Wall clock time and date at job start Mon Mar 30 2020 04:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 O 1.42902 * 109.46634 * 180.02562 * 3 2 1 5 5 C 1.36039 * 116.99532 * 180.02562 * 4 3 2 6 6 C 1.36631 * 120.38704 * 0.02562 * 5 4 3 7 7 C 1.40275 * 119.25101 * 180.02562 * 6 5 4 8 8 C 1.35236 * 120.01332 * 359.97438 * 7 6 5 9 9 N 1.35950 * 120.78987 * 0.28006 * 8 7 6 10 10 C 1.46498 * 119.61969 * 179.72168 * 9 8 7 11 11 C 1.52991 * 109.47184 * 89.99763 * 10 9 8 12 12 C 1.50704 * 109.47364 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99759 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00262 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00442 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00094 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46732 * 90.00531 * 16 14 12 18 18 H 1.48501 * 109.47236 * 210.00360 * 16 14 12 19 19 H 1.48502 * 109.47191 * 330.00821 * 16 14 12 20 20 C 1.34672 * 120.75706 * 359.47797 * 9 8 7 21 21 O 1.22085 * 120.01987 * 180.23547 * 20 9 8 22 22 H 1.09003 * 109.47174 * 59.99457 * 1 2 3 23 23 H 1.08994 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47234 * 299.99918 * 1 2 3 25 25 H 1.09004 * 109.47080 * 240.00365 * 2 1 3 26 26 H 1.08998 * 109.46779 * 120.00310 * 2 1 3 27 27 H 1.08990 * 109.47030 * 60.00425 * 3 2 1 28 28 H 1.08995 * 109.47063 * 299.99902 * 3 2 1 29 29 H 1.08000 * 120.37473 * 0.04164 * 6 5 4 30 30 H 1.07992 * 119.99418 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.60100 * 179.97438 * 8 7 6 32 32 H 1.09008 * 109.47006 * 209.99957 * 10 9 8 33 33 H 1.08997 * 109.47205 * 329.99738 * 10 9 8 34 34 H 1.08996 * 109.47593 * 300.00242 * 11 10 9 35 35 H 1.09012 * 109.47376 * 60.00269 * 11 10 9 36 36 H 0.96998 * 120.00544 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0866 2.6545 -0.0001 6 6 3.3502 3.8054 0.0014 7 6 4.0117 5.0424 0.0013 8 6 5.3633 5.0867 0.0002 9 7 6.0971 3.9423 -0.0065 10 6 7.5600 4.0202 -0.0137 11 6 8.0766 4.0436 1.4262 12 6 9.5815 4.1231 1.4189 13 1 10.1160 4.1543 0.4809 14 6 10.2759 4.1571 2.6095 15 7 9.6251 4.1197 3.7517 16 14 12.1412 4.2564 2.6003 17 1 12.5611 5.6808 2.6014 18 1 12.6789 3.5809 3.8086 19 1 12.6667 3.5865 1.3836 20 6 5.4947 2.7378 -0.0017 21 8 6.1669 1.7187 -0.0034 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 2.2711 3.7632 0.0029 30 1 3.4415 5.9595 0.0021 31 1 5.8658 6.0427 -0.0003 32 1 7.9676 3.1520 -0.5319 33 1 7.8729 4.9295 -0.5267 34 1 7.6691 4.9116 1.9444 35 1 7.7637 3.1341 1.9394 36 1 10.1136 4.1432 4.5893 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057879434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:24 Heat of formation + Delta-G solvation = -54.556881 kcal Electronic energy + Delta-G solvation = -18014.080632 eV Core-core repulsion = 15077.860286 eV Total energy + Delta-G solvation = -2936.220346 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06108 -38.67320 -36.46644 -34.63676 -33.75157 -32.60066 -29.72471 -29.07862 -26.85644 -25.38303 -23.17004 -22.77988 -21.60992 -20.72348 -18.08871 -17.30696 -16.69561 -16.38080 -16.26674 -15.15878 -15.01884 -14.55810 -14.42888 -14.10385 -13.80582 -13.15353 -12.84302 -12.46359 -12.31186 -12.12841 -11.86886 -11.77683 -11.68897 -11.24859 -11.04764 -10.97441 -10.85041 -10.62968 -10.08924 -9.99166 -9.55666 -9.23191 -9.03171 -8.42783 -7.19649 -6.07107 -4.11740 1.20447 2.18104 2.72234 3.29401 3.36147 3.39860 3.69303 3.98467 4.41685 4.68119 4.71771 4.89174 5.02638 5.03958 5.09908 5.21994 5.29279 5.31216 5.38483 5.46589 5.73353 5.78219 5.88116 5.97771 6.09422 6.20230 6.25531 6.37197 6.58881 6.86597 7.25238 7.48946 7.56515 7.73085 7.89529 8.24286 8.48250 8.93626 9.52798 11.04312 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.036084 B = 0.004294 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.788941 B = 6519.016685 C = 6893.093181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.294 6.294 5 C 0.006 3.994 6 C -0.137 4.137 7 C -0.219 4.219 8 C 0.116 3.884 9 N -0.477 5.477 10 C 0.094 3.906 11 C 0.013 3.987 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.520 3.480 21 O -0.528 6.528 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.021 0.979 35 H 0.027 0.973 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 0.634 -8.192 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.206 6.206 5 C -0.043 4.043 6 C -0.160 4.160 7 C -0.243 4.243 8 C -0.012 4.012 9 N -0.188 5.188 10 C -0.025 4.025 11 C -0.024 4.024 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.318 3.682 21 O -0.409 6.409 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.178 0.822 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.710 -0.252 -8.010 18.532 hybrid contribution 0.668 0.416 0.237 0.822 sum -16.042 0.163 -7.773 17.826 Atomic orbital electron populations 1.21683 0.94392 1.02384 1.02065 1.21472 0.95718 0.95022 1.03984 1.22852 0.79089 0.98719 1.01063 1.86115 1.20200 1.25490 1.88815 1.19618 0.92254 0.85422 1.06992 1.21273 1.00099 0.91951 1.02662 1.20184 0.92769 0.97847 1.13462 1.21885 0.92532 0.90997 0.95760 1.45622 1.10550 1.05304 1.57355 1.22518 0.73271 1.03195 1.03502 1.19420 0.96365 0.98324 0.88334 1.20996 0.90828 1.51730 0.92745 0.92223 1.25003 0.98817 0.94928 0.95469 1.69971 1.35748 1.49846 0.97367 0.86500 0.85127 0.78100 0.77736 1.20578 1.21117 1.19698 1.16109 0.86939 0.83749 0.81451 1.90995 1.65863 1.32797 1.51203 0.92481 0.91823 0.92397 0.90778 0.90659 0.92213 0.92326 0.85259 0.84228 0.82217 0.89143 0.89973 0.96077 0.95481 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -1.22 6.30 -26.73 -0.17 -1.39 16 3 C 0.06 0.67 4.75 37.16 0.18 0.85 16 4 O -0.29 -5.04 9.94 -36.42 -0.36 -5.41 16 5 C 0.01 0.11 6.71 -39.10 -0.26 -0.15 16 6 C -0.14 -1.89 9.09 -39.40 -0.36 -2.24 16 7 C -0.22 -2.78 10.01 -39.89 -0.40 -3.18 16 8 C 0.12 1.69 10.28 -16.80 -0.17 1.52 16 9 N -0.48 -9.06 2.59 -119.57 -0.31 -9.37 16 10 C 0.09 1.97 5.27 -4.05 -0.02 1.95 16 11 C 0.01 0.34 5.30 -27.89 -0.15 0.20 16 12 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.52 11.04 7.42 -15.24 -0.11 10.92 16 21 O -0.53 -13.42 16.44 -11.71 -0.19 -13.61 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 28 H 0.06 0.57 7.68 -51.93 -0.40 0.18 16 29 H 0.13 1.36 6.33 -52.49 -0.33 1.03 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.16 1.86 8.04 -52.49 -0.42 1.44 16 32 H 0.09 2.01 7.40 -51.92 -0.38 1.62 16 33 H 0.08 1.46 8.01 -51.93 -0.42 1.04 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -34.49 308.96 -7.28 -41.76 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.27 Total: -2.84 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.51 Total: -5.57 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.43 Total: -35.53 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.55 Total: -19.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.49 -7.28 -41.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057879434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.794 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds