Wall clock time and date at job start Mon Mar 30 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35999 * 116.99812 * 2 1 4 4 C 1.38564 * 120.07304 * 0.27570 * 3 2 1 5 5 C 1.38244 * 119.99751 * 180.25690 * 4 3 2 6 6 C 1.50706 * 119.92535 * 179.76253 * 5 4 3 7 7 N 1.46899 * 109.47141 * 269.72332 * 6 5 4 8 8 C 1.46904 * 110.99846 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.47078 * 34.99919 * 8 7 6 10 10 C 1.53000 * 109.47015 * 275.00091 * 8 7 6 11 11 C 1.50696 * 109.46794 * 154.99634 * 8 7 6 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99717 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.38245 * 120.14677 * 359.48504 * 5 4 3 20 20 C 1.38241 * 120.14835 * 0.23595 * 19 5 4 21 21 C 1.38567 * 119.99741 * 0.02562 * 20 19 5 22 22 O 1.36000 * 120.07184 * 180.02562 * 21 20 19 23 23 H 1.09008 * 109.47093 * 60.00330 * 1 2 3 24 24 H 1.09005 * 109.47071 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47566 * 300.00528 * 1 2 3 26 26 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 27 27 H 1.08998 * 109.46630 * 149.72205 * 6 5 4 28 28 H 1.08996 * 109.47184 * 29.72541 * 6 5 4 29 29 H 1.00902 * 110.99927 * 303.95259 * 7 6 5 30 30 H 1.08997 * 109.46749 * 299.99841 * 10 8 7 31 31 H 1.08996 * 109.47024 * 59.99984 * 10 8 7 32 32 H 1.08998 * 109.46637 * 179.97438 * 10 8 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.08004 * 119.93121 * 180.25551 * 19 5 4 35 35 H 1.08003 * 120.00199 * 180.02562 * 20 19 5 36 36 H 0.96697 * 113.99593 * 89.99568 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0058 5 6 1.9223 3.6058 0.0004 6 6 1.1014 4.8697 0.0013 7 7 0.8343 5.2810 -1.3834 8 6 0.0350 6.5129 -1.4217 9 1 0.3199 7.1570 -0.5897 10 6 -1.4498 6.1612 -1.3091 11 6 0.2836 7.2327 -2.7221 12 1 0.9667 6.8165 -3.4477 13 6 -0.3619 8.4222 -2.9860 14 7 -0.1454 9.0502 -4.1210 15 14 -1.5439 9.1417 -1.7312 16 1 -2.9132 8.6284 -1.9897 17 1 -1.1167 8.7463 -0.3650 18 1 -1.5416 10.6227 -1.8413 19 6 3.3028 3.6799 0.0000 20 6 4.0602 2.5235 0.0001 21 6 3.4358 1.2864 0.0000 22 8 4.1795 0.1478 0.0006 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2145 2.3197 0.0099 27 1 1.6501 5.6588 0.5153 28 1 0.1574 4.6894 0.5153 29 1 1.6940 5.3919 -1.8999 30 1 -1.7347 5.5172 -2.1411 31 1 -1.6295 5.6405 -0.3685 32 1 -2.0428 7.0753 -1.3371 33 1 -0.5998 9.8868 -4.3068 34 1 3.7907 4.6435 0.0000 35 1 5.1385 2.5842 0.0002 36 1 4.3941 -0.1813 0.8841 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068608782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:56 Heat of formation + Delta-G solvation = -49.514937 kcal Electronic energy + Delta-G solvation = -18083.348999 eV Core-core repulsion = 15147.347288 eV Total energy + Delta-G solvation = -2936.001711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38774 -37.88997 -37.20985 -35.64205 -32.64053 -30.95078 -30.16248 -28.69995 -27.25463 -25.36060 -24.16907 -22.32302 -21.28059 -19.92842 -18.61820 -17.40240 -16.77161 -16.42595 -15.95580 -15.45551 -15.16695 -14.29122 -14.22168 -14.00998 -13.80947 -13.67521 -12.90186 -12.51479 -12.25270 -12.19916 -12.10289 -11.68606 -11.54606 -11.07973 -10.90220 -10.86902 -10.63162 -10.47069 -10.13694 -9.54309 -9.08407 -8.70426 -8.64274 -8.08179 -7.55497 -6.12803 -4.13098 1.23953 1.42130 3.19523 3.23964 3.32921 3.35806 3.64121 4.19316 4.35191 4.79226 4.89098 5.04275 5.11212 5.18186 5.20300 5.31411 5.42277 5.43842 5.60793 5.76084 5.85040 6.04527 6.22829 6.31294 6.33985 6.48389 6.66131 6.67782 6.74339 6.75972 7.17875 7.33453 7.52755 7.71842 7.86821 8.28051 8.56838 8.91924 9.48842 11.00153 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.034323 B = 0.004664 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.592067 B = 6001.499210 C = 6414.065209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.100 3.900 4 C -0.174 4.174 5 C -0.035 4.035 6 C 0.091 3.909 7 N -0.672 5.672 8 C 0.181 3.819 9 H 0.002 0.998 10 C -0.138 4.138 11 C -0.521 4.521 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.297 1.297 19 C -0.136 4.136 20 C -0.106 4.106 21 C 0.062 3.938 22 O -0.488 6.488 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.342 0.658 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 -14.823 12.398 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.054 3.946 4 C -0.193 4.193 5 C -0.036 4.036 6 C -0.038 4.038 7 N -0.304 5.304 8 C 0.073 3.927 9 H 0.019 0.981 10 C -0.195 4.195 11 C -0.559 4.559 12 H 0.097 0.903 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.194 1.194 18 H -0.225 1.225 19 C -0.155 4.155 20 C -0.125 4.125 21 C 0.017 3.983 22 O -0.296 6.296 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.233 -15.199 11.593 19.387 hybrid contribution -0.324 1.214 1.266 1.784 sum 2.909 -13.985 12.858 19.219 Atomic orbital electron populations 1.23084 0.78493 1.03716 1.01740 1.86105 1.21232 1.26386 1.88812 1.19431 0.91668 0.84833 0.98660 1.21056 1.00242 0.91081 1.06921 1.19828 0.93539 0.94756 0.95471 1.20965 0.97689 0.92061 0.93059 1.60592 1.23804 1.36710 1.09313 1.19561 0.90037 0.85957 0.97175 0.98055 1.22076 0.98643 0.99452 0.99358 1.21091 1.27513 1.05605 1.01698 0.90303 1.24935 0.96431 0.96526 0.95164 1.69893 1.43174 1.17152 1.23295 0.86797 0.81595 0.77044 0.82355 1.20491 1.19407 1.22494 1.20919 0.93218 0.98248 1.03100 1.21172 1.00314 0.90813 1.00177 1.17702 0.86107 0.86457 1.08062 1.84907 1.71877 1.39987 1.32869 0.92204 0.88401 0.92731 0.84899 0.94727 0.90897 0.83932 0.92306 0.95634 0.94423 0.92532 0.85428 0.84916 0.76516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.13 10.28 -34.24 -0.35 -4.49 16 3 C 0.10 1.41 6.70 -39.12 -0.26 1.14 16 4 C -0.17 -2.46 8.69 -39.46 -0.34 -2.81 16 5 C -0.04 -0.52 5.39 -104.61 -0.56 -1.09 16 6 C 0.09 1.51 5.61 -4.97 -0.03 1.48 16 7 N -0.67 -13.58 6.29 -109.22 -0.69 -14.26 16 8 C 0.18 4.24 2.19 -68.86 -0.15 4.09 16 9 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 10 C -0.14 -3.02 8.89 37.16 0.33 -2.69 16 11 C -0.52 -14.47 9.17 -34.44 -0.32 -14.78 16 12 H 0.08 2.37 7.86 -52.49 -0.41 1.96 16 13 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 14 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 15 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 16 16 H -0.28 -6.64 6.87 56.52 0.39 -6.26 16 17 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 18 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 19 C -0.14 -1.84 9.69 -39.58 -0.38 -2.22 16 20 C -0.11 -1.34 9.98 -39.46 -0.39 -1.73 16 21 C 0.06 0.84 6.72 -39.12 -0.26 0.58 16 22 O -0.49 -6.00 13.29 -34.24 -0.46 -6.45 16 23 H 0.06 0.59 7.68 -51.92 -0.40 0.19 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.13 1.75 6.30 -52.49 -0.33 1.41 16 27 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 28 H 0.07 1.16 7.38 -51.93 -0.38 0.78 16 29 H 0.34 7.03 8.21 -39.29 -0.32 6.70 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.02 0.48 7.45 -51.93 -0.39 0.09 16 32 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.38 2.79 9.06 45.56 0.41 3.20 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -32.15 297.43 -5.89 -38.04 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.03 Total: 6.30 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.48 Total: -14.85 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.09 Total: -40.71 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.81 Total: -10.94 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.15 -5.89 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068608782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.476 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds