Wall clock time and date at job start Mon Mar 30 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47256 * 2 1 4 4 C 1.50704 * 109.47352 * 240.00064 * 2 1 3 5 5 H 1.08000 * 119.99624 * 274.98736 * 4 2 1 6 6 C 1.37873 * 120.00044 * 94.98592 * 4 2 1 7 7 N 1.31514 * 119.99740 * 184.91316 * 6 4 2 8 8 Si 1.86801 * 120.00262 * 4.91634 * 6 4 2 9 9 H 1.48497 * 109.47249 * 84.82722 * 8 6 4 10 10 H 1.48494 * 109.47232 * 204.83066 * 8 6 4 11 11 H 1.48510 * 109.46792 * 324.83327 * 8 6 4 12 12 N 1.46506 * 109.47246 * 119.99792 * 2 1 3 13 13 C 1.36044 * 123.28103 * 59.96045 * 12 2 1 14 14 O 1.21226 * 126.99698 * 12.74517 * 13 12 2 15 15 C 1.49593 * 106.00485 * 192.74504 * 13 12 2 16 16 H 1.09001 * 109.96136 * 84.80738 * 15 13 12 17 17 C 1.51324 * 120.01057 * 213.76997 * 15 13 12 18 18 C 1.52080 * 107.25789 * 177.91251 * 17 15 13 19 19 C 1.52471 * 112.05602 * 303.14519 * 18 17 15 20 20 C 1.53985 * 112.11304 * 52.61690 * 19 18 17 21 21 C 1.51032 * 106.71349 * 303.65419 * 20 19 18 22 22 H 1.09000 * 109.83617 * 306.56642 * 21 20 19 23 23 C 1.36054 * 123.28349 * 240.00242 * 12 2 1 24 24 O 1.21220 * 127.01550 * 12.59061 * 23 12 2 25 25 H 1.09003 * 109.47237 * 174.95499 * 1 2 3 26 26 H 1.09001 * 109.47155 * 294.95215 * 1 2 3 27 27 H 1.09004 * 109.47225 * 54.95616 * 1 2 3 28 28 H 0.97000 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.09008 * 110.10144 * 297.83125 * 17 15 13 30 30 H 1.08997 * 110.10324 * 59.49806 * 17 15 13 31 31 H 1.09001 * 109.24435 * 182.24428 * 18 17 15 32 32 H 1.08994 * 108.50052 * 63.54669 * 18 17 15 33 33 H 1.09006 * 108.95432 * 291.94056 * 19 18 17 34 34 H 1.09003 * 108.88300 * 173.25151 * 19 18 17 35 35 H 1.08997 * 110.00392 * 184.34958 * 20 19 18 36 36 H 1.09009 * 110.00441 * 62.95390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1357 -1.7854 -1.2289 6 6 2.3600 0.0121 -2.3581 7 7 2.7057 -0.6132 -3.4622 8 14 2.3129 1.8790 -2.3177 9 1 3.5983 2.3952 -1.7825 10 1 2.1049 2.3989 -3.6931 11 1 1.1979 2.3273 -1.4452 12 7 2.0183 -0.6906 1.1962 13 6 1.7304 -1.9900 1.4779 14 8 1.2426 -2.8082 0.7281 15 6 2.1383 -2.2037 2.9012 16 1 1.3341 -1.8949 3.5691 17 6 2.6859 -3.5449 3.3384 18 6 3.0518 -3.4250 4.8097 19 6 4.0451 -2.2962 5.0624 20 6 3.5665 -0.9589 4.4676 21 6 3.3254 -1.1995 2.9962 22 1 4.2156 -1.6342 2.5417 23 6 2.8033 -0.0947 2.1342 24 8 3.0332 1.0901 2.2476 25 1 -0.3634 -1.0237 -0.0904 26 1 -0.3633 0.4335 0.9317 27 1 -0.3634 0.5901 -0.8414 28 1 2.9366 -0.1050 -4.2555 29 1 1.9324 -4.3204 3.1999 30 1 3.5833 -3.7868 2.7690 31 1 3.4882 -4.3644 5.1491 32 1 2.1420 -3.2310 5.3776 33 1 5.0029 -2.5604 4.6141 34 1 4.1785 -2.1779 6.1378 35 1 4.3338 -0.1962 4.5999 36 1 2.6409 -0.6458 4.9509 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106531417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:22 Heat of formation + Delta-G solvation = -97.528068 kcal Electronic energy + Delta-G solvation = -19421.705530 eV Core-core repulsion = 16483.621814 eV Total energy + Delta-G solvation = -2938.083717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.05994 -39.47970 -38.84288 -37.01265 -35.27323 -33.47769 -31.94556 -30.59728 -27.46754 -26.16554 -24.89958 -22.87733 -22.31107 -21.11547 -20.06894 -19.21173 -18.20597 -17.73398 -16.81510 -16.55202 -15.96798 -15.80657 -15.51571 -14.82226 -14.75818 -14.61865 -14.44108 -14.24134 -13.84088 -13.64937 -13.34827 -13.08089 -12.83325 -12.63824 -12.38381 -12.20118 -12.01346 -11.91496 -11.76004 -11.46215 -11.29634 -10.93320 -10.77211 -10.59557 -10.32771 -8.43237 -6.51794 0.60062 1.23569 1.27580 1.36258 1.65186 1.83276 2.20389 2.85053 2.94716 3.38547 3.40455 3.91273 4.13177 4.16005 4.19746 4.23759 4.35927 4.42874 4.49345 4.51992 4.55586 4.70300 4.85540 4.93579 5.03364 5.16319 5.20358 5.25792 5.26270 5.35437 5.37067 5.40967 5.57196 5.94338 6.25726 6.43141 6.59979 6.92564 7.15679 8.72831 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.007485 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.867709 B = 3739.843068 C = 4106.994079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.026 3.974 7 N -0.932 5.932 8 Si 0.931 3.069 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.244 1.244 12 N -0.586 5.586 13 C 0.532 3.468 14 O -0.505 6.505 15 C -0.119 4.119 16 H 0.141 0.859 17 C -0.096 4.096 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.123 4.123 22 H 0.122 0.878 23 C 0.532 3.468 24 O -0.519 6.519 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.272 0.728 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -2.501 20.158 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.117 3.883 3 H 0.071 0.929 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.174 4.174 7 N -0.570 5.570 8 Si 0.754 3.246 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.168 1.168 12 N -0.329 5.329 13 C 0.323 3.677 14 O -0.377 6.377 15 C -0.139 4.139 16 H 0.158 0.842 17 C -0.134 4.134 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.129 4.129 21 C -0.144 4.144 22 H 0.140 0.860 23 C 0.324 3.676 24 O -0.394 6.394 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.897 -2.284 19.581 19.734 hybrid contribution 0.008 0.811 -1.325 1.554 sum 0.906 -1.473 18.255 18.337 Atomic orbital electron populations 1.22101 0.95581 1.01516 1.00982 1.19348 0.93272 0.93156 0.82563 0.92910 1.21256 1.44510 0.94738 0.96448 0.93768 1.25806 0.93544 1.03402 0.94638 1.70018 1.46344 1.38135 1.02542 0.85988 0.80174 0.80009 0.78468 1.19608 1.19666 1.16764 1.48606 1.47638 1.13858 1.22805 1.21327 0.75678 0.80115 0.90609 1.90682 1.41690 1.47627 1.57711 1.22243 0.99173 1.00709 0.91824 0.84163 1.20964 1.01058 0.93077 0.98303 1.21248 1.00420 0.99755 0.93487 1.21593 0.99059 0.92355 1.02126 1.21251 1.03350 0.99496 0.88803 1.22178 0.99574 0.92803 0.99813 0.86038 1.21338 0.76389 0.89218 0.80704 1.90643 1.59268 1.17664 1.71836 0.93439 0.92475 0.91890 0.91901 0.90236 0.91658 0.89495 0.90555 0.91553 0.89079 0.90247 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 9.11 71.98 0.66 -5.67 16 2 C 0.22 10.81 2.42 44.24 0.11 10.91 16 3 H 0.05 2.68 4.78 -2.39 -0.01 2.67 16 4 C -0.53 -31.54 8.67 25.60 0.22 -31.32 16 5 H 0.04 2.98 6.87 -2.91 -0.02 2.96 16 6 C 0.03 1.55 5.47 84.65 0.46 2.01 16 7 N -0.93 -58.78 13.96 21.45 0.30 -58.48 16 8 Si 0.93 44.97 26.99 68.60 1.85 46.82 16 9 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.24 -10.96 6.82 99.48 0.68 -10.28 16 12 N -0.59 -25.12 2.57 -736.24 -1.89 -27.02 16 13 C 0.53 20.97 7.01 87.11 0.61 21.58 16 14 O -0.50 -24.11 15.80 -2.86 -0.05 -24.16 16 15 C -0.12 -3.01 2.41 -11.47 -0.03 -3.04 16 16 H 0.14 2.86 7.86 -2.39 -0.02 2.84 16 17 C -0.10 -1.86 5.74 29.74 0.17 -1.69 16 18 C -0.11 -1.34 5.75 30.12 0.17 -1.17 16 19 C -0.11 -1.35 5.81 30.75 0.18 -1.17 16 20 C -0.09 -1.57 5.85 30.29 0.18 -1.39 16 21 C -0.12 -3.16 2.37 -11.58 -0.03 -3.19 16 22 H 0.12 3.09 7.81 -2.39 -0.02 3.07 16 23 C 0.53 19.91 7.76 87.09 0.68 20.59 16 24 O -0.52 -22.04 17.52 -2.85 -0.05 -22.09 16 25 H 0.05 2.18 7.37 -2.39 -0.02 2.17 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 2.71 8.14 -2.38 -0.02 2.70 16 28 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.06 1.36 7.90 -2.39 -0.02 1.34 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.27 7.95 -2.38 -0.02 1.25 16 Total: -1.00 -75.31 290.21 4.58 -70.72 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.04 Total: 7.76 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 3.38 Total: 6.45 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.59 Total: -85.49 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.10 Total: -46.25 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.85 Total: 46.82 kcal Total: -75.31 4.58 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106531417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.806 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds