Wall clock time and date at job start Mon Mar 30 2020 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 O 1.42902 * 109.46634 * 180.02562 * 3 2 1 5 5 C 1.36039 * 116.99532 * 180.02562 * 4 3 2 6 6 C 1.36631 * 120.38704 * 0.02562 * 5 4 3 7 7 C 1.40275 * 119.25101 * 180.02562 * 6 5 4 8 8 C 1.35236 * 120.01332 * 359.97438 * 7 6 5 9 9 N 1.35950 * 120.78987 * 0.28006 * 8 7 6 10 10 C 1.46498 * 119.61969 * 179.72168 * 9 8 7 11 11 C 1.52991 * 109.47184 * 89.99763 * 10 9 8 12 12 C 1.50704 * 109.47364 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99759 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00262 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00442 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00094 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46732 * 90.00531 * 16 14 12 18 18 H 1.48501 * 109.47236 * 210.00360 * 16 14 12 19 19 H 1.48502 * 109.47191 * 330.00821 * 16 14 12 20 20 C 1.34672 * 120.75706 * 359.47797 * 9 8 7 21 21 O 1.22085 * 120.01987 * 180.23547 * 20 9 8 22 22 H 1.09003 * 109.47174 * 59.99457 * 1 2 3 23 23 H 1.08994 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47234 * 299.99918 * 1 2 3 25 25 H 1.09004 * 109.47080 * 240.00365 * 2 1 3 26 26 H 1.08998 * 109.46779 * 120.00310 * 2 1 3 27 27 H 1.08990 * 109.47030 * 60.00425 * 3 2 1 28 28 H 1.08995 * 109.47063 * 299.99902 * 3 2 1 29 29 H 1.08000 * 120.37473 * 0.04164 * 6 5 4 30 30 H 1.07992 * 119.99418 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.60100 * 179.97438 * 8 7 6 32 32 H 1.09008 * 109.47006 * 209.99957 * 10 9 8 33 33 H 1.08997 * 109.47205 * 329.99738 * 10 9 8 34 34 H 1.08996 * 109.47593 * 300.00242 * 11 10 9 35 35 H 1.09012 * 109.47376 * 60.00269 * 11 10 9 36 36 H 0.96998 * 120.00544 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0866 2.6545 -0.0001 6 6 3.3502 3.8054 0.0014 7 6 4.0117 5.0424 0.0013 8 6 5.3633 5.0867 0.0002 9 7 6.0971 3.9423 -0.0065 10 6 7.5600 4.0202 -0.0137 11 6 8.0766 4.0436 1.4262 12 6 9.5815 4.1231 1.4189 13 1 10.1160 4.1543 0.4809 14 6 10.2759 4.1571 2.6095 15 7 9.6251 4.1197 3.7517 16 14 12.1412 4.2564 2.6003 17 1 12.5611 5.6808 2.6014 18 1 12.6789 3.5809 3.8086 19 1 12.6667 3.5865 1.3836 20 6 5.4947 2.7378 -0.0017 21 8 6.1669 1.7187 -0.0034 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 2.2711 3.7632 0.0029 30 1 3.4415 5.9595 0.0021 31 1 5.8658 6.0427 -0.0003 32 1 7.9676 3.1520 -0.5319 33 1 7.8729 4.9295 -0.5267 34 1 7.6691 4.9116 1.9444 35 1 7.7637 3.1341 1.9394 36 1 10.1136 4.1432 4.5893 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057879434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:23 Heat of formation + Delta-G solvation = -76.598904 kcal Electronic energy + Delta-G solvation = -18015.036446 eV Core-core repulsion = 15077.860286 eV Total energy + Delta-G solvation = -2937.176160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.43720 -39.85642 -37.98313 -36.14163 -34.96829 -34.23738 -31.58013 -30.33134 -27.80700 -27.14715 -24.62409 -24.10598 -22.92908 -22.05360 -19.37431 -18.72853 -18.51204 -17.72081 -17.45666 -16.72302 -16.50238 -16.17225 -15.58597 -15.37916 -14.86614 -14.79304 -14.37581 -13.90108 -13.66004 -13.32072 -13.03450 -13.00561 -12.86399 -12.75329 -12.64288 -12.41372 -12.04328 -11.88715 -11.84172 -11.54666 -11.49912 -10.97862 -10.62552 -10.46719 -8.52033 -8.26020 -6.39607 -0.04688 0.89042 1.38075 1.42149 1.44438 1.53874 2.37462 2.55106 2.65580 3.08110 3.62064 3.93158 3.94544 3.95746 4.08096 4.12068 4.25942 4.34322 4.44893 4.48808 4.56565 4.71195 4.79312 4.84080 5.07790 5.12440 5.17748 5.21942 5.33127 5.36051 5.42092 5.62571 5.75681 6.04248 6.09080 6.40660 6.74995 7.02634 7.30617 8.86364 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.036084 B = 0.004294 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.788941 B = 6519.016685 C = 6893.093181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.050 3.950 4 O -0.331 6.331 5 C -0.029 4.029 6 C -0.105 4.105 7 C -0.194 4.194 8 C 0.093 3.907 9 N -0.479 5.479 10 C 0.109 3.891 11 C 0.024 3.976 12 C -0.544 4.544 13 H 0.072 0.928 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.264 1.264 20 C 0.491 3.509 21 O -0.602 6.602 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.193 0.807 31 H 0.195 0.805 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.011 0.989 35 H -0.028 1.028 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.905 3.291 -9.191 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.024 4.024 4 O -0.245 6.245 5 C -0.078 4.078 6 C -0.127 4.127 7 C -0.216 4.216 8 C -0.032 4.032 9 N -0.190 5.190 10 C -0.011 4.011 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.090 0.910 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.188 1.188 20 C 0.293 3.707 21 O -0.489 6.489 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.190 0.810 30 H 0.210 0.790 31 H 0.212 0.788 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.029 0.971 35 H -0.010 1.010 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.353 2.465 -9.028 20.601 hybrid contribution 1.006 -0.333 0.557 1.197 sum -17.346 2.132 -8.471 19.422 Atomic orbital electron populations 1.21651 0.91746 1.03280 1.03082 1.21529 0.97833 0.94130 1.02847 1.23221 0.76470 1.00043 1.02700 1.86074 1.23093 1.25951 1.89420 1.19495 0.90861 0.87164 1.10243 1.21832 1.02063 0.90710 0.98133 1.20897 0.92104 0.99285 1.09273 1.22678 0.93733 0.90596 0.96241 1.45543 1.09901 1.06342 1.57176 1.22130 0.75006 1.04029 0.99933 1.19193 0.96080 0.94974 0.91081 1.21476 0.91987 1.51354 0.93427 0.91023 1.26042 1.04503 0.94288 0.94971 1.70118 1.38031 1.50952 0.98170 0.85318 0.78240 0.78910 0.77796 1.18745 1.21154 1.18785 1.16879 0.88675 0.83568 0.81585 1.90925 1.67392 1.35013 1.55551 0.91190 0.91082 0.91557 0.91679 0.92206 0.90742 0.90045 0.81019 0.78966 0.78829 0.91417 0.85964 0.97061 1.00989 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.13 -2.43 6.30 30.60 0.19 -2.24 16 3 C 0.05 1.09 4.75 71.98 0.34 1.43 16 4 O -0.33 -11.72 9.94 -78.16 -0.78 -12.50 16 5 C -0.03 -1.04 6.71 22.58 0.15 -0.89 16 6 C -0.10 -2.51 9.09 22.39 0.20 -2.31 16 7 C -0.19 -3.97 10.01 22.07 0.22 -3.75 16 8 C 0.09 2.45 10.28 83.36 0.86 3.31 16 9 N -0.48 -18.43 2.59 -650.34 -1.68 -20.11 16 10 C 0.11 4.68 5.27 86.38 0.46 5.14 16 11 C 0.02 1.33 5.30 29.85 0.16 1.49 16 12 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 13 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 14 C 0.00 0.01 5.46 84.65 0.46 0.48 16 15 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 16 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 20 C 0.49 21.96 7.42 84.95 0.63 22.59 16 21 O -0.60 -33.47 16.44 10.23 0.17 -33.30 16 22 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.36 7.67 -2.39 -0.02 1.34 16 28 H 0.08 1.36 7.68 -2.39 -0.02 1.34 16 29 H 0.17 2.64 6.33 -2.91 -0.02 2.62 16 30 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.19 3.70 8.04 -2.91 -0.02 3.68 16 32 H 0.07 3.19 7.40 -2.38 -0.02 3.17 16 33 H 0.12 4.18 8.01 -2.39 -0.02 4.16 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H -0.03 -1.84 8.14 -2.38 -0.02 -1.86 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -82.76 308.96 5.69 -77.07 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.05 Total: 6.55 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.62 Total: -6.59 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.40 Total: -77.71 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.61 Total: -45.80 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -82.76 5.69 -77.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057879434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.470 kcal (2) G-P(sol) polarization free energy of solvation -82.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds