Wall clock time and date at job start Mon Mar 30 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 110.99861 * 2 1 4 4 C 1.53005 * 109.46935 * 66.04469 * 3 2 1 5 5 O 1.42901 * 109.46772 * 65.00506 * 4 3 2 6 6 C 1.46904 * 111.00235 * 236.04865 * 2 1 3 7 7 C 1.50699 * 109.46960 * 293.95328 * 6 2 1 8 8 C 1.38328 * 119.96230 * 269.97850 * 7 6 2 9 9 C 1.38281 * 120.13505 * 180.02562 * 8 7 6 10 10 C 1.38120 * 120.06679 * 359.68445 * 9 8 7 11 11 C 1.38852 * 119.93490 * 0.58817 * 10 9 8 12 12 O 1.35752 * 120.07221 * 179.70368 * 11 10 9 13 13 C 1.34829 * 116.99954 * 354.17311 * 12 11 10 14 14 H 1.07998 * 119.99999 * 5.03596 * 13 12 11 15 15 C 1.38656 * 119.99670 * 185.03445 * 13 12 11 16 16 N 1.31550 * 120.00275 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99668 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46814 * 90.00164 * 17 15 13 19 19 H 1.48501 * 109.47378 * 210.00272 * 17 15 13 20 20 H 1.48503 * 109.47143 * 330.00397 * 17 15 13 21 21 C 1.38073 * 119.96534 * 89.99651 * 7 6 2 22 22 H 1.08999 * 109.46802 * 183.95405 * 1 2 3 23 23 H 1.08995 * 109.47439 * 303.95120 * 1 2 3 24 24 H 1.08997 * 109.47191 * 63.95239 * 1 2 3 25 25 H 1.09001 * 109.47166 * 186.04157 * 3 2 1 26 26 H 1.08994 * 109.47326 * 306.04551 * 3 2 1 27 27 H 1.09003 * 109.46730 * 185.00071 * 4 3 2 28 28 H 1.08998 * 109.47204 * 305.00054 * 4 3 2 29 29 H 0.96702 * 113.99862 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.46748 * 173.95235 * 6 2 1 31 31 H 1.08992 * 109.46853 * 53.95347 * 6 2 1 32 32 H 1.08001 * 119.93314 * 0.02562 * 8 7 6 33 33 H 1.07993 * 119.96315 * 179.97438 * 9 8 7 34 34 H 1.08001 * 120.03256 * 180.31909 * 10 9 8 35 35 H 0.96999 * 119.99936 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.03547 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 8 2.2956 1.3976 2.3979 6 6 1.9955 -0.7659 -1.1376 7 6 1.6370 -2.2204 -0.9729 8 6 2.4953 -3.0716 -0.3005 9 6 2.1701 -4.4069 -0.1477 10 6 0.9836 -4.8933 -0.6609 11 6 0.1226 -4.0426 -1.3413 12 8 -1.0415 -4.5190 -1.8520 13 6 -1.2467 -5.8491 -1.7706 14 1 -0.5406 -6.4731 -1.2429 15 6 -2.3642 -6.4158 -2.3643 16 7 -3.2240 -5.6558 -3.0075 17 14 -2.6481 -8.2587 -2.2521 18 1 -3.4461 -8.5635 -1.0373 19 1 -3.3840 -8.7205 -3.4565 20 1 -1.3400 -8.9572 -2.1733 21 6 0.4524 -2.7019 -1.4937 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3634 0.5739 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 1.9437 3.1012 1.2831 28 1 0.5530 2.0058 1.4691 29 1 2.1100 1.7800 3.2664 30 1 3.0798 -0.6610 -1.1756 31 1 1.5611 -0.3872 -2.0627 32 1 3.4212 -2.6925 0.1061 33 1 2.8425 -5.0691 0.3774 34 1 0.7278 -5.9352 -0.5368 35 1 -4.0056 -6.0523 -3.4232 36 1 -0.2170 -2.0370 -2.0192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077013879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:30 Heat of formation + Delta-G solvation = -68.759841 kcal Electronic energy + Delta-G solvation = -18048.186230 eV Core-core repulsion = 15111.349997 eV Total energy + Delta-G solvation = -2936.836233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87154 -39.31220 -38.04773 -36.66938 -34.29571 -32.61843 -30.84262 -29.81671 -28.15719 -27.32762 -25.09673 -23.19523 -22.35653 -21.68249 -19.48431 -18.71616 -18.32851 -17.11105 -16.77243 -16.52842 -16.17812 -15.75822 -15.69199 -15.48162 -14.73971 -14.71738 -14.27913 -13.96853 -13.77409 -13.56091 -13.14515 -12.97937 -12.68233 -12.63233 -12.46689 -12.25567 -12.19451 -12.06818 -11.71380 -11.16501 -10.79904 -10.77035 -9.69495 -9.19998 -8.96803 -8.46496 -6.14882 0.52862 0.77082 1.34926 1.44400 1.52579 2.18182 2.74607 3.02669 3.28593 3.47409 3.55355 3.91780 4.09133 4.18606 4.27589 4.31867 4.40404 4.46785 4.54463 4.62068 4.66917 4.73002 4.75044 4.80462 4.93053 5.06154 5.11324 5.14281 5.32304 5.66311 5.73994 5.80811 6.03233 6.04911 6.15287 6.26844 6.98398 7.04557 7.79687 8.76951 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.037377 B = 0.004439 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.951809 B = 6305.841056 C = 6652.666780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.048 3.952 4 C 0.080 3.920 5 O -0.584 6.584 6 C 0.103 3.897 7 C -0.034 4.034 8 C -0.171 4.171 9 C -0.073 4.073 10 C -0.244 4.244 11 C 0.112 3.888 12 O -0.234 6.234 13 C -0.414 4.414 14 H 0.100 0.900 15 C -0.023 4.023 16 N -0.922 5.922 17 Si 1.019 2.981 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.253 1.253 21 C -0.191 4.191 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.028 0.972 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.390 0.610 30 H 0.102 0.898 31 H 0.042 0.958 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.272 0.728 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.870 12.376 7.378 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.079 4.079 4 C 0.002 3.998 5 O -0.391 6.391 6 C -0.024 4.024 7 C -0.035 4.035 8 C -0.190 4.190 9 C -0.091 4.091 10 C -0.264 4.264 11 C 0.062 3.938 12 O -0.141 6.141 13 C -0.490 4.490 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.560 5.560 17 Si 0.838 3.162 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.177 1.177 21 C -0.210 4.210 22 H 0.066 0.934 23 H 0.098 0.902 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.238 0.762 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.889 11.908 7.096 17.627 hybrid contribution -1.213 -0.192 -0.492 1.323 sum 9.676 11.716 6.604 16.568 Atomic orbital electron populations 1.22446 0.87806 1.01784 1.00611 1.61916 1.07680 1.14049 1.42526 1.22312 1.01358 0.87741 0.96509 1.22277 0.95955 0.95070 0.86529 1.86571 1.72847 1.60998 1.18675 1.21020 1.01118 0.88567 0.91720 1.19537 0.92428 0.95818 0.95675 1.20927 1.01455 0.93021 1.03613 1.21141 0.94792 0.96175 0.97016 1.21295 0.97930 1.00473 1.06676 1.19861 0.86534 0.94204 0.93226 1.83935 1.32696 1.25703 1.71734 1.21821 1.10215 0.80537 1.36467 0.88237 1.26576 0.94447 1.05911 0.95048 1.70183 1.12784 1.38257 1.34806 0.84592 0.79396 0.73666 0.78580 1.18797 1.19517 1.17693 1.20182 0.99594 0.92583 1.08682 0.93404 0.90229 0.95374 0.89601 0.92176 0.90974 0.93559 0.76172 0.87998 0.94022 0.84097 0.83781 0.86418 0.91880 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.95 127.69 1.14 1.76 16 2 N -0.54 -14.54 4.70 -927.06 -4.36 -18.90 16 3 C 0.05 0.95 5.34 86.30 0.46 1.42 16 4 C 0.08 1.34 7.11 71.98 0.51 1.85 16 5 O -0.58 -11.83 13.61 -148.98 -2.03 -13.86 16 6 C 0.10 2.89 5.12 85.56 0.44 3.33 16 7 C -0.03 -1.22 4.88 -19.88 -0.10 -1.32 16 8 C -0.17 -5.82 9.70 22.30 0.22 -5.60 16 9 C -0.07 -2.67 10.04 22.25 0.22 -2.45 16 10 C -0.24 -11.13 9.17 22.39 0.21 -10.92 16 11 C 0.11 5.78 6.65 22.58 0.15 5.93 16 12 O -0.23 -14.46 9.76 -22.74 -0.22 -14.68 16 13 C -0.41 -24.73 9.49 67.92 0.64 -24.08 16 14 H 0.10 5.48 5.21 -2.91 -0.02 5.46 16 15 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 16 N -0.92 -57.44 13.67 21.61 0.30 -57.14 16 17 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 21 C -0.19 -8.48 7.91 22.39 0.18 -8.30 16 22 H 0.05 1.69 6.17 -2.39 -0.01 1.68 16 23 H 0.08 1.96 6.21 -2.39 -0.01 1.94 16 24 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 1.62 7.93 -2.39 -0.02 1.60 16 26 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.77 6.26 -2.39 -0.01 0.76 16 29 H 0.39 4.26 9.12 -74.06 -0.68 3.58 16 30 H 0.10 2.40 7.87 -2.39 -0.02 2.38 16 31 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 32 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.10 4.66 8.03 -2.91 -0.02 4.64 16 Total: -1.00 -74.75 301.77 0.67 -74.09 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.41 Total: 24.11 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 4.54 Total: -39.23 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -4.06 Total: -76.04 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -2.25 Total: -28.54 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -74.75 0.67 -74.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077013879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.327 kcal (2) G-P(sol) polarization free energy of solvation -74.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds