Wall clock time and date at job start Mon Mar 30 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 110.99861 * 2 1 4 4 C 1.53005 * 109.46935 * 66.04469 * 3 2 1 5 5 O 1.42901 * 109.46772 * 65.00506 * 4 3 2 6 6 C 1.46904 * 111.00235 * 236.04865 * 2 1 3 7 7 C 1.50699 * 109.46960 * 293.95328 * 6 2 1 8 8 C 1.38328 * 119.96230 * 269.97850 * 7 6 2 9 9 C 1.38281 * 120.13505 * 180.02562 * 8 7 6 10 10 C 1.38120 * 120.06679 * 359.68445 * 9 8 7 11 11 C 1.38852 * 119.93490 * 0.58817 * 10 9 8 12 12 O 1.35752 * 120.07221 * 179.70368 * 11 10 9 13 13 C 1.34829 * 116.99954 * 354.17311 * 12 11 10 14 14 H 1.07998 * 119.99999 * 5.03596 * 13 12 11 15 15 C 1.38656 * 119.99670 * 185.03445 * 13 12 11 16 16 N 1.31550 * 120.00275 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99668 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46814 * 90.00164 * 17 15 13 19 19 H 1.48501 * 109.47378 * 210.00272 * 17 15 13 20 20 H 1.48503 * 109.47143 * 330.00397 * 17 15 13 21 21 C 1.38073 * 119.96534 * 89.99651 * 7 6 2 22 22 H 1.08999 * 109.46802 * 183.95405 * 1 2 3 23 23 H 1.08995 * 109.47439 * 303.95120 * 1 2 3 24 24 H 1.08997 * 109.47191 * 63.95239 * 1 2 3 25 25 H 1.09001 * 109.47166 * 186.04157 * 3 2 1 26 26 H 1.08994 * 109.47326 * 306.04551 * 3 2 1 27 27 H 1.09003 * 109.46730 * 185.00071 * 4 3 2 28 28 H 1.08998 * 109.47204 * 305.00054 * 4 3 2 29 29 H 0.96702 * 113.99862 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.46748 * 173.95235 * 6 2 1 31 31 H 1.08992 * 109.46853 * 53.95347 * 6 2 1 32 32 H 1.08001 * 119.93314 * 0.02562 * 8 7 6 33 33 H 1.07993 * 119.96315 * 179.97438 * 9 8 7 34 34 H 1.08001 * 120.03256 * 180.31909 * 10 9 8 35 35 H 0.96999 * 119.99936 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.03547 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 8 2.2956 1.3976 2.3979 6 6 1.9955 -0.7659 -1.1376 7 6 1.6370 -2.2204 -0.9729 8 6 2.4953 -3.0716 -0.3005 9 6 2.1701 -4.4069 -0.1477 10 6 0.9836 -4.8933 -0.6609 11 6 0.1226 -4.0426 -1.3413 12 8 -1.0415 -4.5190 -1.8520 13 6 -1.2467 -5.8491 -1.7706 14 1 -0.5406 -6.4731 -1.2429 15 6 -2.3642 -6.4158 -2.3643 16 7 -3.2240 -5.6558 -3.0075 17 14 -2.6481 -8.2587 -2.2521 18 1 -3.4461 -8.5635 -1.0373 19 1 -3.3840 -8.7205 -3.4565 20 1 -1.3400 -8.9572 -2.1733 21 6 0.4524 -2.7019 -1.4937 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3634 0.5739 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 1.9437 3.1012 1.2831 28 1 0.5530 2.0058 1.4691 29 1 2.1100 1.7800 3.2664 30 1 3.0798 -0.6610 -1.1756 31 1 1.5611 -0.3872 -2.0627 32 1 3.4212 -2.6925 0.1061 33 1 2.8425 -5.0691 0.3774 34 1 0.7278 -5.9352 -0.5368 35 1 -4.0056 -6.0523 -3.4232 36 1 -0.2170 -2.0370 -2.0192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077013879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:31 Heat of formation + Delta-G solvation = -43.562765 kcal Electronic energy + Delta-G solvation = -18047.093603 eV Core-core repulsion = 15111.349997 eV Total energy + Delta-G solvation = -2935.743605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.18742 -38.03025 -36.64961 -35.50662 -32.25576 -31.20815 -29.14939 -28.74049 -26.83899 -25.33525 -23.85957 -21.52895 -21.06680 -20.31585 -17.60760 -17.53167 -16.85863 -16.10740 -15.26033 -14.89881 -14.67351 -14.24722 -14.21893 -13.93046 -13.43265 -13.27260 -13.01560 -12.45647 -12.31067 -12.11776 -11.68999 -11.49546 -11.35909 -11.24937 -11.05323 -10.71556 -10.58595 -10.50451 -10.35193 -10.01522 -9.28574 -8.79703 -8.22983 -7.92166 -7.15962 -6.40515 -3.99574 2.16573 2.46547 3.15362 3.16281 3.21016 4.00026 4.04624 4.22548 4.72035 4.99848 5.06142 5.12712 5.18842 5.21358 5.37656 5.52415 5.55403 5.69437 5.72297 5.80361 5.87240 5.92473 6.04944 6.26983 6.30089 6.39768 6.72273 6.97017 7.12206 7.17333 7.20787 7.40404 7.46732 7.49052 7.61933 7.89529 8.04834 9.05615 9.76773 10.77891 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.037377 B = 0.004439 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.951809 B = 6305.841056 C = 6652.666780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.525 5.525 3 C 0.052 3.948 4 C 0.080 3.920 5 O -0.557 6.557 6 C 0.101 3.899 7 C -0.041 4.041 8 C -0.186 4.186 9 C -0.078 4.078 10 C -0.231 4.231 11 C 0.152 3.848 12 O -0.182 6.182 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.866 5.866 17 Si 0.940 3.060 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.184 4.184 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.022 0.978 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.371 0.629 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.269 0.731 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.469 11.670 6.094 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.249 5.249 3 C -0.076 4.076 4 C 0.002 3.998 5 O -0.361 6.361 6 C -0.026 4.026 7 C -0.041 4.041 8 C -0.206 4.206 9 C -0.096 4.096 10 C -0.251 4.251 11 C 0.098 3.902 12 O -0.085 6.085 13 C -0.467 4.467 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.501 5.501 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.204 4.204 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.041 0.959 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.440 11.160 5.774 15.137 hybrid contribution -0.701 -0.215 -0.212 0.763 sum 7.739 10.946 5.563 14.514 Atomic orbital electron populations 1.22543 0.87243 1.03732 0.99540 1.61932 1.08053 1.11865 1.43039 1.22156 1.01072 0.89446 0.94893 1.22216 0.96002 0.93976 0.87626 1.86641 1.72389 1.59867 1.17167 1.20995 0.99666 0.90892 0.91062 1.19106 0.94026 0.93521 0.97483 1.20425 1.00838 0.93542 1.05771 1.20740 0.95791 0.95064 0.98000 1.21182 0.96818 1.00897 1.06166 1.19303 0.86466 0.92582 0.91801 1.83973 1.30138 1.25260 1.69175 1.21312 1.09439 0.80091 1.35875 0.89158 1.25260 0.95163 1.00278 0.95808 1.70036 1.11702 1.35658 1.32711 0.85731 0.78905 0.80753 0.78149 1.19927 1.20309 1.19224 1.20019 0.98388 0.93723 1.08286 0.89886 0.91882 0.95900 0.90180 0.93719 0.93810 0.93537 0.78325 0.90406 0.94402 0.87601 0.87517 0.85705 0.92138 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.95 60.06 0.54 0.79 16 2 N -0.52 -7.73 4.70 -244.37 -1.15 -8.88 16 3 C 0.05 0.61 5.34 -3.82 -0.02 0.59 16 4 C 0.08 0.80 7.11 37.16 0.26 1.07 16 5 O -0.56 -6.45 13.61 -35.23 -0.48 -6.93 16 6 C 0.10 1.54 5.12 -4.97 -0.03 1.52 16 7 C -0.04 -0.76 4.88 -104.65 -0.51 -1.27 16 8 C -0.19 -3.46 9.70 -39.53 -0.38 -3.84 16 9 C -0.08 -1.51 10.04 -39.61 -0.40 -1.90 16 10 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 11 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 12 O -0.18 -5.27 9.76 0.05 0.00 -5.27 16 13 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 14 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.87 -25.68 13.67 55.48 0.76 -24.92 16 17 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.18 -3.99 7.91 -39.39 -0.31 -4.30 16 22 H 0.08 1.45 6.17 -51.93 -0.32 1.13 16 23 H 0.06 0.82 6.21 -51.93 -0.32 0.49 16 24 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 26 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.45 6.26 -51.93 -0.33 0.13 16 29 H 0.37 2.51 9.12 45.56 0.42 2.93 16 30 H 0.08 1.08 7.87 -51.93 -0.41 0.67 16 31 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.11 2.37 8.03 -52.49 -0.42 1.94 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -32.70 301.77 -6.65 -39.34 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.03 Total: 5.58 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.27 Total: -19.27 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -0.39 Total: -33.80 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.48 Total: -12.19 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.70 -6.65 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077013879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.219 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds