Wall clock time and date at job start Mon Mar 30 2020 04:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 116.99581 * 2 1 4 4 C 1.38793 * 120.03060 * 359.97438 * 3 2 1 5 5 C 1.38153 * 120.05148 * 180.02562 * 4 3 2 6 6 C 1.38194 * 120.11281 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.97300 * 180.27090 * 6 5 4 8 8 C 1.53007 * 109.46598 * 119.72524 * 7 6 5 9 9 N 1.46892 * 109.47181 * 359.72813 * 7 6 5 10 10 C 1.50701 * 109.47156 * 239.72457 * 7 6 5 11 11 H 1.07999 * 120.00144 * 0.02562 * 10 7 6 12 12 C 1.37883 * 119.99419 * 180.02562 * 10 7 6 13 13 N 1.31505 * 120.00341 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99402 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47476 * 59.99685 * 14 12 10 16 16 H 1.48505 * 109.46761 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47128 * 299.99482 * 14 12 10 18 18 C 1.38755 * 120.05434 * 0.02562 * 6 5 4 19 19 O 1.35898 * 120.02843 * 180.02562 * 18 6 5 20 20 C 1.42897 * 117.00072 * 179.97438 * 19 18 6 21 21 C 1.38623 * 120.02274 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47282 * 299.99620 * 1 2 3 24 24 H 1.09005 * 109.47585 * 60.00054 * 1 2 3 25 25 H 1.07996 * 119.97040 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.94251 * 179.97438 * 5 4 3 27 27 H 1.08997 * 109.46805 * 60.00472 * 8 7 6 28 28 H 1.08996 * 109.46952 * 179.97438 * 8 7 6 29 29 H 1.08995 * 109.47110 * 299.99988 * 8 7 6 30 30 H 1.00898 * 111.00566 * 300.00112 * 9 7 6 31 31 H 1.00908 * 111.00195 * 63.94930 * 9 7 6 32 32 H 0.97000 * 120.00334 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.46749 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.47251 * 300.00322 * 20 19 18 35 35 H 1.09003 * 109.46850 * 60.00726 * 20 19 18 36 36 H 1.07994 * 120.05043 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 -0.0005 5 6 1.9172 3.6065 -0.0011 6 6 3.2970 3.6821 -0.0016 7 6 3.9774 5.0269 0.0040 8 6 4.8466 5.1533 1.2568 9 7 2.9627 6.0890 0.0028 10 6 4.8425 5.1573 -1.2230 11 1 4.8943 4.3476 -1.9358 12 6 5.5681 6.3104 -1.4355 13 7 5.5055 7.2961 -0.5673 14 14 6.6399 6.4722 -2.9568 15 1 5.7958 6.3503 -4.1724 16 1 7.3113 7.7968 -2.9505 17 1 7.6654 5.3981 -2.9564 18 6 4.0566 2.5210 -0.0021 19 8 5.4136 2.5960 -0.0021 20 6 6.1316 1.3605 -0.0022 21 6 3.4302 1.2841 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.2120 2.3187 -0.0005 26 1 1.3276 4.5114 -0.0019 27 1 5.5996 4.3652 1.2576 28 1 5.3390 6.1257 1.2607 29 1 4.2208 5.0590 2.1442 30 1 2.3752 6.0271 -0.8152 31 1 2.4106 6.0627 0.8471 32 1 6.0156 8.1074 -0.7170 33 1 7.2027 1.5628 -0.0017 34 1 5.8699 0.7881 0.8878 35 1 5.8700 0.7882 -0.8922 36 1 4.0196 0.3792 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084402187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:39 Heat of formation + Delta-G solvation = -33.830298 kcal Electronic energy + Delta-G solvation = -19179.450000 eV Core-core repulsion = 16244.128426 eV Total energy + Delta-G solvation = -2935.321574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08329 -38.54029 -36.61747 -34.60797 -31.53799 -29.93844 -29.15442 -27.24840 -26.89066 -26.52277 -24.97495 -22.13476 -21.36591 -19.27594 -18.25091 -16.48528 -15.98435 -15.64327 -15.55366 -15.26380 -14.99142 -14.41592 -14.00783 -13.87375 -13.49875 -12.87903 -12.40607 -12.31611 -12.10152 -11.92699 -11.37896 -11.18664 -11.01283 -10.73591 -10.68479 -10.52550 -10.37648 -10.03974 -9.90484 -9.53956 -8.93236 -8.24210 -8.06376 -7.18845 -7.02812 -5.69745 -3.83645 1.89798 2.05881 3.42572 3.45636 3.46812 3.50150 3.98342 4.32824 4.60968 5.07805 5.19544 5.30569 5.36428 5.44023 5.49827 5.51075 5.56591 5.74148 5.86057 5.96614 6.05577 6.17878 6.31660 6.72860 6.85398 6.93383 7.07341 7.20884 7.35946 7.49861 7.67154 7.98529 8.08085 8.18399 8.50567 8.79375 9.10311 9.27892 9.81747 11.30290 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.007321 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.677828 B = 3823.677996 C = 4222.074195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.133 3.867 4 C -0.244 4.244 5 C -0.071 4.071 6 C -0.129 4.129 7 C 0.289 3.711 8 C -0.123 4.123 9 N -0.808 5.808 10 C -0.502 4.502 11 H 0.050 0.950 12 C 0.084 3.916 13 N -0.849 5.849 14 Si 0.880 3.120 15 H -0.281 1.281 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.176 3.824 19 O -0.271 6.271 20 C 0.022 3.978 21 C -0.249 4.249 22 H 0.093 0.907 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.044 0.956 28 H 0.091 0.909 29 H -0.001 1.001 30 H 0.318 0.682 31 H 0.297 0.703 32 H 0.252 0.748 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 -11.575 2.355 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.089 3.911 4 C -0.263 4.263 5 C -0.089 4.089 6 C -0.132 4.132 7 C 0.197 3.803 8 C -0.181 4.181 9 N -0.335 5.335 10 C -0.541 4.541 11 H 0.068 0.932 12 C -0.121 4.121 13 N -0.485 5.485 14 Si 0.708 3.292 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.206 1.206 18 C 0.129 3.871 19 O -0.183 6.183 20 C -0.074 4.074 21 C -0.268 4.268 22 H 0.111 0.889 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.018 0.982 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.421 -10.865 2.383 12.374 hybrid contribution -0.461 -0.988 -0.921 1.427 sum -5.882 -11.853 1.462 13.313 Atomic orbital electron populations 1.22941 0.79092 1.03087 1.01263 1.85985 1.20831 1.27662 1.89390 1.18500 0.91469 0.83659 0.97474 1.20939 0.99094 0.92401 1.13884 1.20657 0.93717 0.96699 0.97825 1.21120 0.92530 0.98065 1.01489 1.17324 0.88374 0.78866 0.95708 1.21767 0.98757 1.03962 0.93625 1.59134 1.18237 1.52699 1.03393 1.20656 1.26190 1.01068 1.06167 0.93197 1.24856 0.95805 0.95838 0.95607 1.70010 1.39450 1.04908 1.34123 0.86897 0.81000 0.76872 0.84406 1.20662 1.21545 1.20562 1.18546 0.83034 0.92033 0.93483 1.86509 1.14638 1.29756 1.87374 1.23013 0.97251 0.86791 1.00370 1.20333 0.92457 0.97416 1.16609 0.88888 0.92935 0.92900 0.86437 0.85821 0.93744 0.89072 0.98152 0.86929 0.89198 0.93734 0.88688 0.93511 0.93347 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -5.00 10.49 -19.41 -0.20 -5.20 16 3 C 0.13 2.33 6.68 -39.23 -0.26 2.07 16 4 C -0.24 -4.13 9.04 -39.41 -0.36 -4.49 16 5 C -0.07 -1.33 9.03 -39.63 -0.36 -1.69 16 6 C -0.13 -2.81 4.74 -104.44 -0.50 -3.31 16 7 C 0.29 7.05 0.55 -133.90 -0.07 6.98 16 8 C -0.12 -3.05 8.29 37.16 0.31 -2.75 16 9 N -0.81 -18.76 7.48 -1.14 -0.01 -18.77 16 10 C -0.50 -13.72 7.09 -34.44 -0.24 -13.96 16 11 H 0.05 1.41 7.53 -52.49 -0.40 1.01 16 12 C 0.08 2.33 5.23 -17.82 -0.09 2.23 16 13 N -0.85 -24.17 10.80 55.43 0.60 -23.57 16 14 Si 0.88 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.18 3.66 6.17 -39.24 -0.24 3.42 16 19 O -0.27 -5.63 7.16 -19.42 -0.14 -5.77 16 20 C 0.02 0.32 9.81 101.05 0.99 1.32 16 21 C -0.25 -4.58 8.97 -39.29 -0.35 -4.93 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.12 1.64 6.29 -52.49 -0.33 1.31 16 26 H 0.12 2.14 6.18 -52.48 -0.32 1.81 16 27 H 0.04 1.09 6.14 -51.93 -0.32 0.77 16 28 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 29 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16 30 H 0.32 7.10 8.04 -39.29 -0.32 6.78 16 31 H 0.30 6.19 8.25 -39.29 -0.32 5.87 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 35 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 36 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 LS Contribution 290.40 15.07 4.38 4.38 Total: -1.00 -30.93 290.40 -5.23 -36.17 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.65 Total: 9.96 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -0.19 Total: -13.77 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.59 Total: -42.34 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.34 Total: -10.97 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.93 -5.23 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084402187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.335 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds