Wall clock time and date at job start Mon Mar 30 2020 04:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50714 * 2 1 4 4 C 1.53365 * 109.49988 * 239.92300 * 2 1 3 5 5 C 1.51506 * 108.09836 * 187.80298 * 4 2 1 6 6 O 1.20758 * 121.21647 * 228.44269 * 5 4 2 7 7 C 1.51514 * 117.56894 * 48.41885 * 5 4 2 8 8 C 1.53001 * 109.73679 * 191.88608 * 7 5 4 9 9 C 1.50702 * 109.47077 * 59.34450 * 8 7 5 10 10 H 1.08003 * 120.00267 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99925 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00036 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00321 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47002 * 59.99593 * 13 11 9 15 15 H 1.48499 * 109.47731 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47052 * 300.00329 * 13 11 9 17 17 C 1.52997 * 109.73542 * 71.23401 * 7 5 4 18 18 C 1.52995 * 109.47143 * 59.47837 * 17 7 5 19 19 C 1.47204 * 109.47235 * 185.10122 * 18 17 7 20 20 N 6.55665 * 108.63544 * 187.23132 * 2 1 3 21 21 C 1.53358 * 108.09470 * 311.58281 * 7 5 4 22 22 O 1.42889 * 109.27985 * 52.26093 * 21 7 5 23 23 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46545 * 300.07292 * 1 2 3 25 25 H 1.09003 * 109.47074 * 60.07012 * 1 2 3 26 26 H 1.09006 * 109.73265 * 68.15571 * 4 2 1 27 27 H 1.08995 * 109.77904 * 307.48025 * 4 2 1 28 28 H 1.09000 * 109.47201 * 179.34741 * 8 7 5 29 29 H 1.08998 * 109.47063 * 299.34864 * 8 7 5 30 30 H 0.97008 * 119.99903 * 179.97438 * 12 11 9 31 31 H 1.08993 * 109.47156 * 299.47373 * 17 7 5 32 32 H 1.09009 * 109.47054 * 179.47370 * 17 7 5 33 33 H 1.08996 * 109.47579 * 65.09961 * 18 17 7 34 34 H 1.09002 * 109.47053 * 305.09696 * 18 17 7 35 35 H 1.09007 * 109.50092 * 172.19642 * 21 7 5 36 36 H 1.09003 * 109.50627 * 292.31215 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2510 5 6 3.5440 -0.8774 -1.1248 6 8 4.2820 -0.5783 -2.0327 7 6 4.0864 -1.4186 0.1823 8 6 5.6032 -1.2246 0.2321 9 6 5.9261 0.2425 0.1118 10 1 5.1292 0.9644 0.0104 11 6 7.2389 0.6634 0.1323 12 7 8.2094 -0.2156 0.2563 13 14 7.6393 2.4819 -0.0161 14 1 7.0080 3.2209 1.1068 15 1 9.1114 2.6704 0.0334 16 1 7.1164 3.0003 -1.3057 17 6 3.7517 -2.9066 0.3039 18 6 4.3741 -3.6668 -0.8689 19 6 3.9514 -5.0760 -0.8199 20 7 3.6251 -6.1635 -0.7821 21 6 3.4261 -0.6438 1.3292 22 8 2.0071 -0.6761 1.1650 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5150 0.8894 25 1 -0.3633 0.5128 -0.8906 26 1 1.8049 -0.1381 -2.1388 27 1 1.5767 -1.7075 -1.3243 28 1 5.9872 -1.6047 1.1787 29 1 6.0662 -1.7672 -0.5921 30 1 9.1331 0.0805 0.2703 31 1 2.6698 -3.0380 0.2889 32 1 4.1518 -3.2936 1.2411 33 1 5.4606 -3.6109 -0.8026 34 1 4.0439 -3.2209 -1.8072 35 1 3.6929 -1.1044 2.2805 36 1 3.7707 0.3903 1.3157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082288720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:02 Heat of formation + Delta-G solvation = -74.207515 kcal Electronic energy + Delta-G solvation = -19201.436141 eV Core-core repulsion = 16264.363679 eV Total energy + Delta-G solvation = -2937.072462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26678 -37.38429 -36.73807 -35.08112 -32.72157 -32.47920 -30.36202 -28.41654 -26.41227 -24.40763 -23.02156 -21.98088 -21.28398 -17.91302 -17.45515 -16.47504 -16.21330 -15.43483 -15.17252 -14.89873 -14.74546 -14.33630 -13.96775 -13.48630 -13.17867 -12.93265 -12.50640 -12.45357 -12.22416 -12.05790 -11.88921 -11.65910 -11.52190 -11.41562 -11.28448 -10.86755 -10.82385 -10.65045 -10.57011 -10.11114 -9.75868 -9.25624 -8.99432 -8.60876 -8.36131 -6.04245 -4.04606 2.59451 2.92909 2.96198 3.31170 3.36321 3.39107 3.96941 4.18116 4.43188 4.46884 4.89572 5.02502 5.18840 5.20698 5.33006 5.36603 5.44711 5.52796 5.66101 5.70023 5.80716 5.82117 5.91553 6.02523 6.05850 6.17405 6.21517 6.38887 6.48111 6.65473 7.46789 7.51684 7.59672 7.72788 7.88442 8.18271 8.29557 8.94687 9.58273 11.07071 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.008873 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.138542 B = 3154.818677 C = 4252.636788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.061 0.939 4 C -0.204 4.204 5 C 0.363 3.637 6 O -0.417 6.417 7 C -0.129 4.129 8 C 0.038 3.962 9 C -0.510 4.510 10 H 0.050 0.950 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.886 3.114 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.092 4.092 18 C -0.037 4.037 19 C 0.219 3.781 20 N -0.456 5.456 21 C 0.079 3.921 22 O -0.384 6.384 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 -0.414 0.129 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 H 0.079 0.921 4 C -0.242 4.242 5 C 0.235 3.765 6 O -0.287 6.287 7 C -0.130 4.130 8 C 0.001 3.999 9 C -0.548 4.548 10 H 0.068 0.932 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.714 3.286 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.131 4.131 18 C -0.077 4.077 19 C -0.098 4.098 20 N -0.134 5.134 21 C 0.003 3.997 22 O -0.303 6.303 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.144 -1.987 -0.183 12.307 hybrid contribution 0.667 1.603 -0.338 1.769 sum -11.477 -0.384 -0.521 11.495 Atomic orbital electron populations 1.21773 0.93095 1.02822 1.02303 1.21981 0.94853 0.95244 0.84356 0.92061 1.23138 0.97092 1.03520 1.00463 1.24564 0.89476 0.74067 0.88438 1.90418 1.61653 1.36000 1.40587 1.22120 1.02288 0.93935 0.94698 1.19106 0.84660 0.97833 0.98290 1.20952 0.91808 0.91918 1.50092 0.93213 1.24886 0.96497 0.97252 0.95241 1.69919 0.99520 1.33448 1.50360 0.86744 0.77254 0.85919 0.78646 1.20324 1.21288 1.20288 1.21442 1.00799 0.93246 0.97574 1.19565 1.04313 0.82076 1.01733 1.29410 0.92682 0.95132 0.92583 1.81160 1.10053 1.12819 1.09349 1.22802 0.78071 1.01280 0.97582 1.87824 1.22994 1.76487 1.43014 0.91807 0.91750 0.91307 0.89282 0.88325 0.95399 0.94870 0.92918 0.90980 0.90023 0.85933 0.88068 0.88184 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.57 37.16 0.36 -1.04 16 2 C 0.09 1.21 3.26 -26.54 -0.09 1.12 16 3 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 4 C -0.20 -2.70 5.47 -27.30 -0.15 -2.85 16 5 C 0.36 6.31 3.98 -28.24 -0.11 6.20 16 6 O -0.42 -8.91 16.13 6.00 0.10 -8.81 16 7 C -0.13 -2.20 0.35 -155.08 -0.05 -2.26 16 8 C 0.04 0.84 3.41 -27.88 -0.10 0.75 16 9 C -0.51 -13.03 7.01 -34.44 -0.24 -13.27 16 10 H 0.05 1.26 6.38 -52.48 -0.33 0.93 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 13 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.09 -1.28 4.11 -26.74 -0.11 -1.39 16 18 C -0.04 -0.50 5.08 -29.52 -0.15 -0.65 16 19 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 20 N -0.46 -7.58 18.54 42.15 0.78 -6.80 16 21 C 0.08 1.27 5.39 37.34 0.20 1.47 16 22 O -0.38 -5.59 9.95 -35.23 -0.35 -5.94 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.10 1.12 7.99 -51.93 -0.41 0.71 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.79 6.51 -51.93 -0.34 0.46 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.07 0.91 7.58 -51.93 -0.39 0.52 16 32 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.12 1.76 6.76 -51.93 -0.35 1.41 16 34 H 0.10 1.35 7.02 -51.93 -0.36 0.99 16 35 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.07 1.33 6.38 -51.93 -0.33 1.00 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -30.25 299.32 -5.15 -35.40 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.04 Total: -2.33 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.86 Total: -7.47 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 1.52 Total: -31.38 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.25 Total: -14.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.25 -5.15 -35.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082288720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.809 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds