Wall clock time and date at job start Mon Mar 30 2020 04:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 H 1.08997 * 109.46888 * 54.66389 * 3 2 1 5 5 C 1.50700 * 109.47296 * 174.66411 * 3 2 1 6 6 H 1.07997 * 120.00126 * 114.47339 * 5 3 2 7 7 C 1.37884 * 119.99951 * 294.47940 * 5 3 2 8 8 N 1.31511 * 119.99628 * 164.43190 * 7 5 3 9 9 Si 1.86797 * 120.00001 * 344.42902 * 7 5 3 10 10 H 1.48493 * 109.47137 * 270.00581 * 9 7 5 11 11 H 1.48503 * 109.47217 * 30.00228 * 9 7 5 12 12 H 1.48495 * 109.47094 * 149.99874 * 9 7 5 13 13 N 1.46498 * 109.47135 * 294.66734 * 3 2 1 14 14 C 1.33880 * 122.76311 * 120.00091 * 13 3 2 15 15 O 1.21223 * 125.39691 * 0.02562 * 14 13 3 16 16 C 1.51314 * 109.20462 * 179.97438 * 14 13 3 17 17 H 1.09004 * 117.77286 * 138.42242 * 16 14 13 18 18 C 1.54228 * 103.55711 * 359.97438 * 16 14 13 19 19 H 1.09001 * 122.28636 * 136.50073 * 18 16 14 20 20 C 1.33880 * 122.76278 * 299.70748 * 13 3 2 21 21 O 1.21227 * 125.39412 * 359.97438 * 20 13 3 22 22 C 1.52995 * 118.60677 * 297.32387 * 16 14 13 23 23 C 1.53007 * 117.44540 * 197.12387 * 22 16 14 24 24 C 1.53003 * 117.44443 * 341.83856 * 22 16 14 25 25 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47109 * 299.99979 * 1 2 3 27 27 H 1.08997 * 109.46912 * 59.99949 * 1 2 3 28 28 H 1.09002 * 109.47109 * 240.00021 * 2 1 3 29 29 H 1.08997 * 109.46912 * 120.00051 * 2 1 3 30 30 H 0.97003 * 120.00419 * 354.89445 * 8 7 5 31 31 H 1.08998 * 109.47027 * 59.99747 * 23 22 16 32 32 H 1.09006 * 109.46624 * 180.02562 * 23 22 16 33 33 H 1.08999 * 109.46621 * 299.99553 * 23 22 16 34 34 H 1.08996 * 109.47227 * 59.99852 * 24 22 16 35 35 H 1.09000 * 109.47099 * 180.02562 * 24 22 16 36 36 H 1.09007 * 109.47123 * 299.99666 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6008 1.9831 0.8383 5 6 3.5413 1.4446 0.1321 6 1 4.1544 1.8062 -0.6801 7 6 4.1321 0.9847 1.2900 8 7 5.4151 0.6964 1.3038 9 14 3.1101 0.7711 2.8389 10 1 3.1311 2.0317 3.6235 11 1 1.7103 0.4429 2.4671 12 1 3.6761 -0.3310 3.6574 13 7 1.6594 2.0951 -1.2552 14 6 0.8865 3.1874 -1.2985 15 8 0.4198 3.7560 -0.3350 16 6 0.6890 3.6005 -2.7407 17 1 -0.3066 3.9238 -3.0446 18 6 1.4907 2.5468 -3.5316 19 1 1.1036 2.0799 -4.4373 20 6 2.0604 1.6515 -2.4530 21 8 2.7669 0.6850 -2.6433 22 6 1.9138 4.0163 -3.5579 23 6 1.6672 4.7984 -4.8497 24 6 3.1788 4.3995 -2.7872 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9301 0.7361 0.4826 31 1 1.1458 5.7272 -4.6182 32 1 2.6218 5.0256 -5.3245 33 1 1.0586 4.1990 -5.5267 34 1 3.5077 3.5528 -2.1849 35 1 3.9648 4.6720 -3.4915 36 1 2.9649 5.2473 -2.1362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085404993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:11 Heat of formation + Delta-G solvation = -58.257596 kcal Electronic energy + Delta-G solvation = -19685.704934 eV Core-core repulsion = 16749.324113 eV Total energy + Delta-G solvation = -2936.380821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.53844 -39.51366 -38.86530 -37.28027 -35.12371 -33.89854 -31.02403 -29.18499 -28.50048 -26.65395 -24.78372 -23.55573 -22.85393 -21.25121 -19.85977 -19.16280 -18.25595 -17.37079 -17.25197 -16.40544 -15.70753 -15.54260 -15.30537 -15.19086 -14.87338 -14.64705 -14.47031 -14.23132 -13.90854 -13.80630 -13.59552 -13.15880 -12.81535 -12.59708 -12.47219 -12.39316 -12.08685 -11.69857 -11.49396 -11.37024 -11.29159 -11.03916 -10.88921 -10.66145 -10.41904 -8.87436 -6.51197 0.29752 1.39279 1.43523 1.54348 1.63102 1.88345 2.26094 2.38199 2.91527 3.07297 3.17981 3.21178 3.43827 3.84539 4.10315 4.14629 4.19466 4.26812 4.54082 4.55658 4.58376 4.62227 4.66221 4.78207 4.92758 4.97649 4.97955 5.01691 5.11119 5.17256 5.33398 5.38126 5.54349 5.89745 6.12479 6.36414 6.42215 6.86419 7.25387 8.49357 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.008724 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.417003 B = 3208.675925 C = 3439.543033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.237 3.763 4 H 0.050 0.950 5 C -0.603 4.603 6 H 0.019 0.981 7 C -0.011 4.011 8 N -0.926 5.926 9 Si 1.073 2.927 10 H -0.273 1.273 11 H -0.236 1.236 12 H -0.276 1.276 13 N -0.558 5.558 14 C 0.538 3.462 15 O -0.519 6.519 16 C -0.184 4.184 17 H 0.198 0.802 18 C -0.194 4.194 19 H 0.192 0.808 20 C 0.540 3.460 21 O -0.510 6.510 22 C -0.017 4.017 23 C -0.107 4.107 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.253 0.747 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.018 0.982 35 H 0.094 0.906 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 7.043 -12.113 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.135 3.865 4 H 0.068 0.932 5 C -0.641 4.641 6 H 0.037 0.963 7 C -0.210 4.210 8 N -0.560 5.560 9 Si 0.893 3.107 10 H -0.198 1.198 11 H -0.160 1.160 12 H -0.201 1.201 13 N -0.297 5.297 14 C 0.329 3.671 15 O -0.395 6.395 16 C -0.204 4.204 17 H 0.215 0.785 18 C -0.215 4.215 19 H 0.209 0.791 20 C 0.330 3.670 21 O -0.383 6.383 22 C -0.018 4.018 23 C -0.163 4.163 24 C -0.202 4.202 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.037 0.963 35 H 0.113 0.887 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.589 6.373 -10.070 17.335 hybrid contribution 0.908 -0.028 -1.161 1.474 sum -11.681 6.345 -11.231 17.402 Atomic orbital electron populations 1.21760 0.94433 1.02451 1.01264 1.22175 0.96301 0.97164 1.02002 1.19313 0.94679 0.90885 0.81583 0.93249 1.22122 0.91166 1.47377 1.03408 0.96281 1.27116 0.97367 0.91812 1.04714 1.70913 1.09022 1.45487 1.30613 0.83793 0.76256 0.78215 0.72479 1.19833 1.15981 1.20107 1.46881 1.44945 1.27732 1.10158 1.20599 0.75687 0.78625 0.92171 1.90654 1.49583 1.56377 1.42842 1.23891 1.02942 1.06148 0.87420 0.78544 1.24037 1.06002 0.90816 1.00612 0.79086 1.20490 0.78060 0.84203 0.84221 1.90679 1.34677 1.28305 1.84646 1.21911 0.91512 0.90517 0.97867 1.21492 1.04209 0.99928 0.90715 1.21702 0.96959 1.01050 1.00445 0.90681 0.92594 0.93615 0.93002 0.91586 0.93828 0.88996 0.89945 0.89057 0.96271 0.88704 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.80 71.98 0.71 -4.34 16 2 C -0.14 -6.26 4.65 30.60 0.14 -6.12 16 3 C 0.24 11.85 1.63 44.25 0.07 11.92 16 4 H 0.05 2.54 6.03 -2.39 -0.01 2.52 16 5 C -0.60 -35.87 8.29 25.60 0.21 -35.66 16 6 H 0.02 1.26 7.67 -2.91 -0.02 1.24 16 7 C -0.01 -0.64 5.33 84.66 0.45 -0.19 16 8 N -0.93 -59.67 13.70 21.45 0.29 -59.37 16 9 Si 1.07 51.01 26.19 68.60 1.80 52.81 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.24 -9.92 5.54 99.48 0.55 -9.36 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.56 -24.15 1.60 -738.14 -1.18 -25.33 16 14 C 0.54 20.36 7.14 87.99 0.63 20.99 16 15 O -0.52 -22.42 17.23 -2.85 -0.05 -22.47 16 16 C -0.18 -4.49 6.83 -10.93 -0.07 -4.57 16 17 H 0.20 3.05 8.14 -2.38 -0.02 3.03 16 18 C -0.19 -5.04 6.73 -10.95 -0.07 -5.12 16 19 H 0.19 3.39 8.14 -2.39 -0.02 3.37 16 20 C 0.54 22.06 5.58 87.99 0.49 22.55 16 21 O -0.51 -25.25 15.59 -2.87 -0.04 -25.29 16 22 C -0.02 -0.37 2.67 -52.20 -0.14 -0.51 16 23 C -0.11 -1.19 9.84 71.98 0.71 -0.48 16 24 C -0.14 -4.20 9.09 71.98 0.65 -3.55 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.55 7.76 -2.39 -0.02 1.53 16 28 H 0.05 2.52 6.51 -2.39 -0.02 2.51 16 29 H 0.07 3.03 5.07 -2.39 -0.01 3.02 16 30 H 0.25 16.73 8.73 -92.71 -0.81 15.93 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.83 7.93 -2.38 -0.02 0.81 16 33 H 0.09 0.65 7.97 -2.39 -0.02 0.63 16 34 H 0.02 0.74 6.19 -2.39 -0.01 0.73 16 35 H 0.09 2.25 7.93 -2.39 -0.02 2.23 16 36 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -79.01 292.26 5.48 -73.53 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.88 Total: 11.20 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 3.78 Total: -5.07 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -0.89 Total: -84.70 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -0.09 Total: -47.76 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 1.80 Total: 52.81 kcal Total: -79.01 5.48 -73.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085404993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.269 kcal (2) G-P(sol) polarization free energy of solvation -79.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds