Wall clock time and date at job start Mon Mar 30 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49985 * 2 1 4 4 C 1.53363 * 109.50399 * 120.07597 * 2 1 3 5 5 C 1.51508 * 108.09540 * 172.23695 * 4 2 1 6 6 O 1.20760 * 121.21365 * 131.56278 * 5 4 2 7 7 C 1.51509 * 117.56944 * 311.58071 * 5 4 2 8 8 C 1.52999 * 109.74091 * 288.72042 * 7 5 4 9 9 C 1.50700 * 109.47015 * 301.13517 * 8 7 5 10 10 H 1.07996 * 120.00219 * 4.93713 * 9 8 7 11 11 C 1.37877 * 119.99511 * 184.94090 * 9 8 7 12 12 N 1.31517 * 120.00463 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99534 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47089 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46814 * 119.99867 * 13 11 9 16 16 H 1.48502 * 109.46506 * 239.99592 * 13 11 9 17 17 C 1.53008 * 109.73503 * 168.06715 * 7 5 4 18 18 C 1.53000 * 109.47330 * 300.65974 * 17 7 5 19 19 C 1.47195 * 109.46979 * 180.02562 * 18 17 7 20 20 N 7.01356 * 174.81407 * 342.09247 * 2 1 3 21 21 C 1.53370 * 108.13390 * 48.39937 * 7 5 4 22 22 O 1.42887 * 109.53647 * 239.90084 * 2 1 3 23 23 H 1.09005 * 109.47454 * 299.92607 * 1 2 3 24 24 H 1.09005 * 109.47452 * 59.92299 * 1 2 3 25 25 H 1.08995 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.73540 * 52.58506 * 4 2 1 27 27 H 1.09002 * 109.77723 * 291.91075 * 4 2 1 28 28 H 1.09003 * 109.46596 * 61.13725 * 8 7 5 29 29 H 1.09005 * 109.47054 * 181.13176 * 8 7 5 30 30 H 0.96994 * 119.99874 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.46987 * 60.65970 * 17 7 5 32 32 H 1.08995 * 109.46941 * 180.65603 * 17 7 5 33 33 H 1.09003 * 109.47081 * 299.99938 * 18 17 7 34 34 H 1.08997 * 109.47189 * 59.99430 * 18 17 7 35 35 H 1.08992 * 109.50236 * 67.70559 * 21 7 5 36 36 H 1.09003 * 109.49974 * 187.82008 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7245 1.2510 5 6 3.5442 -0.8764 1.1251 6 8 4.2818 -0.5771 2.0332 7 6 4.0872 -1.4170 -0.1819 8 6 3.7545 -2.9054 -0.3036 9 6 4.3560 -3.6512 0.8597 10 1 4.8504 -3.1084 1.6517 11 6 4.2750 -5.0266 0.9127 12 7 3.6726 -5.6876 -0.0515 13 14 5.0199 -5.9510 2.3550 14 1 5.6350 -4.9834 3.2986 15 1 3.9571 -6.7173 3.0538 16 1 6.0603 -6.8873 1.8586 17 6 5.6039 -1.2208 -0.2319 18 6 5.9298 0.2690 -0.1098 19 6 7.3888 0.4577 -0.1584 20 7 8.5148 0.6032 -0.1949 21 6 3.4269 -0.6431 -1.3297 22 8 2.0078 -0.6753 -1.1650 23 1 -0.3634 0.5127 0.8907 24 1 -0.3634 0.5150 -0.8893 25 1 -0.3634 -1.0276 -0.0005 26 1 1.5773 -1.7078 1.3229 27 1 1.8043 -0.1392 2.1393 28 1 2.6725 -3.0373 -0.2995 29 1 4.1645 -3.2944 -1.2357 30 1 3.6154 -6.6551 -0.0140 31 1 6.0676 -1.7630 0.5923 32 1 5.9883 -1.6005 -1.1785 33 1 5.4660 0.8111 -0.9339 34 1 5.5452 0.6487 0.8368 35 1 3.7708 0.3910 -1.3165 36 1 3.6944 -1.1041 -2.2806 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082288721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:04 Heat of formation + Delta-G solvation = -94.255713 kcal Electronic energy + Delta-G solvation = -19200.279856 eV Core-core repulsion = 16262.338040 eV Total energy + Delta-G solvation = -2937.941817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65641 -38.73234 -37.92916 -36.48218 -34.69046 -33.39865 -32.03796 -29.42952 -28.10905 -25.74250 -24.59539 -23.31080 -22.48945 -19.39015 -18.54030 -18.47605 -17.62368 -16.85408 -16.56115 -16.21380 -15.93752 -15.77419 -15.28266 -14.90952 -14.52963 -14.18647 -13.93363 -13.74664 -13.49069 -13.41615 -13.14054 -13.03958 -12.89928 -12.84593 -12.67187 -12.48982 -12.26271 -12.14920 -11.70629 -11.61338 -11.23628 -11.09661 -10.56347 -10.27483 -10.05951 -8.19312 -6.26035 1.15430 1.33664 1.37476 1.47601 1.74723 1.80066 2.38753 2.90331 3.05354 3.15576 3.22301 3.82755 3.88229 4.07594 4.18417 4.23407 4.26023 4.34267 4.52567 4.65567 4.68204 4.80672 4.93175 5.01413 5.03601 5.10812 5.16865 5.23558 5.40122 5.44458 5.55007 5.66722 5.85677 6.22614 6.42540 6.57810 6.69017 6.90097 7.42172 8.91143 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.009957 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.103406 B = 2811.293523 C = 4099.216914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.092 3.908 3 H 0.088 0.912 4 C -0.199 4.199 5 C 0.383 3.617 6 O -0.484 6.484 7 C -0.128 4.128 8 C 0.057 3.943 9 C -0.529 4.529 10 H 0.050 0.950 11 C 0.014 3.986 12 N -0.921 5.921 13 Si 0.938 3.062 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.280 1.280 17 C -0.087 4.087 18 C -0.031 4.031 19 C 0.241 3.759 20 N -0.499 5.499 21 C 0.072 3.928 22 O -0.387 6.387 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.010 0.990 29 H 0.014 0.986 30 H 0.262 0.738 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 13.624 -2.146 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.106 0.894 4 C -0.237 4.237 5 C 0.261 3.739 6 O -0.360 6.360 7 C -0.129 4.129 8 C 0.020 3.980 9 C -0.567 4.567 10 H 0.068 0.932 11 C -0.185 4.185 12 N -0.561 5.561 13 Si 0.764 3.236 14 H -0.199 1.199 15 H -0.204 1.204 16 H -0.206 1.206 17 C -0.126 4.126 18 C -0.071 4.071 19 C -0.075 4.075 20 N -0.177 5.177 21 C -0.004 4.004 22 O -0.306 6.306 23 H 0.111 0.889 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.127 0.873 28 H 0.028 0.972 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.874 13.747 -1.903 14.709 hybrid contribution 0.292 -1.433 1.103 1.831 sum -4.583 12.314 -0.800 13.163 Atomic orbital electron populations 1.21799 0.91255 1.02911 1.03931 1.22286 0.96673 0.95104 0.82474 0.89413 1.23097 0.94082 1.04241 1.02278 1.24906 0.91650 0.69878 0.87477 1.90286 1.63150 1.40879 1.41664 1.22044 0.95901 0.99245 0.95709 1.18800 0.95966 0.87413 0.95855 1.21596 1.35868 0.91934 1.07326 0.93151 1.25626 0.95893 0.98916 0.98021 1.70044 1.44380 1.07911 1.33765 0.85804 0.78513 0.78853 0.80387 1.19926 1.20367 1.20582 1.21221 0.94193 0.93747 1.03421 1.19801 0.81018 0.98793 1.07447 1.29591 0.95544 0.91294 0.91089 1.81179 1.14322 1.10858 1.11371 1.22989 0.79971 0.99980 0.97461 1.87923 1.21745 1.77282 1.43612 0.88940 0.90502 0.92986 0.89026 0.87310 0.97216 0.96814 0.92879 0.92738 0.90045 0.83441 0.86667 0.89140 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.57 71.98 0.69 -1.84 16 2 C 0.09 2.02 3.26 30.71 0.10 2.12 16 3 H 0.09 1.43 8.13 -2.39 -0.02 1.42 16 4 C -0.20 -5.51 5.48 30.23 0.17 -5.34 16 5 C 0.38 12.86 4.47 29.62 0.13 12.99 16 6 O -0.48 -18.31 14.95 -1.45 -0.02 -18.33 16 7 C -0.13 -4.26 0.34 -52.54 -0.02 -4.27 16 8 C 0.06 2.60 3.92 29.85 0.12 2.72 16 9 C -0.53 -27.94 7.77 25.60 0.20 -27.74 16 10 H 0.05 2.73 6.40 -2.91 -0.02 2.71 16 11 C 0.01 0.79 5.46 84.65 0.46 1.25 16 12 N -0.92 -53.11 13.29 21.45 0.28 -52.82 16 13 Si 0.94 44.24 29.54 68.60 2.03 46.26 16 14 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 C -0.09 -2.74 3.68 30.60 0.11 -2.63 16 18 C -0.03 -0.73 5.05 28.79 0.15 -0.58 16 19 C 0.24 6.94 15.43 89.44 1.38 8.32 16 20 N -0.50 -17.14 18.54 20.00 0.37 -16.77 16 21 C 0.07 1.80 5.37 72.11 0.39 2.18 16 22 O -0.39 -10.53 9.94 -148.98 -1.48 -12.01 16 23 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 2.97 8.01 -2.39 -0.02 2.95 16 27 H 0.11 2.51 8.14 -2.39 -0.02 2.50 16 28 H 0.01 0.48 7.61 -2.39 -0.02 0.46 16 29 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.05 2.14 6.76 -2.39 -0.02 2.13 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.15 2.11 6.27 -2.39 -0.01 2.09 16 34 H 0.12 2.79 5.96 -2.39 -0.01 2.77 16 35 H 0.09 1.48 6.05 -2.39 -0.01 1.47 16 36 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -68.00 297.86 6.13 -61.86 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.08 Total: 4.62 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 3.87 Total: -12.82 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: 0.66 Total: -69.59 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.50 Total: -30.34 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -68.00 6.13 -61.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082288721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.391 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds