Wall clock time and date at job start Mon Mar 30 2020 05:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21247 * 119.99855 * 2 1 4 4 N 1.34774 * 120.00056 * 179.97438 * 2 1 3 5 5 C 1.37052 * 120.00129 * 185.05124 * 4 2 1 6 6 C 1.34716 * 119.39552 * 237.00106 * 5 4 2 7 7 C 1.40191 * 121.68559 * 180.25384 * 6 5 4 8 8 O 1.21492 * 119.72594 * 180.19928 * 7 6 5 9 9 C 1.50703 * 120.55505 * 0.17571 * 7 6 5 10 10 C 1.53000 * 109.53727 * 268.82511 * 9 7 6 11 11 C 1.52999 * 109.53880 * 148.65690 * 9 7 6 12 12 C 1.50707 * 109.47197 * 60.00209 * 11 9 7 13 13 H 1.07997 * 119.99645 * 359.97438 * 12 11 9 14 14 C 1.37871 * 119.99828 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00234 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99702 * 179.72201 * 14 12 11 17 17 H 1.48500 * 109.46949 * 60.00496 * 16 14 12 18 18 H 1.48498 * 109.46978 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47265 * 299.99976 * 16 14 12 20 20 C 1.53202 * 109.06243 * 28.78061 * 9 7 6 21 21 C 1.50524 * 119.39726 * 56.97307 * 5 4 2 22 22 H 1.09003 * 109.47462 * 239.99919 * 1 2 3 23 23 H 1.09000 * 109.47605 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47489 * 120.00153 * 1 2 3 25 25 H 0.97000 * 120.00320 * 5.04427 * 4 2 1 26 26 H 1.07999 * 119.15911 * 0.22470 * 6 5 4 27 27 H 1.09007 * 109.47333 * 299.83122 * 10 9 7 28 28 H 1.08998 * 109.47467 * 59.83402 * 10 9 7 29 29 H 1.09004 * 109.46969 * 179.83284 * 10 9 7 30 30 H 1.09000 * 109.46969 * 300.00235 * 11 9 7 31 31 H 1.09003 * 109.47092 * 179.97438 * 11 9 7 32 32 H 0.97002 * 120.00361 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.57298 * 63.09061 * 20 9 7 34 34 H 1.08990 * 109.57196 * 183.47204 * 20 9 7 35 35 H 1.08998 * 109.47304 * 270.28650 * 21 5 4 36 36 H 1.09004 * 109.47322 * 30.28539 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1131 1.0500 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5473 -1.1694 0.1050 6 6 4.2828 -1.7663 -0.8530 7 6 5.6829 -1.8016 -0.7916 8 8 6.3111 -2.3465 -1.6773 9 6 6.4153 -1.1689 0.3635 10 6 6.7529 0.2837 0.0213 11 6 7.7061 -1.9435 0.6369 12 6 8.5809 -1.9110 -0.5898 13 1 8.2492 -1.3904 -1.4759 14 6 9.8047 -2.5460 -0.5808 15 7 10.2083 -3.1804 0.4981 16 14 10.8856 -2.5123 -2.1039 17 1 11.2141 -1.1053 -2.4467 18 1 12.1395 -3.2620 -1.8377 19 1 10.1629 -3.1424 -3.2378 20 6 5.5202 -1.2096 1.6062 21 6 4.1990 -0.5045 1.2878 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3634 -0.5139 -0.8900 25 1 1.6987 -2.0057 -0.0730 26 1 3.7809 -2.2298 -1.6894 27 1 7.3867 0.3103 -0.8652 28 1 5.8327 0.8345 -0.1732 29 1 7.2800 0.7411 0.8587 30 1 7.4641 -2.9773 0.8834 31 1 8.2352 -1.4847 1.4722 32 1 11.0692 -3.6275 0.5044 33 1 5.3238 -2.2460 1.8809 34 1 6.0172 -0.6991 2.4310 35 1 4.3930 0.5425 1.0547 36 1 3.5364 -0.5678 2.1510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082288755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:18 Heat of formation + Delta-G solvation = -62.408681 kcal Electronic energy + Delta-G solvation = -18815.487328 eV Core-core repulsion = 15878.926503 eV Total energy + Delta-G solvation = -2936.560826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70572 -39.37359 -36.48121 -35.17677 -32.96693 -31.56054 -29.80492 -29.22356 -26.79653 -25.48032 -23.02044 -22.24848 -20.94820 -19.95874 -17.74490 -17.14739 -16.38263 -16.13291 -15.53898 -14.88908 -14.47322 -14.33921 -14.02724 -13.64153 -13.54847 -12.95769 -12.71950 -12.58445 -12.50152 -11.87078 -11.68916 -11.43423 -11.34043 -10.96323 -10.75529 -10.50625 -10.39476 -10.23125 -10.21472 -9.87758 -9.31190 -8.90772 -8.54520 -8.33650 -8.07172 -5.80317 -3.75089 1.15157 2.35075 2.94304 3.48335 3.50755 3.57166 3.65156 4.42384 4.65224 4.79373 4.92048 4.98853 5.09971 5.21455 5.40264 5.46789 5.56714 5.69778 5.72082 5.87610 5.98563 6.13165 6.28729 6.37098 6.46972 6.50907 6.64397 6.81457 7.06252 7.07963 7.13052 7.71565 7.78519 7.89636 8.19544 8.53785 8.60293 9.26645 9.84478 11.32195 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.045071 B = 0.005336 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.088994 B = 5246.068578 C = 5417.672279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.523 6.523 4 N -0.685 5.685 5 C 0.183 3.817 6 C -0.247 4.247 7 C 0.389 3.611 8 O -0.420 6.420 9 C -0.102 4.102 10 C -0.123 4.123 11 C 0.042 3.958 12 C -0.484 4.484 13 H 0.064 0.936 14 C 0.050 3.950 15 N -0.907 5.907 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.104 4.104 21 C -0.098 4.098 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.411 0.589 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.015 0.985 31 H 0.024 0.976 32 H 0.257 0.743 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.177 4.215 2.462 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.397 6.397 4 N -0.335 5.335 5 C 0.088 3.912 6 C -0.268 4.268 7 C 0.265 3.735 8 O -0.293 6.293 9 C -0.103 4.103 10 C -0.180 4.180 11 C 0.005 3.995 12 C -0.523 4.523 13 H 0.083 0.917 14 C -0.149 4.149 15 N -0.549 5.549 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.142 4.142 21 C -0.136 4.136 22 H 0.110 0.890 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.249 0.751 26 H 0.142 0.858 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.306 4.607 2.059 19.955 hybrid contribution 0.201 -0.661 -0.843 1.090 sum -19.105 3.946 1.216 19.546 Atomic orbital electron populations 1.21928 0.90843 1.05936 1.04550 1.20998 0.90823 0.83088 0.75220 1.90768 1.70807 1.31043 1.47115 1.43240 1.05967 1.09968 1.74275 1.20247 0.82549 0.94195 0.94230 1.22452 0.97294 1.07947 0.99132 1.20567 0.87623 0.77843 0.87454 1.90645 1.70000 1.32280 1.36371 1.21217 0.98403 0.97962 0.92679 1.21662 1.00082 0.93284 1.02987 1.19090 0.88559 0.94209 0.97673 1.21227 1.00553 1.31910 0.98573 0.91743 1.24944 0.98084 0.96039 0.95790 1.69953 1.20924 1.36198 1.27801 0.86699 0.79574 0.77882 0.84098 1.20519 1.21685 1.20351 1.21740 0.93246 1.00501 0.98668 1.20982 0.97143 1.01291 0.94164 0.89012 0.88618 0.89134 0.75145 0.85824 0.91258 0.94178 0.92237 0.96636 0.95816 0.93388 0.91643 0.90404 0.88336 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.32 36.00 0.37 -0.55 16 2 C 0.51 5.31 7.71 -10.99 -0.08 5.22 16 3 O -0.52 -7.93 16.17 5.59 0.09 -7.84 16 4 N -0.69 -6.76 5.13 -8.33 -0.04 -6.81 16 5 C 0.18 2.51 5.62 -81.59 -0.46 2.05 16 6 C -0.25 -4.05 9.53 -40.10 -0.38 -4.43 16 7 C 0.39 8.19 5.69 -33.57 -0.19 8.00 16 8 O -0.42 -10.67 14.54 5.37 0.08 -10.59 16 9 C -0.10 -2.09 0.54 -155.56 -0.08 -2.17 16 10 C -0.12 -2.39 7.94 37.16 0.29 -2.09 16 11 C 0.04 1.08 3.97 -27.88 -0.11 0.97 16 12 C -0.48 -14.10 6.77 -34.44 -0.23 -14.33 16 13 H 0.06 1.90 5.50 -52.49 -0.29 1.61 16 14 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 15 N -0.91 -28.15 13.29 55.43 0.74 -27.41 16 16 Si 0.89 23.21 29.54 -169.99 -5.02 18.19 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 20 C -0.10 -1.67 4.79 -26.57 -0.13 -1.80 16 21 C -0.10 -1.36 4.82 -27.91 -0.13 -1.49 16 22 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.41 2.57 8.82 -40.82 -0.36 2.21 16 26 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.07 1.49 6.64 -51.93 -0.34 1.15 16 28 H 0.04 0.69 6.53 -51.93 -0.34 0.35 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.48 6.24 -51.93 -0.32 1.15 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -36.22 296.50 -5.95 -42.16 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.02 Total: -2.95 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.24 Total: -9.22 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.69 Total: -34.22 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.17 Total: -18.43 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.22 -5.95 -42.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082288755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.248 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds