Wall clock time and date at job start Mon Mar 30 2020 04:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 116.99581 * 2 1 4 4 C 1.38793 * 120.03060 * 359.97438 * 3 2 1 5 5 C 1.38153 * 120.05148 * 180.02562 * 4 3 2 6 6 C 1.38194 * 120.11281 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.97300 * 180.27090 * 6 5 4 8 8 C 1.53007 * 109.46598 * 119.72524 * 7 6 5 9 9 N 1.46892 * 109.47181 * 359.72813 * 7 6 5 10 10 C 1.50701 * 109.47156 * 239.72457 * 7 6 5 11 11 H 1.07999 * 120.00144 * 0.02562 * 10 7 6 12 12 C 1.37883 * 119.99419 * 180.02562 * 10 7 6 13 13 N 1.31505 * 120.00341 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99402 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47476 * 59.99685 * 14 12 10 16 16 H 1.48505 * 109.46761 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47128 * 299.99482 * 14 12 10 18 18 C 1.38755 * 120.05434 * 0.02562 * 6 5 4 19 19 O 1.35898 * 120.02843 * 180.02562 * 18 6 5 20 20 C 1.42897 * 117.00072 * 179.97438 * 19 18 6 21 21 C 1.38623 * 120.02274 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47282 * 299.99620 * 1 2 3 24 24 H 1.09005 * 109.47585 * 60.00054 * 1 2 3 25 25 H 1.07996 * 119.97040 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.94251 * 179.97438 * 5 4 3 27 27 H 1.08997 * 109.46805 * 60.00472 * 8 7 6 28 28 H 1.08996 * 109.46952 * 179.97438 * 8 7 6 29 29 H 1.08995 * 109.47110 * 299.99988 * 8 7 6 30 30 H 1.00898 * 111.00566 * 300.00112 * 9 7 6 31 31 H 1.00908 * 111.00195 * 63.94930 * 9 7 6 32 32 H 0.97000 * 120.00334 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.46749 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.47251 * 300.00322 * 20 19 18 35 35 H 1.09003 * 109.46850 * 60.00726 * 20 19 18 36 36 H 1.07994 * 120.05043 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 -0.0005 5 6 1.9172 3.6065 -0.0011 6 6 3.2970 3.6821 -0.0016 7 6 3.9774 5.0269 0.0040 8 6 4.8466 5.1533 1.2568 9 7 2.9627 6.0890 0.0028 10 6 4.8425 5.1573 -1.2230 11 1 4.8943 4.3476 -1.9358 12 6 5.5681 6.3104 -1.4355 13 7 5.5055 7.2961 -0.5673 14 14 6.6399 6.4722 -2.9568 15 1 5.7958 6.3503 -4.1724 16 1 7.3113 7.7968 -2.9505 17 1 7.6654 5.3981 -2.9564 18 6 4.0566 2.5210 -0.0021 19 8 5.4136 2.5960 -0.0021 20 6 6.1316 1.3605 -0.0022 21 6 3.4302 1.2841 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.2120 2.3187 -0.0005 26 1 1.3276 4.5114 -0.0019 27 1 5.5996 4.3652 1.2576 28 1 5.3390 6.1257 1.2607 29 1 4.2208 5.0590 2.1442 30 1 2.3752 6.0271 -0.8152 31 1 2.4106 6.0627 0.8471 32 1 6.0156 8.1074 -0.7170 33 1 7.2027 1.5628 -0.0017 34 1 5.8699 0.7881 0.8878 35 1 5.8700 0.7882 -0.8922 36 1 4.0196 0.3792 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084402187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:38 Heat of formation + Delta-G solvation = -55.242048 kcal Electronic energy + Delta-G solvation = -19180.378483 eV Core-core repulsion = 16244.128426 eV Total energy + Delta-G solvation = -2936.250057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46090 -39.82046 -38.16719 -36.23507 -33.51469 -31.33606 -30.62085 -28.98901 -27.97917 -27.79271 -27.05648 -23.67526 -22.72554 -21.02818 -19.53428 -18.24346 -17.47427 -16.97764 -16.93520 -16.71607 -16.28266 -16.09765 -15.77282 -15.37604 -14.97674 -14.48720 -13.97194 -13.65337 -13.52123 -13.13075 -13.04255 -12.74246 -12.67915 -12.43406 -12.30653 -12.22929 -11.95043 -11.74690 -11.42903 -11.37747 -10.87008 -10.33993 -9.45891 -8.82476 -8.66413 -7.77499 -5.96693 0.48054 0.63523 1.46097 1.46756 1.53398 2.32572 2.54879 2.69045 2.91368 3.40207 3.90518 4.14830 4.21199 4.31832 4.42190 4.42897 4.43124 4.44215 4.61380 4.69659 4.73608 4.79505 4.79759 5.03685 5.29978 5.31719 5.41777 5.58377 5.63065 5.75647 5.88761 6.13080 6.44821 6.51477 6.71059 6.86009 7.23800 7.41033 7.70941 9.19518 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.007321 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.677828 B = 3823.677996 C = 4222.074195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.139 3.861 4 C -0.240 4.240 5 C -0.070 4.070 6 C -0.167 4.167 7 C 0.289 3.711 8 C -0.113 4.113 9 N -0.817 5.817 10 C -0.506 4.506 11 H 0.032 0.968 12 C 0.041 3.959 13 N -0.872 5.872 14 Si 0.932 3.068 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.279 1.279 18 C 0.161 3.839 19 O -0.307 6.307 20 C 0.014 3.986 21 C -0.256 4.256 22 H 0.122 0.878 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.152 0.848 26 H 0.135 0.865 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.010 0.990 30 H 0.322 0.678 31 H 0.310 0.690 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 -13.289 2.168 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.094 3.906 4 C -0.259 4.259 5 C -0.088 4.088 6 C -0.170 4.170 7 C 0.197 3.803 8 C -0.171 4.171 9 N -0.345 5.345 10 C -0.545 4.545 11 H 0.051 0.949 12 C -0.161 4.161 13 N -0.509 5.509 14 Si 0.759 3.241 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.205 1.205 18 C 0.114 3.886 19 O -0.219 6.219 20 C -0.081 4.081 21 C -0.275 4.275 22 H 0.140 0.860 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.169 0.831 26 H 0.153 0.847 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.866 -12.601 2.194 14.517 hybrid contribution -0.108 -0.614 -0.836 1.043 sum -6.974 -13.215 1.357 15.004 Atomic orbital electron populations 1.23336 0.76445 1.05509 1.02215 1.85991 1.23503 1.26436 1.88835 1.18644 0.91416 0.84709 0.95826 1.21232 1.00779 0.91316 1.12529 1.20822 0.92758 0.98161 0.97057 1.20940 0.93878 0.97050 1.05163 1.17077 0.88421 0.80848 0.93929 1.21605 0.98824 1.01876 0.94804 1.58956 1.18485 1.52852 1.04246 1.20847 1.26635 1.00246 1.06814 0.94943 1.25430 0.97023 0.95846 0.97845 1.70138 1.40343 1.05104 1.35314 0.86075 0.79592 0.76735 0.81696 1.20609 1.21247 1.20460 1.18688 0.83185 0.92647 0.94041 1.86423 1.15096 1.32769 1.87609 1.23283 0.97536 0.85514 1.01719 1.20495 0.93384 0.97153 1.16474 0.85955 0.91785 0.92021 0.83092 0.84698 0.94303 0.92001 0.97054 0.86538 0.87742 0.94124 0.87315 0.91685 0.92335 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -9.15 10.49 -92.36 -0.97 -10.12 16 3 C 0.14 4.51 6.68 22.49 0.15 4.66 16 4 C -0.24 -7.44 9.04 22.38 0.20 -7.24 16 5 C -0.07 -2.53 9.03 22.24 0.20 -2.33 16 6 C -0.17 -7.25 4.74 -19.75 -0.09 -7.35 16 7 C 0.29 14.25 0.55 2.04 0.00 14.25 16 8 C -0.11 -5.72 8.29 71.98 0.60 -5.12 16 9 N -0.82 -38.04 7.48 -157.51 -1.18 -39.22 16 10 C -0.51 -28.12 7.09 25.60 0.18 -27.94 16 11 H 0.03 1.87 7.53 -2.91 -0.02 1.85 16 12 C 0.04 2.30 5.23 84.66 0.44 2.74 16 13 N -0.87 -50.49 10.80 21.45 0.23 -50.26 16 14 Si 0.93 44.91 29.54 68.60 2.03 46.93 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 18 C 0.16 6.65 6.17 22.49 0.14 6.79 16 19 O -0.31 -12.80 7.16 -92.40 -0.66 -13.46 16 20 C 0.01 0.42 9.81 113.37 1.11 1.53 16 21 C -0.26 -9.01 8.97 22.46 0.20 -8.81 16 22 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.06 0.98 7.66 -2.38 -0.02 0.97 16 25 H 0.15 3.58 6.29 -2.91 -0.02 3.56 16 26 H 0.14 4.45 6.18 -2.91 -0.02 4.43 16 27 H 0.04 1.95 6.14 -2.39 -0.01 1.93 16 28 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.32 14.33 8.04 -89.70 -0.72 13.61 16 31 H 0.31 12.85 8.25 -89.69 -0.74 12.11 16 32 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 35 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 36 H 0.14 4.38 6.30 -2.91 -0.02 4.36 16 Total: -1.00 -66.63 290.40 3.35 -63.28 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.35 Total: 30.21 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 4.25 Total: -27.37 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -0.95 Total: -89.48 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -1.63 Total: -23.58 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.63 3.35 -63.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084402187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.037 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds