Wall clock time and date at job start Mon Mar 30 2020 03:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99661 * 2 1 4 4 C 1.53002 * 109.47027 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47082 * 65.00064 * 4 3 2 6 6 C 1.35569 * 119.47032 * 89.99888 * 5 4 3 7 7 C 1.50697 * 118.96735 * 359.97438 * 6 5 4 8 8 C 1.35930 * 122.05931 * 179.97438 * 6 5 4 9 9 C 1.38993 * 120.84054 * 0.02562 * 8 6 5 10 10 C 1.50699 * 120.58452 * 179.97438 * 9 8 6 11 11 C 1.40622 * 118.83185 * 0.24466 * 9 8 6 12 12 C 1.40506 * 120.92538 * 179.75237 * 11 9 8 13 13 H 1.07996 * 120.00111 * 36.10475 * 12 11 9 14 14 C 1.40042 * 119.99957 * 216.10706 * 12 11 9 15 15 N 1.30849 * 119.99956 * 20.12100 * 14 12 11 16 16 Si 1.86801 * 119.99952 * 200.12186 * 14 12 11 17 17 H 1.48501 * 109.47033 * 90.00255 * 16 14 12 18 18 H 1.48496 * 109.46766 * 209.99751 * 16 14 12 19 19 H 1.48497 * 109.47077 * 329.99749 * 16 14 12 20 20 C 1.34786 * 119.47681 * 269.97947 * 5 4 3 21 21 O 1.21790 * 120.46697 * 0.02562 * 20 5 4 22 22 H 1.08997 * 109.47423 * 59.99548 * 1 2 3 23 23 H 1.08996 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46971 * 299.99798 * 1 2 3 25 25 H 1.09009 * 109.46958 * 60.00661 * 3 2 1 26 26 H 1.08999 * 109.47532 * 300.00318 * 3 2 1 27 27 H 1.09003 * 109.47195 * 305.00407 * 4 3 2 28 28 H 1.09003 * 109.47214 * 185.00677 * 4 3 2 29 29 H 1.09006 * 109.46955 * 180.02562 * 7 6 5 30 30 H 1.08996 * 109.47518 * 300.01968 * 7 6 5 31 31 H 1.09006 * 109.47112 * 60.02247 * 7 6 5 32 32 H 1.07995 * 119.57599 * 180.02562 * 8 6 5 33 33 H 1.09000 * 109.46981 * 359.97438 * 10 9 8 34 34 H 1.08995 * 109.46933 * 239.99486 * 10 9 8 35 35 H 1.09000 * 109.47375 * 119.99584 * 10 9 8 36 36 H 0.97004 * 119.99842 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.2602 1.3487 -2.3214 7 6 4.1143 2.8428 -2.1899 8 6 4.6732 0.8293 -3.5078 9 6 4.8205 -0.5430 -3.6721 10 6 5.2781 -1.1126 -4.9902 11 6 4.5296 -1.3909 -2.5887 12 6 4.6584 -2.7849 -2.7078 13 1 5.4556 -3.2046 -3.3033 14 6 3.7529 -3.6302 -2.0545 15 7 2.5887 -3.1714 -1.6721 16 14 4.2072 -5.4126 -1.7288 17 1 4.8772 -5.5192 -0.4078 18 1 2.9773 -6.2447 -1.7286 19 1 5.1282 -5.8907 -2.7911 20 6 4.0916 -0.7764 -1.3237 21 8 3.8330 -1.4707 -0.3571 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6886 1.8464 0.8901 26 1 1.6885 1.8465 -0.8899 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1766 0.0890 29 1 4.3803 3.3183 -3.1340 30 1 3.0820 3.0863 -1.9388 31 1 4.7749 3.2044 -1.4019 32 1 4.8895 1.4914 -4.3331 33 1 5.4459 -0.3009 -5.6981 34 1 4.5131 -1.7832 -5.3813 35 1 6.2061 -1.6656 -4.8445 36 1 1.9617 -3.7568 -1.2192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082665831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:41 Heat of formation + Delta-G solvation = -56.571448 kcal Electronic energy + Delta-G solvation = -19487.244586 eV Core-core repulsion = 16550.936881 eV Total energy + Delta-G solvation = -2936.307704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.56316 -37.12799 -35.51889 -34.58614 -32.64070 -30.66638 -29.45957 -27.77870 -26.62412 -25.47530 -23.74207 -22.28322 -20.96479 -19.19370 -17.66072 -16.29248 -16.00289 -15.31398 -14.94252 -14.91911 -14.47558 -14.06138 -13.49801 -12.90679 -12.57084 -12.48356 -12.26206 -12.07061 -11.93460 -11.76355 -11.49963 -11.32251 -11.18797 -11.16866 -10.73721 -10.58319 -10.53179 -10.25107 -9.74580 -9.65463 -9.12326 -8.94121 -8.17178 -7.84442 -6.76866 -6.24290 -4.03738 2.57851 3.15978 3.20793 3.24902 3.70404 4.03828 4.12588 4.33510 4.79959 5.41960 5.52290 5.54801 5.67745 5.70831 5.75938 5.82367 5.83300 5.88519 6.12355 6.14880 6.22663 6.36310 6.49306 6.52516 6.82443 6.91958 6.93707 7.09740 7.21563 7.61936 7.73110 7.76811 8.07035 8.30016 8.39898 8.73123 8.95551 9.00994 9.94967 10.30191 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.010724 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.472933 B = 2610.430964 C = 3718.804937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.048 3.952 4 C 0.104 3.896 5 N -0.495 5.495 6 C -0.042 4.042 7 C -0.087 4.087 8 C -0.107 4.107 9 C -0.272 4.272 10 C -0.056 4.056 11 C 0.052 3.948 12 C -0.420 4.420 13 H 0.087 0.913 14 C 0.081 3.919 15 N -0.725 5.725 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.263 1.263 20 C 0.522 3.478 21 O -0.525 6.525 22 H 0.032 0.968 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 7.595 1.125 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.267 6.267 3 C -0.030 4.030 4 C -0.019 4.019 5 N -0.214 5.214 6 C -0.142 4.142 7 C -0.144 4.144 8 C -0.131 4.131 9 C -0.276 4.276 10 C -0.113 4.113 11 C 0.045 3.955 12 C -0.448 4.448 13 H 0.105 0.895 14 C -0.144 4.144 15 N -0.346 5.346 16 Si 0.730 3.270 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.187 1.187 20 C 0.318 3.682 21 O -0.403 6.403 22 H 0.050 0.950 23 H 0.101 0.899 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.080 6.952 1.847 7.488 hybrid contribution -0.212 -0.353 0.199 0.457 sum -2.292 6.600 2.046 7.280 Atomic orbital electron populations 1.22626 0.82675 1.02352 0.98387 1.88313 1.17967 1.25496 1.94905 1.22908 0.94749 0.86201 0.99131 1.21494 0.92443 0.98704 0.89272 1.44510 1.59426 1.07386 1.10115 1.19047 1.14602 0.90995 0.89584 1.20547 1.00213 0.92163 1.01484 1.19536 1.04426 0.94814 0.94304 1.19346 1.20942 0.92056 0.95231 1.20015 0.98943 0.98194 0.94151 1.19384 0.93279 0.93632 0.89195 1.19187 1.10317 0.90195 1.25088 0.89536 1.25866 0.94175 1.01019 0.93373 1.69764 1.04551 1.37340 1.22905 0.86358 0.78961 0.81761 0.79899 1.19291 1.20473 1.18728 1.19151 0.79292 0.79454 0.90288 1.90676 1.50504 1.60172 1.38914 0.94950 0.89945 0.95348 0.93684 0.93628 0.89330 0.89664 0.91786 0.93352 0.93256 0.88363 0.95116 0.93865 0.94577 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.01 101.05 1.11 1.73 16 2 O -0.35 -7.56 9.46 -43.41 -0.41 -7.97 16 3 C 0.05 0.86 6.22 37.16 0.23 1.09 16 4 C 0.10 1.98 5.30 -4.04 -0.02 1.96 16 5 N -0.49 -11.47 2.57 -112.74 -0.29 -11.76 16 6 C -0.04 -0.89 6.66 -81.77 -0.54 -1.43 16 7 C -0.09 -1.35 8.67 36.00 0.31 -1.04 16 8 C -0.11 -2.38 9.18 -40.13 -0.37 -2.75 16 9 C -0.27 -6.76 5.98 -103.44 -0.62 -7.37 16 10 C -0.06 -1.22 9.13 36.00 0.33 -0.89 16 11 C 0.05 1.44 5.53 -104.46 -0.58 0.86 16 12 C -0.42 -11.59 8.24 -38.05 -0.31 -11.90 16 13 H 0.09 2.27 7.44 -52.49 -0.39 1.88 16 14 C 0.08 2.18 4.59 -17.29 -0.08 2.10 16 15 N -0.73 -20.34 11.18 55.55 0.62 -19.72 16 16 Si 0.91 20.11 29.61 -169.99 -5.03 15.07 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 20 C 0.52 14.36 6.74 -12.58 -0.08 14.28 16 21 O -0.52 -15.61 12.94 -3.07 -0.04 -15.65 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.05 0.79 7.18 -51.93 -0.37 0.41 16 27 H 0.09 1.82 7.40 -51.93 -0.38 1.43 16 28 H 0.09 1.29 6.30 -51.93 -0.33 0.96 16 29 H 0.06 0.89 7.76 -51.93 -0.40 0.48 16 30 H 0.05 0.70 7.05 -51.93 -0.37 0.34 16 31 H 0.05 0.69 7.31 -51.93 -0.38 0.31 16 32 H 0.10 1.89 7.74 -52.49 -0.41 1.49 16 33 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.28 7.34 8.30 -40.82 -0.34 7.00 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -32.41 297.38 -6.39 -38.80 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.10 Total: 0.11 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.62 Total: -3.38 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.33 Total: -31.48 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.45 Total: -23.61 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.41 -6.39 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082665831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.770 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds