Wall clock time and date at job start Mon Mar 30 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35908 * 116.99947 * 2 1 4 4 C 1.38724 * 120.05571 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94478 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05358 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.94259 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46912 * 340.00028 * 7 6 5 9 9 O 1.42905 * 109.46684 * 220.00111 * 7 6 5 10 10 C 1.52991 * 109.47096 * 100.00155 * 7 6 5 11 11 N 1.46500 * 109.47411 * 184.99873 * 10 7 6 12 12 C 1.46504 * 119.99959 * 270.00282 * 11 10 7 13 13 C 1.36938 * 119.99939 * 89.99636 * 11 10 7 14 14 H 1.08001 * 119.99915 * 342.01788 * 13 11 10 15 15 C 1.38817 * 119.99930 * 161.74446 * 13 11 10 16 16 N 1.31618 * 119.99597 * 346.04174 * 15 13 11 17 17 Si 1.86795 * 119.99854 * 166.04246 * 15 13 11 18 18 H 1.48498 * 109.47014 * 60.00295 * 17 15 13 19 19 H 1.48500 * 109.46950 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47372 * 299.99778 * 17 15 13 21 21 C 1.38266 * 120.11548 * 0.27535 * 6 5 4 22 22 C 1.38148 * 120.05152 * 359.44821 * 21 6 5 23 23 H 1.08997 * 109.47268 * 60.00624 * 1 2 3 24 24 H 1.09002 * 109.47400 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47539 * 300.00315 * 1 2 3 26 26 H 1.08008 * 120.02817 * 359.95146 * 4 3 2 27 27 H 1.08003 * 119.97049 * 180.02562 * 5 4 3 28 28 H 0.96697 * 113.99797 * 299.99517 * 9 7 6 29 29 H 1.09001 * 109.47602 * 65.00032 * 10 7 6 30 30 H 1.09000 * 109.47827 * 305.00031 * 10 7 6 31 31 H 1.08996 * 109.46941 * 264.92191 * 12 11 10 32 32 H 1.08996 * 109.46831 * 24.92505 * 12 11 10 33 33 H 1.08998 * 109.47001 * 144.92713 * 12 11 10 34 34 H 0.97000 * 119.99826 * 179.97438 * 16 15 13 35 35 H 1.07997 * 119.97600 * 179.70422 * 21 6 5 36 36 H 1.08002 * 120.02745 * 180.27300 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 5.0112 4.9043 0.3493 9 8 3.2822 5.9125 0.8620 10 6 3.9949 5.5852 -1.4239 11 7 4.7631 6.8324 -1.4476 12 6 4.0910 8.1114 -1.2048 13 6 6.1093 6.8028 -1.6966 14 1 6.6582 5.8789 -1.5887 15 6 6.7674 7.9589 -2.0932 16 7 6.0763 9.0047 -2.4946 17 14 8.6336 8.0303 -2.0572 18 1 9.1865 6.9791 -2.9486 19 1 9.0871 9.3645 -2.5257 20 1 9.1110 7.8039 -0.6694 21 6 1.9209 3.6048 0.0031 22 6 1.2914 2.3752 -0.0022 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.0208 0.3800 0.0017 27 1 5.1344 2.5751 0.0000 28 1 2.3610 6.0614 0.6083 29 1 2.9715 5.7828 -1.7428 30 1 4.4531 4.8634 -2.1000 31 1 3.8200 8.5660 -2.1576 32 1 3.1909 7.9423 -0.6138 33 1 4.7622 8.7772 -0.6624 34 1 6.5362 9.8127 -2.7714 35 1 1.3341 4.5114 0.0066 36 1 0.2128 2.3202 -0.0030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:30 Heat of formation + Delta-G solvation = -57.762057 kcal Electronic energy + Delta-G solvation = -18240.176815 eV Core-core repulsion = 15303.817482 eV Total energy + Delta-G solvation = -2936.359333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16385 -39.48001 -37.65984 -36.45686 -33.30350 -32.01664 -31.86910 -29.11026 -27.99250 -27.71798 -25.09246 -23.56431 -22.69865 -21.80185 -19.20742 -18.79259 -17.82966 -17.24344 -16.74901 -16.60504 -16.18283 -15.82750 -15.43673 -15.37672 -14.73503 -14.51322 -14.13563 -13.98777 -13.69795 -13.38738 -12.96426 -12.79550 -12.75514 -12.55858 -12.30238 -12.17610 -11.94367 -11.86231 -11.77204 -11.62734 -11.15135 -10.54626 -9.94532 -9.13601 -8.69630 -7.80111 -5.24788 0.39805 0.43030 1.46518 1.49946 1.56027 2.40113 2.52097 2.76950 3.31904 3.59650 3.70405 3.84496 3.97737 4.08716 4.27245 4.37500 4.42522 4.43331 4.51343 4.61057 4.70897 4.76280 4.92360 4.97397 5.02503 5.17544 5.28269 5.38575 5.44947 5.60765 5.72338 5.75475 5.80727 6.32237 6.46898 6.92815 7.16889 7.89847 8.31612 9.22547 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.040148 B = 0.004591 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.259192 B = 6098.013941 C = 6501.526922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.111 3.889 4 C -0.159 4.159 5 C -0.081 4.081 6 C -0.152 4.152 7 C 0.142 3.858 8 H 0.079 0.921 9 O -0.563 6.563 10 C 0.131 3.869 11 N -0.614 5.614 12 C 0.186 3.814 13 C -0.264 4.264 14 H 0.072 0.928 15 C -0.057 4.057 16 N -0.941 5.941 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.294 1.294 20 H -0.281 1.281 21 C -0.076 4.076 22 C -0.203 4.203 23 H 0.063 0.937 24 H 0.119 0.881 25 H 0.064 0.936 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.377 0.623 29 H 0.057 0.943 30 H 0.049 0.951 31 H -0.002 1.002 32 H 0.034 0.966 33 H 0.013 0.987 34 H 0.247 0.753 35 H 0.141 0.859 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.596 -16.069 5.363 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.066 3.934 4 C -0.178 4.178 5 C -0.100 4.100 6 C -0.153 4.153 7 C 0.080 3.920 8 H 0.097 0.903 9 O -0.370 6.370 10 C 0.004 3.996 11 N -0.337 5.337 12 C 0.041 3.959 13 C -0.394 4.394 14 H 0.090 0.910 15 C -0.251 4.251 16 N -0.588 5.588 17 Si 0.797 3.203 18 H -0.199 1.199 19 H -0.220 1.220 20 H -0.207 1.207 21 C -0.094 4.094 22 C -0.222 4.222 23 H 0.082 0.918 24 H 0.137 0.863 25 H 0.083 0.917 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.225 0.775 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.159 0.841 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.898 -16.079 5.591 20.769 hybrid contribution 0.455 0.539 -0.457 0.840 sum -11.443 -15.540 5.135 19.970 Atomic orbital electron populations 1.23340 0.76508 1.05548 1.02260 1.86038 1.23452 1.26674 1.88769 1.19189 0.92525 0.84801 0.96860 1.20562 0.91992 0.98606 1.06615 1.20978 1.00445 0.91121 0.97407 1.20564 0.94979 0.95625 1.04131 1.21332 0.94335 0.84450 0.91857 0.90330 1.86610 1.28603 1.67219 1.54528 1.21509 0.95552 0.87927 0.94582 1.44060 1.05356 1.02143 1.82094 1.20483 0.93187 0.86283 0.95956 1.19558 0.85039 0.96242 1.38567 0.90971 1.25701 1.02254 0.97102 1.00082 1.70270 1.35144 1.04693 1.48725 0.85318 0.80545 0.76570 0.77914 1.19918 1.22043 1.20702 1.20903 0.93379 0.98251 0.96916 1.21419 1.01135 0.91505 1.08105 0.91789 0.86292 0.91717 0.84205 0.84944 0.77482 0.92519 0.93219 0.98413 0.94744 0.96850 0.94378 0.84142 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.10 10.50 -92.52 -0.97 -8.08 16 3 C 0.11 2.65 6.69 22.50 0.15 2.80 16 4 C -0.16 -4.00 9.99 22.36 0.22 -3.77 16 5 C -0.08 -2.24 9.66 22.25 0.21 -2.03 16 6 C -0.15 -4.40 4.98 -19.85 -0.10 -4.50 16 7 C 0.14 5.01 3.45 29.85 0.10 5.11 16 8 H 0.08 3.15 8.00 -2.39 -0.02 3.13 16 9 O -0.56 -19.70 12.11 -148.98 -1.80 -21.50 16 10 C 0.13 5.27 5.28 86.38 0.46 5.73 16 11 N -0.61 -31.48 2.89 -726.95 -2.10 -33.59 16 12 C 0.19 9.51 8.74 127.77 1.12 10.63 16 13 C -0.26 -14.86 9.70 84.03 0.81 -14.04 16 14 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 15 C -0.06 -3.28 5.10 84.86 0.43 -2.84 16 16 N -0.94 -57.13 10.49 21.65 0.23 -56.91 16 17 Si 0.97 46.16 29.58 68.60 2.03 48.19 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 C -0.08 -1.85 9.32 22.25 0.21 -1.64 16 22 C -0.20 -4.37 9.04 22.37 0.20 -4.16 16 23 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 24 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.66 7.67 -2.39 -0.02 0.64 16 26 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 27 H 0.13 3.46 8.03 -2.91 -0.02 3.44 16 28 H 0.38 10.01 7.49 -74.06 -0.55 9.46 16 29 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 30 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 31 H 0.00 -0.13 7.46 -2.39 -0.02 -0.15 16 32 H 0.03 1.48 7.22 -2.39 -0.02 1.46 16 33 H 0.01 0.73 7.03 -2.39 -0.02 0.71 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.14 2.76 6.77 -2.91 -0.02 2.74 16 36 H 0.15 2.33 6.30 -2.91 -0.02 2.32 16 Total: -1.00 -69.56 300.75 2.83 -66.73 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.52 Total: 12.55 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 4.94 Total: -7.39 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -1.88 Total: -90.50 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -2.77 Total: -29.58 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -69.56 2.83 -66.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.964 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds