.8842 2.8059 0.0000 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.7869 -0.5731 -0.0008 29 1 6.2260 -0.2522 -0.0051 30 1 7.1717 2.0194 0.0004 31 1 7.6075 3.8623 0.8928 32 1 7.6094 3.8629 -0.8871 33 1 7.3641 7.4396 -1.2504 34 1 7.5971 5.9993 -2.0484 35 1 9.3792 9.1430 0.0782 36 1 3.2275 3.6633 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057501582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:55 Heat of formation + Delta-G solvation = -82.335000 kcal Electronic energy + Delta-G solvation = -17712.180235 eV Core-core repulsion = 14774.755339 eV Total energy + Delta-G solvation = -2937.424896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.35756 -40.05161 -37.67233 -36.40040 -33.38443 -32.89054 -31.28153 -30.09852 -29.06259 -27.05190 -24.71056 -23.77116 -22.51151 -21.71620 -19.81935 -18.56731 -17.46389 -17.30672 -17.07145 -16.85663 -16.79105 -16.48349 -15.81084 -15.25206 -14.67898 -14.52851 -14.36297 -13.96814 -13.71020 -13.36882 -13.04578 -12.94037 -12.90099 -12.73011 -12.69224 -12.35166 -11.89548 -11.85779 -11.76638 -11.46211 -11.41082 -10.72699 -9.47264 -9.20594 -9.04683 -8.17942 -6.44860 0.40547 0.47636 1.38250 1.40359 1.52018 1.96401 2.34099 2.76763 2.79147 3.02228 3.83981 4.07103 4.10259 4.11842 4.18191 4.23584 4.25602 4.35786 4.41878 4.51366 4.58570 4.73664 4.91507 4.97441 5.02204 5.19578 5.30602 5.36178 5.46731 5.51488 5.57575 5.63965 5.96043 6.44139 6.53102 6.65986 6.89745 7.09501 7.33123 8.79675 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.055389 B = 0.003709 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.392347 B = 7547.315619 C = 7937.448248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.333 6.333 4 C 0.163 3.837 5 C -0.247 4.247 6 C -0.034 4.034 7 C -0.259 4.259 8 C 0.152 3.848 9 O -0.322 6.322 10 C 0.092 3.908 11 C 0.213 3.787 12 H 0.007 0.993 13 N -0.842 5.842 14 C -0.572 4.572 15 H 0.062 0.938 16 C 0.020 3.980 17 N -0.917 5.917 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.281 1.281 22 C -0.220 4.220 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.132 0.868 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.344 0.656 34 H 0.317 0.683 35 H 0.269 0.731 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -18.659 -0.617 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.117 3.883 5 C -0.266 4.266 6 C -0.052 4.052 7 C -0.278 4.278 8 C 0.106 3.894 9 O -0.235 6.235 10 C 0.017 3.983 11 C 0.102 3.898 12 H 0.025 0.975 13 N -0.370 5.370 14 C -0.611 4.611 15 H 0.080 0.920 16 C -0.181 4.181 17 N -0.556 5.556 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.206 1.206 22 C -0.239 4.239 23 H 0.079 0.921 24 H 0.123 0.877 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.178 0.822 30 H 0.150 0.850 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.226 -18.366 -0.391 21.529 hybrid contribution 2.161 0.757 0.058 2.291 sum -9.065 -17.609 -0.333 19.808 Atomic orbital electron populations 1.21826 0.91527 1.04300 1.03056 1.23149 0.96844 0.80359 1.02739 1.86047 1.18409 1.32004 1.88285 1.18564 0.82969 0.92895 0.93853 1.21392 0.93943 0.98534 1.12718 1.21078 0.94921 0.96420 0.92808 1.21417 1.00272 0.93018 1.13123 1.19065 0.92564 0.84733 0.93055 1.86190 1.25018 1.24983 1.87318 1.22923 0.76210 0.99027 1.00184 1.18847 0.92187 0.88512 0.90223 0.97539 1.59395 1.64363 1.09297 1.03979 1.22026 0.93127 0.93289 1.52673 0.91953 1.25838 1.03397 0.95193 0.93681 1.69885 1.37235 0.98395 1.50070 0.85329 0.79102 0.78377 0.77706 1.18900 1.20351 1.20629 1.19522 0.92444 0.96568 1.15407 0.92062 0.87725 0.92075 0.90618 0.90621 0.82321 0.82173 0.85025 0.92209 0.92314 0.84128 0.87349 0.92184 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.04 0.68 5.46 71.98 0.39 1.08 16 3 O -0.33 -8.65 10.13 -92.32 -0.94 -9.58 16 4 C 0.16 4.72 6.68 22.49 0.15 4.87 16 5 C -0.25 -5.75 9.04 22.38 0.20 -5.55 16 6 C -0.03 -0.83 10.04 22.24 0.22 -0.61 16 7 C -0.26 -8.16 9.04 22.38 0.20 -7.95 16 8 C 0.15 5.75 6.68 22.49 0.15 5.90 16 9 O -0.32 -14.35 10.08 -92.46 -0.93 -15.29 16 10 C 0.09 4.03 4.27 71.98 0.31 4.34 16 11 C 0.21 11.13 2.99 44.17 0.13 11.26 16 12 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 13 N -0.84 -42.79 9.14 -171.80 -1.57 -44.36 16 14 C -0.57 -30.67 8.73 25.60 0.22 -30.45 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 16 C 0.02 1.05 5.38 84.66 0.46 1.50 16 17 N -0.92 -51.54 11.54 21.45 0.25 -51.30 16 18 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 C -0.22 -7.78 9.93 22.46 0.22 -7.56 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.08 0.98 7.66 -2.39 -0.02 0.97 16 27 H 0.08 0.98 7.66 -2.39 -0.02 0.96 16 28 H 0.16 2.49 6.29 -2.91 -0.02 2.47 16 29 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.13 4.00 6.29 -2.91 -0.02 3.98 16 31 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 32 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 33 H 0.34 18.65 7.08 -89.69 -0.63 18.01 16 34 H 0.32 15.10 8.99 -89.69 -0.81 14.29 16 35 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -63.40 304.28 1.89 -61.51 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.35 Total: 39.09 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.40 Total: -24.23 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -1.32 Total: -95.66 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -1.87 Total: -24.87 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -63.40 1.89 -61.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057501582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.825 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds