Wall clock time and date at job start Mon Mar 30 2020 04:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 117.00178 * 2 1 4 4 C 1.38798 * 120.02988 * 0.02562 * 3 2 1 5 5 C 1.38145 * 120.05557 * 179.97438 * 4 3 2 6 6 C 1.38199 * 120.11242 * 359.74773 * 5 4 3 7 7 C 1.50704 * 119.97654 * 180.25527 * 6 5 4 8 8 C 1.52995 * 109.46996 * 240.25680 * 7 6 5 9 9 N 1.46901 * 109.46674 * 0.25110 * 7 6 5 10 10 C 1.50699 * 109.47252 * 120.25286 * 7 6 5 11 11 H 1.08003 * 119.99437 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99583 * 180.02562 * 10 7 6 13 13 N 1.31505 * 120.00493 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99570 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47377 * 59.99982 * 14 12 10 16 16 H 1.48495 * 109.47082 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46996 * 299.99782 * 14 12 10 18 18 C 1.38750 * 120.05389 * 0.50871 * 6 5 4 19 19 O 1.35891 * 120.03171 * 179.77047 * 18 6 5 20 20 C 1.42903 * 117.00396 * 179.72455 * 19 18 6 21 21 C 1.38616 * 120.02656 * 180.02562 * 3 2 1 22 22 H 1.08996 * 109.47233 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47186 * 300.00432 * 1 2 3 24 24 H 1.08998 * 109.46835 * 60.00391 * 1 2 3 25 25 H 1.08000 * 119.96937 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.94392 * 180.02562 * 5 4 3 27 27 H 1.08999 * 109.47946 * 59.99714 * 8 7 6 28 28 H 1.08998 * 109.47234 * 180.02562 * 8 7 6 29 29 H 1.09002 * 109.47190 * 299.99766 * 8 7 6 30 30 H 1.00896 * 111.00055 * 60.00777 * 9 7 6 31 31 H 1.00905 * 110.99485 * 183.95109 * 9 7 6 32 32 H 0.97003 * 120.00501 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 34 34 H 1.09001 * 109.46938 * 59.99709 * 20 19 18 35 35 H 1.09004 * 109.46926 * 299.99830 * 20 19 18 36 36 H 1.08003 * 120.05589 * 0.03821 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3753 0.0005 5 6 1.9173 3.6064 0.0011 6 6 3.2972 3.6820 0.0063 7 6 3.9776 5.0267 0.0127 8 6 4.8510 5.1622 -1.2361 9 7 2.9628 6.0888 0.0182 10 6 4.8387 5.1482 1.2435 11 1 4.8885 4.3330 1.9502 12 6 5.5627 6.3000 1.4673 13 7 5.5015 7.2927 0.6070 14 14 6.6305 6.4503 2.9926 15 1 7.6568 5.3770 2.9862 16 1 7.2999 7.7758 2.9996 17 1 5.7833 6.3178 4.2051 18 6 4.0568 2.5209 0.0004 19 8 5.4136 2.5958 0.0009 20 6 6.1317 1.3603 0.0007 21 6 3.4302 1.2839 -0.0005 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2121 2.3188 0.0014 26 1 1.3278 4.5114 0.0019 27 1 4.2283 5.0744 -2.1264 28 1 5.3435 6.1346 -1.2313 29 1 5.6039 4.3741 -1.2403 30 1 2.3728 6.0210 0.8338 31 1 3.3926 6.9998 -0.0424 32 1 6.0112 8.1030 0.7643 33 1 7.2028 1.5625 0.0007 34 1 5.8702 0.7882 -0.8895 35 1 5.8697 0.7877 0.8905 36 1 4.0197 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084402189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:42 Heat of formation + Delta-G solvation = -42.969334 kcal Electronic energy + Delta-G solvation = -19180.353973 eV Core-core repulsion = 16244.636101 eV Total energy + Delta-G solvation = -2935.717872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97713 -38.46948 -36.48727 -34.73434 -31.48248 -29.83793 -29.10649 -27.16107 -26.79019 -26.51176 -25.08281 -22.06918 -21.33056 -19.22957 -18.14284 -16.57866 -15.98204 -15.57620 -15.48501 -15.28052 -14.95143 -14.46795 -13.97002 -13.83433 -13.07532 -12.72124 -12.33946 -12.21955 -12.07125 -11.72593 -11.35223 -11.19115 -11.05895 -10.88500 -10.73071 -10.48168 -10.31824 -10.08602 -9.88779 -9.63538 -9.33048 -8.48082 -7.95323 -7.26712 -6.98374 -5.93013 -4.07106 2.04516 2.16078 3.30807 3.35460 3.39344 3.53650 4.04042 4.38433 4.52082 5.16559 5.25868 5.26769 5.41950 5.47612 5.50383 5.59304 5.61890 5.78882 5.88621 6.05523 6.18674 6.40669 6.54942 6.85449 6.96587 7.09798 7.15932 7.33507 7.42728 7.67285 7.77394 7.89646 8.09584 8.20041 8.32206 8.83175 9.05816 9.21981 9.61846 11.02160 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.007315 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.742487 B = 3826.994831 C = 4221.480998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.326 6.326 3 C 0.133 3.867 4 C -0.250 4.250 5 C -0.046 4.046 6 C -0.092 4.092 7 C 0.276 3.724 8 C -0.124 4.124 9 N -0.849 5.849 10 C -0.514 4.514 11 H 0.052 0.948 12 C 0.066 3.934 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.280 1.280 18 C 0.169 3.831 19 O -0.275 6.275 20 C 0.022 3.978 21 C -0.251 4.251 22 H 0.092 0.908 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.117 0.883 26 H 0.138 0.862 27 H 0.011 0.989 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.311 0.689 31 H 0.356 0.644 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 -10.391 -1.442 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.088 3.912 4 C -0.269 4.269 5 C -0.064 4.064 6 C -0.094 4.094 7 C 0.185 3.815 8 C -0.182 4.182 9 N -0.379 5.379 10 C -0.554 4.554 11 H 0.070 0.930 12 C -0.135 4.135 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.206 1.206 18 C 0.122 3.878 19 O -0.187 6.187 20 C -0.073 4.073 21 C -0.271 4.271 22 H 0.110 0.890 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.135 0.865 26 H 0.156 0.844 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.173 0.827 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.501 -10.544 -2.171 12.089 hybrid contribution 0.876 0.118 1.822 2.026 sum -4.625 -10.425 -0.348 11.411 Atomic orbital electron populations 1.22929 0.79162 1.02966 1.01295 1.85972 1.20782 1.27796 1.89442 1.18519 0.91455 0.83657 0.97540 1.21041 0.99132 0.92517 1.14217 1.20770 0.93787 0.96689 0.95139 1.19852 0.92294 0.95241 1.01978 1.17087 0.87308 0.83288 0.93864 1.21715 0.98449 1.03292 0.94707 1.59507 1.24906 1.09332 1.44181 1.21688 1.26594 1.00629 1.06466 0.92970 1.24914 0.96259 0.95909 0.96400 1.69672 1.42804 1.05816 1.35308 0.86658 0.80780 0.76991 0.83503 1.20369 1.21418 1.20570 1.18572 0.82823 0.92228 0.94159 1.86481 1.14839 1.29757 1.87623 1.22992 0.97118 0.86842 1.00391 1.20238 0.92432 0.97178 1.17229 0.89006 0.92920 0.92911 0.86480 0.84416 0.97035 0.90022 0.93798 0.88006 0.82728 0.92780 0.88861 0.93490 0.93390 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.33 -5.15 10.49 -19.40 -0.20 -5.35 16 3 C 0.13 2.38 6.68 -39.23 -0.26 2.12 16 4 C -0.25 -4.40 9.04 -39.41 -0.36 -4.75 16 5 C -0.05 -0.91 9.16 -39.63 -0.36 -1.27 16 6 C -0.09 -2.08 4.74 -104.45 -0.50 -2.57 16 7 C 0.28 6.80 0.65 -133.91 -0.09 6.72 16 8 C -0.12 -3.10 8.29 37.16 0.31 -2.79 16 9 N -0.85 -19.95 7.72 -1.14 -0.01 -19.96 16 10 C -0.51 -13.80 7.09 -34.44 -0.24 -14.04 16 11 H 0.05 1.46 7.54 -52.48 -0.40 1.06 16 12 C 0.07 1.76 5.22 -17.82 -0.09 1.67 16 13 N -0.90 -24.17 9.57 55.43 0.53 -23.64 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.17 3.58 6.17 -39.23 -0.24 3.34 16 19 O -0.28 -5.79 7.16 -19.40 -0.14 -5.93 16 20 C 0.02 0.34 9.81 101.05 0.99 1.34 16 21 C -0.25 -4.73 8.97 -39.28 -0.35 -5.08 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 25 H 0.12 1.70 6.29 -52.49 -0.33 1.37 16 26 H 0.14 2.63 6.50 -52.48 -0.34 2.28 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 29 H 0.04 1.08 6.13 -51.93 -0.32 0.77 16 30 H 0.31 6.98 8.05 -39.29 -0.32 6.66 16 31 H 0.36 8.95 6.99 -39.29 -0.27 8.68 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 35 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 36 H 0.12 2.08 6.30 -52.48 -0.33 1.75 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -29.11 288.71 -5.31 -34.42 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -4.62 Total: 13.86 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.20 Total: -13.99 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.52 Total: -43.60 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.34 Total: -11.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.11 -5.31 -34.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084402189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.549 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds