Wall clock time and date at job start Mon Mar 30 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 C 1.53007 * 107.89630 * 183.42145 * 3 2 1 5 5 C 1.52994 * 109.47140 * 176.58417 * 4 3 2 6 6 C 1.51702 * 108.03945 * 66.87678 * 3 2 1 7 7 O 1.21494 * 121.34676 * 58.24721 * 6 3 2 8 8 C 1.40915 * 117.29927 * 238.22542 * 6 3 2 9 9 C 1.34435 * 121.03581 * 359.72045 * 8 6 3 10 10 N 1.36038 * 124.25278 * 0.58554 * 9 8 6 11 11 C 1.46506 * 118.73276 * 179.68246 * 10 9 8 12 12 C 1.50695 * 109.46878 * 269.73814 * 11 10 9 13 13 H 1.08004 * 120.00546 * 0.27446 * 12 11 10 14 14 C 1.37885 * 119.99721 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46793 * 120.00131 * 16 14 12 19 19 H 1.48500 * 109.47000 * 240.00224 * 16 14 12 20 20 C 1.34749 * 122.54284 * 359.40964 * 10 9 8 21 21 O 1.21240 * 120.83084 * 180.29636 * 20 10 9 22 22 H 1.08996 * 109.47139 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99738 * 1 2 3 24 24 H 1.09000 * 109.47434 * 59.99712 * 1 2 3 25 25 H 1.09001 * 109.47194 * 240.00262 * 2 1 3 26 26 H 1.09000 * 109.47434 * 120.00288 * 2 1 3 27 27 H 1.09005 * 109.47050 * 296.58370 * 4 3 2 28 28 H 1.09001 * 109.46982 * 56.57605 * 4 3 2 29 29 H 1.09001 * 109.47231 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.47111 * 299.99915 * 5 4 3 31 31 H 1.09001 * 109.47846 * 59.99717 * 5 4 3 32 32 H 1.08001 * 119.48529 * 180.02562 * 8 6 3 33 33 H 1.07994 * 117.87712 * 180.29270 * 9 8 6 34 34 H 1.08992 * 109.47424 * 149.73711 * 11 10 9 35 35 H 1.08997 * 109.46711 * 29.73311 * 11 10 9 36 36 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.4013 -0.0869 5 6 4.1115 2.8283 -0.1752 6 6 1.6625 2.0742 1.3266 7 8 2.0346 1.5996 2.3812 8 6 0.8633 3.2341 1.2859 9 6 0.4601 3.7573 0.1150 10 7 0.7624 3.2320 -1.1029 11 6 0.2526 3.8988 -2.3037 12 6 -1.0923 3.3229 -2.6652 13 1 -1.5261 2.5418 -2.0585 14 6 -1.7718 3.7976 -3.7671 15 7 -1.2460 4.7525 -4.5029 16 14 -3.4386 3.0833 -4.2157 17 1 -3.8050 2.0289 -3.2364 18 1 -4.4615 4.1595 -4.1897 19 1 -3.3744 2.4941 -5.5773 20 6 1.5172 2.1252 -1.2479 21 8 1.7720 1.6867 -2.3491 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9685 0.9136 0.8015 28 1 3.8655 0.8428 -0.9741 29 1 5.1993 2.7990 -0.2376 30 1 3.7100 3.3161 -1.0636 31 1 3.8130 3.3868 0.7120 32 1 0.5741 3.7131 2.2097 33 1 -0.1469 4.6500 0.1431 34 1 0.9479 3.7434 -3.1285 35 1 0.1505 4.9666 -2.1107 36 1 -1.7239 5.0861 -5.2783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096912196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:34 Heat of formation + Delta-G solvation = -70.382144 kcal Electronic energy + Delta-G solvation = -19523.294696 eV Core-core repulsion = 16586.388115 eV Total energy + Delta-G solvation = -2936.906581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23810 -38.45775 -36.61308 -35.04054 -33.15480 -32.12521 -31.16252 -27.83979 -27.06559 -24.88151 -23.43996 -21.87559 -21.43270 -20.82207 -17.74287 -16.94736 -16.60923 -15.97413 -15.56879 -14.77576 -14.60277 -14.41472 -13.68415 -13.49571 -13.45276 -13.17392 -12.88761 -12.70695 -12.46503 -12.36720 -11.71462 -11.54783 -11.45488 -11.40967 -11.02991 -10.87976 -10.84143 -10.75266 -10.51991 -10.40284 -9.62599 -9.41352 -9.15760 -8.68653 -7.75952 -6.30416 -4.37944 1.20607 2.91279 3.16829 3.24805 3.26682 3.36564 3.52032 4.24449 4.27292 4.53038 4.82175 4.99959 5.05975 5.17769 5.33006 5.42545 5.48431 5.52789 5.81116 5.83885 5.90434 6.00401 6.08924 6.10564 6.19856 6.28815 6.30928 6.41690 6.46438 6.68377 6.95055 7.06755 7.63339 7.81961 7.84982 7.96529 8.33801 8.65804 9.29118 10.77860 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.007312 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.140665 B = 3828.492761 C = 3980.136480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.099 4.099 3 C -0.141 4.141 4 C -0.101 4.101 5 C -0.159 4.159 6 C 0.423 3.577 7 O -0.484 6.484 8 C -0.379 4.379 9 C 0.237 3.763 10 N -0.528 5.528 11 C 0.221 3.779 12 C -0.540 4.540 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.902 3.098 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.541 3.459 21 O -0.482 6.482 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 -2.857 8.379 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.137 4.137 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.216 4.216 6 C 0.307 3.693 7 O -0.365 6.365 8 C -0.406 4.406 9 C 0.110 3.890 10 N -0.241 5.241 11 C 0.103 3.897 12 C -0.578 4.578 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.526 5.526 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.206 1.206 20 C 0.330 3.670 21 O -0.354 6.354 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.172 0.828 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.337 -3.290 7.959 10.132 hybrid contribution -1.124 -0.122 -0.451 1.217 sum 4.213 -3.412 7.508 9.261 Atomic orbital electron populations 1.21895 0.95067 1.02293 1.02669 1.21517 0.96716 0.91871 1.03612 1.21997 0.99194 0.99093 0.94228 1.21531 0.90094 0.98532 1.03727 1.21873 1.01306 0.96349 1.02121 1.20109 0.77341 0.83679 0.88202 1.90528 1.50337 1.63340 1.32256 1.21626 1.15665 1.05338 0.97934 1.21711 0.88355 0.94662 0.84311 1.45842 1.44365 1.25186 1.08731 1.19903 0.95887 0.92929 0.80933 1.21298 1.02302 1.21809 1.12396 0.91881 1.24916 0.98511 0.94695 0.95523 1.69922 1.38630 1.26946 1.17070 0.86366 0.82951 0.79094 0.78671 1.19566 1.20659 1.20635 1.20238 0.77128 0.79658 0.89987 1.90709 1.55446 1.62535 1.26720 0.92053 0.92556 0.91758 0.90242 0.90220 0.90073 0.90193 0.91909 0.92534 0.92423 0.83888 0.82756 0.92499 0.93453 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 37.16 0.35 -2.24 16 2 C -0.10 -1.55 4.62 -26.73 -0.12 -1.67 16 3 C -0.14 -2.34 0.43 -155.90 -0.07 -2.41 16 4 C -0.10 -1.49 4.62 -26.73 -0.12 -1.61 16 5 C -0.16 -2.24 9.48 37.15 0.35 -1.88 16 6 C 0.42 7.10 3.64 -32.80 -0.12 6.99 16 7 O -0.48 -8.93 17.24 5.37 0.09 -8.84 16 8 C -0.38 -5.83 9.86 -39.91 -0.39 -6.22 16 9 C 0.24 3.81 10.06 -17.03 -0.17 3.64 16 10 N -0.53 -10.31 2.58 -117.40 -0.30 -10.61 16 11 C 0.22 5.15 5.02 -5.19 -0.03 5.13 16 12 C -0.54 -13.93 9.38 -34.44 -0.32 -14.25 16 13 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 16 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.54 10.65 3.64 -10.58 -0.04 10.61 16 21 O -0.48 -11.01 16.16 5.59 0.09 -10.92 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.89 7.37 -51.93 -0.38 0.51 16 24 H 0.06 1.20 7.13 -51.93 -0.37 0.83 16 25 H 0.08 1.22 8.02 -51.93 -0.42 0.80 16 26 H 0.08 1.14 7.87 -51.93 -0.41 0.74 16 27 H 0.08 1.11 7.86 -51.93 -0.41 0.71 16 28 H 0.08 1.16 8.02 -51.93 -0.42 0.74 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.88 7.13 -51.93 -0.37 0.51 16 31 H 0.06 0.80 7.37 -51.93 -0.38 0.42 16 32 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.16 2.10 7.92 -52.49 -0.42 1.68 16 34 H 0.06 1.49 7.36 -51.93 -0.38 1.10 16 35 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -29.24 300.24 -5.84 -35.07 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.18 Total: 1.20 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.78 Total: -2.25 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.43 Total: -34.27 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.18 Total: -19.76 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.24 -5.84 -35.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096912196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.308 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds