Wall clock time and date at job start Mon Mar 30 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47504 * 2 1 4 4 C 1.53001 * 109.47011 * 120.00790 * 2 1 3 5 5 O 1.42896 * 109.47445 * 64.99539 * 4 2 1 6 6 C 1.36038 * 117.00110 * 179.97438 * 5 4 2 7 7 C 1.36638 * 120.38414 * 359.97438 * 6 5 4 8 8 C 1.40261 * 119.24930 * 180.02562 * 7 6 5 9 9 C 1.35235 * 120.01616 * 359.72124 * 8 7 6 10 10 N 1.35949 * 120.78550 * 0.55591 * 9 8 7 11 11 C 1.46507 * 119.61967 * 179.71295 * 10 9 8 12 12 C 1.50697 * 109.47006 * 269.73202 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72165 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.34663 * 120.76106 * 359.44217 * 10 9 8 21 21 O 1.22080 * 120.02295 * 180.25221 * 20 10 9 22 22 H 1.08992 * 109.47623 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46894 * 300.00050 * 1 2 3 24 24 H 1.08997 * 109.47121 * 59.99133 * 1 2 3 25 25 H 1.09001 * 109.46530 * 239.99844 * 2 1 3 26 26 H 1.08992 * 109.47092 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.47172 * 300.00411 * 3 2 1 28 28 H 1.09003 * 109.46638 * 60.00167 * 3 2 1 29 29 H 1.09004 * 109.47001 * 304.99433 * 4 2 1 30 30 H 1.09004 * 109.46761 * 184.99661 * 4 2 1 31 31 H 1.08004 * 120.37120 * 0.04254 * 7 6 5 32 32 H 1.08007 * 119.99106 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.60652 * 180.26996 * 9 8 7 34 34 H 1.08998 * 109.47049 * 149.72631 * 11 10 9 35 35 H 1.09001 * 109.46896 * 29.72902 * 11 10 9 36 36 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 1.6619 -2.0983 1.1918 6 6 2.0409 -2.8867 2.2337 7 6 2.7512 -2.3608 3.2757 8 6 3.1301 -3.1955 4.3373 9 6 2.7875 -4.5037 4.3249 10 7 2.0855 -5.0292 3.2860 11 6 1.7333 -6.4513 3.2959 12 6 2.8259 -7.2441 2.6262 13 1 3.6936 -6.7389 2.2286 14 6 2.7154 -8.6141 2.5164 15 7 1.6589 -9.2295 3.0011 16 14 4.0662 -9.5960 1.6795 17 1 5.3459 -9.3964 2.4058 18 1 3.7096 -11.0376 1.6907 19 1 4.2164 -9.1347 0.2760 20 6 1.7055 -4.2566 2.2506 21 8 1.0716 -4.7417 1.3269 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6054 -0.2619 2.1370 30 1 3.1263 -0.6445 1.2950 31 1 3.0176 -1.3142 3.2819 32 1 3.6922 -2.7925 5.1669 33 1 3.0790 -5.1394 5.1478 34 1 0.7965 -6.5973 2.7581 35 1 1.6177 -6.7898 4.3255 36 1 1.5814 -10.1933 2.9242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057792500.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:37 Heat of formation + Delta-G solvation = -54.556300 kcal Electronic energy + Delta-G solvation = -18285.205723 eV Core-core repulsion = 15348.985402 eV Total energy + Delta-G solvation = -2936.220321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70736 -38.57016 -36.11876 -35.42243 -33.63841 -32.11827 -28.83005 -27.69781 -27.25360 -26.62902 -23.86824 -22.55113 -21.64494 -20.16143 -17.88754 -17.01244 -16.75484 -16.22342 -15.91376 -15.12379 -14.84987 -14.48543 -14.20824 -13.85208 -13.75513 -13.14985 -12.80512 -12.40718 -12.28955 -11.92740 -11.62140 -11.48516 -11.45058 -11.30691 -11.17528 -10.94643 -10.75851 -10.68050 -10.62240 -10.29039 -9.83468 -9.09730 -8.78978 -8.57892 -6.91369 -6.20016 -4.27134 1.50201 2.46186 3.04532 3.26803 3.31140 3.35546 4.01160 4.28378 4.38386 4.69514 4.74001 4.98754 5.10578 5.16050 5.26146 5.32369 5.34861 5.41309 5.51619 5.59053 5.68675 5.72490 5.80558 5.92839 6.14956 6.28322 6.31521 6.46264 6.60402 6.84293 7.14677 7.30385 7.56126 7.74469 7.94146 8.06118 8.72051 8.86793 9.38554 10.88211 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.004942 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.663469 B = 5664.449436 C = 5968.151817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.063 3.937 5 O -0.292 6.292 6 C -0.003 4.003 7 C -0.137 4.137 8 C -0.237 4.237 9 C 0.130 3.870 10 N -0.464 5.464 11 C 0.223 3.777 12 C -0.537 4.537 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.518 3.482 21 O -0.530 6.530 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 17.648 1.411 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.012 4.012 5 O -0.205 6.205 6 C -0.052 4.052 7 C -0.159 4.159 8 C -0.260 4.260 9 C 0.000 4.000 10 N -0.174 5.174 11 C 0.106 3.894 12 C -0.575 4.575 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.199 1.199 20 C 0.316 3.684 21 O -0.411 6.411 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.175 0.825 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.597 17.029 0.634 17.115 hybrid contribution 0.981 -0.368 -0.141 1.058 sum 2.579 16.660 0.494 16.866 Atomic orbital electron populations 1.21816 0.94357 1.02978 1.01292 1.21104 0.97060 0.95472 0.97737 1.21771 1.01091 0.95005 1.02256 1.22840 0.99142 0.80505 0.98749 1.86097 1.74186 1.19513 1.40661 1.19701 1.03217 0.91836 0.90476 1.21200 1.00063 1.00241 0.94412 1.20105 1.11075 0.92887 1.01940 1.21888 0.91666 0.94843 0.91625 1.45809 1.42169 1.13550 1.15868 1.19928 0.99010 0.71036 0.99452 1.21208 1.05025 0.91907 1.39363 0.91989 1.24912 0.96217 0.97434 0.95109 1.69913 1.27911 1.09991 1.44980 0.86429 0.81466 0.78601 0.80255 1.19986 1.20938 1.19933 1.16064 0.83418 0.85182 0.83749 1.90958 1.41098 1.74773 1.34263 0.91406 0.92898 0.92715 0.90016 0.92447 0.91889 0.92455 0.92438 0.92461 0.85718 0.84710 0.82539 0.92143 0.93199 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.09 37.16 0.34 -1.31 16 2 C -0.10 -1.05 3.16 -90.62 -0.29 -1.34 16 3 C -0.14 -1.16 9.19 37.16 0.34 -0.82 16 4 C 0.06 0.82 4.13 37.16 0.15 0.97 16 5 O -0.29 -5.41 9.47 -36.42 -0.35 -5.75 16 6 C 0.00 -0.06 6.71 -39.10 -0.26 -0.32 16 7 C -0.14 -2.13 9.09 -39.40 -0.36 -2.49 16 8 C -0.24 -3.51 10.00 -39.89 -0.40 -3.91 16 9 C 0.13 2.26 10.28 -16.80 -0.17 2.09 16 10 N -0.46 -10.39 2.57 -120.87 -0.31 -10.71 16 11 C 0.22 5.76 5.09 -5.19 -0.03 5.74 16 12 C -0.54 -15.05 9.38 -34.44 -0.32 -15.38 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 16 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 C 0.52 12.37 7.42 -15.25 -0.11 12.26 16 21 O -0.53 -14.91 16.44 -11.71 -0.19 -15.11 16 22 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 23 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 30 H 0.06 0.66 7.68 -51.93 -0.40 0.27 16 31 H 0.12 1.53 6.33 -52.48 -0.33 1.20 16 32 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 33 H 0.16 2.31 8.03 -52.49 -0.42 1.89 16 34 H 0.06 1.75 7.39 -51.93 -0.38 1.36 16 35 H 0.05 1.23 8.01 -51.93 -0.42 0.82 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -33.00 307.61 -6.96 -39.96 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.26 Total: -1.84 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.21 Total: -2.74 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.43 Total: -35.70 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.54 Total: -20.86 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.00 -6.96 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792500.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.594 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds