Wall clock time and date at job start Mon Mar 30 2020 04:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 C 1.53001 * 109.47568 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47445 * 179.97438 * 4 3 2 6 6 C 1.36038 * 117.00110 * 179.97438 * 5 4 3 7 7 C 1.36638 * 120.38414 * 359.97438 * 6 5 4 8 8 C 1.40261 * 119.24930 * 180.02562 * 7 6 5 9 9 C 1.35235 * 120.01616 * 359.72124 * 8 7 6 10 10 N 1.35949 * 120.78550 * 0.55591 * 9 8 7 11 11 C 1.46507 * 119.61967 * 179.71295 * 10 9 8 12 12 C 1.50697 * 109.47006 * 269.73202 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72165 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00108 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99667 * 16 14 12 20 20 C 1.34663 * 120.76106 * 359.44217 * 10 9 8 21 21 O 1.22080 * 120.02295 * 180.25221 * 20 10 9 22 22 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47226 * 300.00074 * 1 2 3 24 24 H 1.09004 * 109.46877 * 60.00053 * 1 2 3 25 25 H 1.08996 * 109.47331 * 239.99575 * 2 1 3 26 26 H 1.09002 * 109.47120 * 119.99461 * 2 1 3 27 27 H 1.09004 * 109.47078 * 59.99836 * 3 2 1 28 28 H 1.09004 * 109.47149 * 299.99780 * 3 2 1 29 29 H 1.09004 * 109.47001 * 59.99856 * 4 3 2 30 30 H 1.09004 * 109.46761 * 300.00085 * 4 3 2 31 31 H 1.08004 * 120.37120 * 0.04254 * 7 6 5 32 32 H 1.08007 * 119.99106 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.60652 * 180.26996 * 9 8 7 34 34 H 1.08998 * 109.47049 * 149.72631 * 11 10 9 35 35 H 1.09001 * 109.46896 * 29.72902 * 11 10 9 36 36 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3950 2.9681 0.0010 7 6 6.2346 1.8901 0.0031 8 6 7.6212 2.1014 0.0046 9 6 8.1136 3.3609 -0.0016 10 7 7.2792 4.4342 0.0019 11 6 7.8403 5.7876 0.0014 12 6 8.0309 6.2529 1.4220 13 1 7.7570 5.6072 2.2431 14 6 8.5503 7.5052 1.6734 15 7 8.8844 8.2914 0.6735 16 14 8.7794 8.0849 3.4343 17 1 8.3298 7.0215 4.3681 18 1 10.2144 8.3815 3.6750 19 1 7.9756 9.3132 3.6595 20 6 5.9429 4.2678 0.0004 21 8 5.2061 5.2412 -0.0010 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9286 -0.8891 30 1 3.9329 0.9288 0.8909 31 1 5.8350 0.8867 0.0032 32 1 8.2958 1.2580 0.0067 33 1 9.1824 3.5160 -0.0048 34 1 7.1580 6.4636 -0.5140 35 1 8.8022 5.7819 -0.5112 36 1 9.2501 9.1722 0.8504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057792483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:33 Heat of formation + Delta-G solvation = -77.885726 kcal Electronic energy + Delta-G solvation = -17994.857261 eV Core-core repulsion = 15057.625301 eV Total energy + Delta-G solvation = -2937.231961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.27434 -39.77289 -37.84508 -36.20603 -35.49007 -33.96375 -30.84219 -29.70337 -29.60010 -26.13665 -24.92978 -23.88223 -22.92989 -21.92585 -19.24924 -18.84816 -18.50071 -17.67186 -17.40893 -16.89072 -16.44676 -15.90446 -15.45167 -15.35229 -15.20685 -14.44560 -14.37288 -13.78141 -13.48956 -13.34458 -13.21338 -13.13332 -12.73808 -12.70887 -12.59832 -12.33430 -12.03589 -12.01325 -11.90361 -11.65429 -11.43774 -10.86943 -10.73910 -10.40735 -8.49533 -8.29985 -6.50702 0.05552 0.97167 1.34807 1.37938 1.48998 1.60802 2.31594 2.65174 2.77365 2.97349 3.70363 3.92826 3.96781 4.05733 4.10007 4.19286 4.31634 4.37258 4.39850 4.63363 4.67665 4.85603 4.91965 4.97452 5.01057 5.08323 5.14858 5.22700 5.28810 5.32828 5.44421 5.52561 5.79083 5.81686 6.18305 6.52698 6.56117 7.12777 7.23417 8.73897 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.004477 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.852476 B = 6252.101692 C = 6642.374018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.119 4.119 4 C 0.051 3.949 5 O -0.331 6.331 6 C -0.031 4.031 7 C -0.103 4.103 8 C -0.200 4.200 9 C 0.098 3.902 10 N -0.471 5.471 11 C 0.237 3.763 12 C -0.554 4.554 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.921 5.921 16 Si 0.974 3.026 17 H -0.270 1.270 18 H -0.261 1.261 19 H -0.281 1.281 20 C 0.488 3.512 21 O -0.607 6.607 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.174 0.826 32 H 0.193 0.807 33 H 0.183 0.817 34 H 0.013 0.987 35 H 0.058 0.942 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 -20.741 -1.292 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.157 4.157 4 C -0.024 4.024 5 O -0.245 6.245 6 C -0.079 4.079 7 C -0.126 4.126 8 C -0.222 4.222 9 C -0.028 4.028 10 N -0.180 5.180 11 C 0.118 3.882 12 C -0.591 4.591 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.798 3.202 17 H -0.194 1.194 18 H -0.186 1.186 19 H -0.206 1.206 20 C 0.290 3.710 21 O -0.494 6.494 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.192 0.808 32 H 0.210 0.790 33 H 0.201 0.799 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.213 -19.774 -1.351 20.771 hybrid contribution 0.028 0.969 0.632 1.157 sum -6.185 -18.805 -0.720 19.809 Atomic orbital electron populations 1.21773 0.94996 1.02481 1.01841 1.21403 0.96540 0.93670 1.03404 1.21610 0.92001 0.99302 1.02793 1.23171 0.95991 0.80532 1.02676 1.86063 1.17522 1.31370 1.89555 1.19464 0.84923 0.92921 1.10632 1.21785 0.93960 0.98505 0.98353 1.20845 0.94939 0.96177 1.10200 1.22582 0.97951 0.86390 0.95916 1.45659 1.06301 1.10502 1.55496 1.19453 0.93944 0.76710 0.98124 1.21485 1.43813 1.02078 0.91770 0.92887 1.25832 0.94244 0.95866 1.02521 1.70028 1.42775 1.09990 1.33101 0.85269 0.78585 0.78045 0.78330 1.19405 1.18553 1.20640 1.16892 0.82352 0.89857 0.81870 1.90885 1.59063 1.43625 1.55845 0.91145 0.93005 0.92870 0.90458 0.90638 0.92144 0.91897 0.90252 0.90585 0.80838 0.79001 0.79943 0.96903 0.92429 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.11 -1.55 5.93 30.59 0.18 -1.37 16 3 C -0.12 -2.49 5.58 30.59 0.17 -2.32 16 4 C 0.05 1.19 4.75 71.98 0.34 1.53 16 5 O -0.33 -12.55 9.94 -78.15 -0.78 -13.32 16 6 C -0.03 -1.22 6.71 22.58 0.15 -1.07 16 7 C -0.10 -2.81 9.09 22.39 0.20 -2.60 16 8 C -0.20 -4.91 10.00 22.07 0.22 -4.69 16 9 C 0.10 3.23 10.28 83.36 0.86 4.09 16 10 N -0.47 -21.73 2.57 -654.43 -1.68 -23.42 16 11 C 0.24 12.92 5.09 85.63 0.44 13.35 16 12 C -0.55 -32.15 9.38 25.60 0.24 -31.91 16 13 H 0.05 3.11 7.81 -2.92 -0.02 3.08 16 14 C 0.02 0.91 5.46 84.66 0.46 1.37 16 15 N -0.92 -54.56 13.29 21.45 0.28 -54.28 16 16 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 C 0.49 24.60 7.42 84.95 0.63 25.23 16 21 O -0.61 -37.32 16.44 10.25 0.17 -37.15 16 22 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.49 7.68 -2.39 -0.02 1.47 16 30 H 0.08 1.48 7.68 -2.39 -0.02 1.46 16 31 H 0.17 3.06 6.33 -2.91 -0.02 3.04 16 32 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.18 4.90 8.03 -2.91 -0.02 4.87 16 34 H 0.01 0.81 7.39 -2.39 -0.02 0.79 16 35 H 0.06 2.97 8.01 -2.39 -0.02 2.95 16 36 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -79.58 309.01 5.68 -73.90 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.05 Total: 7.26 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.61 Total: 0.32 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.40 Total: -77.70 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.61 Total: -50.47 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -79.58 5.68 -73.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.989 kcal (2) G-P(sol) polarization free energy of solvation -79.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds