Wall clock time and date at job start Mon Mar 30 2020 04:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49985 * 2 1 4 4 C 1.53363 * 109.50399 * 120.07597 * 2 1 3 5 5 C 1.51508 * 108.09540 * 172.23695 * 4 2 1 6 6 O 1.20760 * 121.21365 * 131.56278 * 5 4 2 7 7 C 1.51509 * 117.56944 * 311.58071 * 5 4 2 8 8 C 1.52999 * 109.74091 * 288.72042 * 7 5 4 9 9 C 1.50700 * 109.47015 * 301.13517 * 8 7 5 10 10 H 1.07996 * 120.00219 * 4.93713 * 9 8 7 11 11 C 1.37877 * 119.99511 * 184.94090 * 9 8 7 12 12 N 1.31517 * 120.00463 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99534 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47089 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46814 * 119.99867 * 13 11 9 16 16 H 1.48502 * 109.46506 * 239.99592 * 13 11 9 17 17 C 1.53008 * 109.73503 * 168.06715 * 7 5 4 18 18 C 1.53000 * 109.47330 * 300.65974 * 17 7 5 19 19 C 1.47195 * 109.46979 * 180.02562 * 18 17 7 20 20 N 7.01356 * 174.81407 * 342.09247 * 2 1 3 21 21 C 1.53370 * 108.13390 * 48.39937 * 7 5 4 22 22 O 1.42887 * 109.53647 * 239.90084 * 2 1 3 23 23 H 1.09005 * 109.47454 * 299.92607 * 1 2 3 24 24 H 1.09005 * 109.47452 * 59.92299 * 1 2 3 25 25 H 1.08995 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.73540 * 52.58506 * 4 2 1 27 27 H 1.09002 * 109.77723 * 291.91075 * 4 2 1 28 28 H 1.09003 * 109.46596 * 61.13725 * 8 7 5 29 29 H 1.09005 * 109.47054 * 181.13176 * 8 7 5 30 30 H 0.96994 * 119.99874 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.46987 * 60.65970 * 17 7 5 32 32 H 1.08995 * 109.46941 * 180.65603 * 17 7 5 33 33 H 1.09003 * 109.47081 * 299.99938 * 18 17 7 34 34 H 1.08997 * 109.47189 * 59.99430 * 18 17 7 35 35 H 1.08992 * 109.50236 * 67.70559 * 21 7 5 36 36 H 1.09003 * 109.49974 * 187.82008 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7245 1.2510 5 6 3.5442 -0.8764 1.1251 6 8 4.2818 -0.5771 2.0332 7 6 4.0872 -1.4170 -0.1819 8 6 3.7545 -2.9054 -0.3036 9 6 4.3560 -3.6512 0.8597 10 1 4.8504 -3.1084 1.6517 11 6 4.2750 -5.0266 0.9127 12 7 3.6726 -5.6876 -0.0515 13 14 5.0199 -5.9510 2.3550 14 1 5.6350 -4.9834 3.2986 15 1 3.9571 -6.7173 3.0538 16 1 6.0603 -6.8873 1.8586 17 6 5.6039 -1.2208 -0.2319 18 6 5.9298 0.2690 -0.1098 19 6 7.3888 0.4577 -0.1584 20 7 8.5148 0.6032 -0.1949 21 6 3.4269 -0.6431 -1.3297 22 8 2.0078 -0.6753 -1.1650 23 1 -0.3634 0.5127 0.8907 24 1 -0.3634 0.5150 -0.8893 25 1 -0.3634 -1.0276 -0.0005 26 1 1.5773 -1.7078 1.3229 27 1 1.8043 -0.1392 2.1393 28 1 2.6725 -3.0373 -0.2995 29 1 4.1645 -3.2944 -1.2357 30 1 3.6154 -6.6551 -0.0140 31 1 6.0676 -1.7630 0.5923 32 1 5.9883 -1.6005 -1.1785 33 1 5.4660 0.8111 -0.9339 34 1 5.5452 0.6487 0.8368 35 1 3.7708 0.3910 -1.3165 36 1 3.6944 -1.1041 -2.2806 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082288721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:05 Heat of formation + Delta-G solvation = -75.527583 kcal Electronic energy + Delta-G solvation = -19199.467744 eV Core-core repulsion = 16262.338040 eV Total energy + Delta-G solvation = -2937.129704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35802 -37.50715 -36.64664 -35.06190 -32.84864 -32.28518 -30.61046 -28.07104 -26.71951 -24.45608 -22.85533 -21.96616 -21.43234 -18.01322 -17.31561 -16.80706 -16.22778 -15.58776 -15.07952 -14.69855 -14.60409 -14.52175 -13.96230 -13.61341 -13.23989 -12.62751 -12.55455 -12.35910 -12.21622 -12.10988 -11.97660 -11.75379 -11.60448 -11.37641 -11.19695 -10.95987 -10.66786 -10.56001 -10.42174 -10.23658 -9.71842 -9.41258 -8.94491 -8.71220 -8.42214 -6.09885 -4.12861 2.54855 2.98273 3.01153 3.27050 3.35789 3.41699 3.91382 4.23250 4.39202 4.50008 4.92768 5.02280 5.19114 5.21375 5.25520 5.33064 5.46198 5.48049 5.59933 5.63471 5.75121 5.79114 5.90906 6.02979 6.13418 6.21358 6.29619 6.49771 6.59693 6.80438 7.42721 7.51535 7.56321 7.78495 7.87974 8.06765 8.23931 8.93882 9.53028 11.00377 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.009957 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.103406 B = 2811.293523 C = 4099.216914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.095 3.905 3 H 0.057 0.943 4 C -0.201 4.201 5 C 0.388 3.612 6 O -0.462 6.462 7 C -0.129 4.129 8 C 0.047 3.953 9 C -0.529 4.529 10 H 0.061 0.939 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.885 3.115 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.088 4.088 18 C -0.045 4.045 19 C 0.221 3.779 20 N -0.456 5.456 21 C 0.071 3.929 22 O -0.368 6.368 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.047 0.953 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 11.568 -1.961 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.036 3.964 3 H 0.075 0.925 4 C -0.239 4.239 5 C 0.264 3.736 6 O -0.336 6.336 7 C -0.130 4.130 8 C 0.010 3.990 9 C -0.567 4.567 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.528 5.528 13 Si 0.713 3.287 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.127 4.127 18 C -0.085 4.085 19 C -0.097 4.097 20 N -0.133 5.133 21 C -0.006 4.006 22 O -0.287 6.287 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.066 0.934 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.112 11.689 -1.718 12.509 hybrid contribution 0.085 -0.774 1.017 1.281 sum -4.027 10.915 -0.701 11.655 Atomic orbital electron populations 1.21770 0.92802 1.03443 1.02115 1.22025 0.95419 0.94356 0.84555 0.92541 1.23063 0.96431 1.04628 0.99736 1.24553 0.90355 0.70653 0.88043 1.90293 1.62251 1.39762 1.41271 1.22166 0.94926 1.02329 0.93627 1.19067 0.97941 0.83754 0.98247 1.21302 1.36885 0.91683 1.06795 0.92103 1.24940 0.95145 0.97796 0.95933 1.69957 1.42854 1.07719 1.32227 0.86626 0.79112 0.80029 0.82921 1.19607 1.20972 1.20943 1.21354 0.95012 0.91644 1.04710 1.19773 0.82292 1.00954 1.05471 1.29274 0.95339 0.92557 0.92485 1.81156 1.12958 1.09476 1.09712 1.22904 0.80379 0.98242 0.99069 1.87924 1.21446 1.76558 1.42759 0.91249 0.91816 0.91246 0.86818 0.89397 0.95065 0.94741 0.92918 0.88846 0.90612 0.88075 0.86873 0.93448 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.57 37.16 0.36 -1.13 16 2 C 0.09 1.19 3.26 -26.54 -0.09 1.10 16 3 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 4 C -0.20 -2.95 5.48 -27.30 -0.15 -3.10 16 5 C 0.39 6.76 4.47 -28.24 -0.13 6.63 16 6 O -0.46 -8.97 14.95 6.00 0.09 -8.88 16 7 C -0.13 -2.22 0.34 -155.07 -0.05 -2.27 16 8 C 0.05 1.05 3.92 -27.88 -0.11 0.94 16 9 C -0.53 -13.65 7.77 -34.44 -0.27 -13.91 16 10 H 0.06 1.61 6.40 -52.49 -0.34 1.27 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.09 -1.44 3.68 -26.73 -0.10 -1.54 16 18 C -0.05 -0.59 5.05 -29.52 -0.15 -0.74 16 19 C 0.22 3.37 15.43 -20.76 -0.32 3.05 16 20 N -0.46 -8.04 18.54 42.15 0.78 -7.26 16 21 C 0.07 0.98 5.37 37.35 0.20 1.18 16 22 O -0.37 -5.47 9.94 -35.23 -0.35 -5.83 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.11 1.84 8.01 -51.93 -0.42 1.43 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.75 7.61 -51.93 -0.40 0.36 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.09 1.82 6.76 -51.93 -0.35 1.46 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.10 0.99 6.27 -51.93 -0.33 0.66 16 34 H 0.11 1.53 5.96 -51.93 -0.31 1.22 16 35 H 0.05 0.52 6.05 -51.93 -0.31 0.20 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 297.86 15.07 4.49 4.49 Total: -1.00 -30.51 297.86 -5.14 -35.65 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.96 Total: -1.87 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.90 Total: -8.15 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 1.52 Total: -31.62 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.26 Total: -14.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.51 -5.14 -35.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082288721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.880 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds