Wall clock time and date at job start Mon Mar 30 2020 04:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47504 * 2 1 4 4 C 1.53001 * 109.47011 * 120.00790 * 2 1 3 5 5 O 1.42896 * 109.47445 * 64.99539 * 4 2 1 6 6 C 1.36038 * 117.00110 * 179.97438 * 5 4 2 7 7 C 1.36638 * 120.38414 * 359.97438 * 6 5 4 8 8 C 1.40261 * 119.24930 * 180.02562 * 7 6 5 9 9 C 1.35235 * 120.01616 * 359.72124 * 8 7 6 10 10 N 1.35949 * 120.78550 * 0.55591 * 9 8 7 11 11 C 1.46507 * 119.61967 * 179.71295 * 10 9 8 12 12 C 1.50697 * 109.47006 * 269.73202 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72165 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.34663 * 120.76106 * 359.44217 * 10 9 8 21 21 O 1.22080 * 120.02295 * 180.25221 * 20 10 9 22 22 H 1.08992 * 109.47623 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46894 * 300.00050 * 1 2 3 24 24 H 1.08997 * 109.47121 * 59.99133 * 1 2 3 25 25 H 1.09001 * 109.46530 * 239.99844 * 2 1 3 26 26 H 1.08992 * 109.47092 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.47172 * 300.00411 * 3 2 1 28 28 H 1.09003 * 109.46638 * 60.00167 * 3 2 1 29 29 H 1.09004 * 109.47001 * 304.99433 * 4 2 1 30 30 H 1.09004 * 109.46761 * 184.99661 * 4 2 1 31 31 H 1.08004 * 120.37120 * 0.04254 * 7 6 5 32 32 H 1.08007 * 119.99106 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.60652 * 180.26996 * 9 8 7 34 34 H 1.08998 * 109.47049 * 149.72631 * 11 10 9 35 35 H 1.09001 * 109.46896 * 29.72902 * 11 10 9 36 36 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 1.6619 -2.0983 1.1918 6 6 2.0409 -2.8867 2.2337 7 6 2.7512 -2.3608 3.2757 8 6 3.1301 -3.1955 4.3373 9 6 2.7875 -4.5037 4.3249 10 7 2.0855 -5.0292 3.2860 11 6 1.7333 -6.4513 3.2959 12 6 2.8259 -7.2441 2.6262 13 1 3.6936 -6.7389 2.2286 14 6 2.7154 -8.6141 2.5164 15 7 1.6589 -9.2295 3.0011 16 14 4.0662 -9.5960 1.6795 17 1 5.3459 -9.3964 2.4058 18 1 3.7096 -11.0376 1.6907 19 1 4.2164 -9.1347 0.2760 20 6 1.7055 -4.2566 2.2506 21 8 1.0716 -4.7417 1.3269 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6054 -0.2619 2.1370 30 1 3.1263 -0.6445 1.2950 31 1 3.0176 -1.3142 3.2819 32 1 3.6922 -2.7925 5.1669 33 1 3.0790 -5.1394 5.1478 34 1 0.7965 -6.5973 2.7581 35 1 1.6177 -6.7898 4.3255 36 1 1.5814 -10.1933 2.9242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057792500.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:36 Heat of formation + Delta-G solvation = -75.221119 kcal Electronic energy + Delta-G solvation = -18286.101817 eV Core-core repulsion = 15348.985402 eV Total energy + Delta-G solvation = -2937.116415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27201 -39.86980 -37.83957 -36.44930 -35.45808 -33.91316 -30.27314 -29.64365 -28.06679 -27.67451 -25.73392 -24.00716 -23.26825 -21.12724 -19.28746 -18.84523 -18.49719 -17.71921 -17.19226 -16.88709 -16.30104 -15.95890 -15.56769 -15.26782 -14.97890 -14.38696 -14.28440 -13.78880 -13.52189 -13.34229 -13.12815 -13.02205 -12.76856 -12.71264 -12.64322 -12.41806 -12.29818 -12.04734 -11.79818 -11.59791 -11.51537 -10.86104 -10.73106 -10.40023 -8.48609 -8.29289 -6.50367 0.06238 0.97697 1.35250 1.40061 1.46987 1.61460 2.31918 2.67230 2.78043 2.97905 3.68966 3.85939 3.91955 4.05858 4.11522 4.15110 4.32299 4.42113 4.56093 4.65697 4.68944 4.80083 4.96071 4.98749 5.01710 5.05681 5.15360 5.20075 5.28493 5.37351 5.41920 5.52513 5.79456 5.82023 6.19253 6.53432 6.56210 7.13315 7.23892 8.74053 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.004942 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.663469 B = 5664.449436 C = 5968.151817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.136 4.136 4 C 0.054 3.946 5 O -0.325 6.325 6 C -0.029 4.029 7 C -0.105 4.105 8 C -0.199 4.199 9 C 0.098 3.902 10 N -0.470 5.470 11 C 0.238 3.762 12 C -0.555 4.555 13 H 0.053 0.947 14 C 0.017 3.983 15 N -0.921 5.921 16 Si 0.972 3.028 17 H -0.255 1.255 18 H -0.273 1.273 19 H -0.282 1.282 20 C 0.489 3.511 21 O -0.606 6.606 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.192 0.808 33 H 0.183 0.817 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 20.207 3.088 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.193 4.193 4 C -0.021 4.021 5 O -0.240 6.240 6 C -0.078 4.078 7 C -0.128 4.128 8 C -0.221 4.221 9 C -0.029 4.029 10 N -0.179 5.179 11 C 0.118 3.882 12 C -0.593 4.593 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.559 5.559 16 Si 0.796 3.204 17 H -0.179 1.179 18 H -0.197 1.197 19 H -0.208 1.208 20 C 0.291 3.709 21 O -0.494 6.494 22 H 0.049 0.951 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.191 0.809 32 H 0.209 0.791 33 H 0.200 0.800 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.231 19.634 2.377 20.225 hybrid contribution 0.183 -1.022 -0.579 1.189 sum 4.414 18.612 1.798 19.213 Atomic orbital electron populations 1.21805 0.94905 1.00927 1.02716 1.21174 0.96678 0.97243 0.96426 1.21725 1.01658 0.92476 1.03416 1.23251 1.00476 0.77929 1.00406 1.86074 1.75010 1.21978 1.40890 1.19469 1.05454 0.90223 0.92642 1.21770 0.96380 1.02459 0.92170 1.20834 1.07895 0.91151 1.02254 1.22567 0.92269 0.96867 0.91213 1.45648 1.42969 1.12128 1.17181 1.19442 0.96536 0.73556 0.98661 1.21430 1.05274 0.92690 1.39935 0.92863 1.25819 0.98613 0.98421 0.95487 1.70015 1.29561 1.10498 1.45806 0.85397 0.79164 0.77304 0.78560 1.17909 1.19735 1.20757 1.16886 0.83437 0.87230 0.83376 1.90887 1.45106 1.76302 1.37100 0.95133 0.91606 0.91186 0.91742 0.91476 0.90958 0.91105 0.90393 0.90642 0.80949 0.79074 0.80012 0.96931 0.92473 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.09 71.98 0.65 -2.57 16 2 C -0.10 -2.01 3.16 -10.79 -0.03 -2.04 16 3 C -0.14 -1.76 9.19 71.98 0.66 -1.09 16 4 C 0.05 1.27 4.13 71.98 0.30 1.57 16 5 O -0.33 -12.24 9.47 -78.15 -0.74 -12.98 16 6 C -0.03 -1.15 6.71 22.58 0.15 -1.00 16 7 C -0.11 -2.86 9.09 22.39 0.20 -2.66 16 8 C -0.20 -4.93 10.00 22.07 0.22 -4.71 16 9 C 0.10 3.22 10.28 83.36 0.86 4.07 16 10 N -0.47 -21.71 2.57 -654.43 -1.68 -23.40 16 11 C 0.24 12.95 5.09 85.63 0.44 13.39 16 12 C -0.56 -32.27 9.38 25.60 0.24 -32.03 16 13 H 0.05 3.10 7.81 -2.92 -0.02 3.08 16 14 C 0.02 0.98 5.46 84.66 0.46 1.45 16 15 N -0.92 -54.64 13.29 21.45 0.28 -54.36 16 16 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 17 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 C 0.49 24.58 7.42 84.95 0.63 25.21 16 21 O -0.61 -37.28 16.44 10.25 0.17 -37.11 16 22 H 0.03 0.88 7.82 -2.39 -0.02 0.86 16 23 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.50 7.68 -2.39 -0.02 1.48 16 30 H 0.08 1.48 7.68 -2.39 -0.02 1.46 16 31 H 0.17 3.08 6.33 -2.91 -0.02 3.06 16 32 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.18 4.91 8.03 -2.91 -0.02 4.89 16 34 H 0.01 0.79 7.39 -2.39 -0.02 0.77 16 35 H 0.06 2.96 8.01 -2.39 -0.02 2.94 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.49 307.61 5.89 -73.60 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.05 Total: 8.03 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.78 Total: -0.42 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.40 Total: -77.75 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.57 Total: -50.09 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.49 5.89 -73.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792500.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.619 kcal (2) G-P(sol) polarization free energy of solvation -79.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds