Wall clock time and date at job start Mon Mar 30 2020 03:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 N 1.46497 * 109.47021 * 240.00122 * 2 1 3 13 13 C 1.36539 * 123.57802 * 299.70162 * 12 2 1 14 14 O 1.21221 * 127.09879 * 16.10633 * 13 12 2 15 15 C 1.50616 * 105.87837 * 195.99983 * 13 12 2 16 16 H 1.08995 * 112.91859 * 85.29657 * 15 13 12 17 17 C 1.53005 * 118.77536 * 222.11682 * 15 13 12 18 18 C 1.55607 * 104.85187 * 136.73122 * 17 15 13 19 19 C 1.52998 * 110.15720 * 110.30494 * 18 17 15 20 20 C 1.56605 * 105.94078 * 351.18887 * 18 17 15 21 21 C 1.47588 * 101.41305 * 337.05252 * 20 18 17 22 22 H 1.09005 * 104.11127 * 304.46293 * 21 20 18 23 23 C 1.37237 * 123.57973 * 119.99669 * 12 2 1 24 24 O 1.21229 * 127.60932 * 12.92295 * 23 12 2 25 25 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 26 26 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 27 27 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 29 29 H 1.08994 * 110.36550 * 255.56890 * 17 15 13 30 30 H 1.08999 * 110.36615 * 17.78565 * 17 15 13 31 31 H 1.09003 * 110.16098 * 231.99839 * 18 17 15 32 32 H 1.09000 * 109.47167 * 60.00523 * 19 18 17 33 33 H 1.09011 * 109.46972 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.47455 * 300.00114 * 19 18 17 35 35 H 1.09000 * 111.03440 * 219.01901 * 20 18 17 36 36 H 1.08995 * 111.03626 * 95.08864 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3157 -1.1244 4.0079 9 1 3.1368 -2.2939 3.6037 10 1 3.1434 -0.1955 4.8187 11 1 1.1574 -1.5870 4.8137 12 7 2.0183 -0.6906 -1.1962 13 6 1.7386 -1.9962 -1.4814 14 8 0.8712 -2.6832 -0.9864 15 6 2.7277 -2.4077 -2.5401 16 1 3.6792 -2.7408 -2.1256 17 6 2.2386 -3.2577 -3.7146 18 6 2.9113 -2.6293 -4.9691 19 6 3.9733 -3.5779 -5.5287 20 6 3.5791 -1.3004 -4.4789 21 6 2.7915 -1.0080 -3.2655 22 1 1.7597 -0.9890 -3.6166 23 6 2.8102 -0.0956 -2.1460 24 8 3.3966 0.9622 -2.0634 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.7088 1.1613 3.4844 29 1 2.5569 -4.2929 -3.5921 30 1 1.1531 -3.2025 -3.7966 31 1 2.1609 -2.4153 -5.7303 32 1 3.5059 -4.5218 -5.8092 33 1 4.4373 -3.1270 -6.4060 34 1 4.7337 -3.7605 -4.7694 35 1 3.4651 -0.5088 -5.2195 36 1 4.6298 -1.4573 -4.2350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164348624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:13 Heat of formation + Delta-G solvation = -68.620966 kcal Electronic energy + Delta-G solvation = -19241.779538 eV Core-core repulsion = 16304.949328 eV Total energy + Delta-G solvation = -2936.830211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.33278 -39.47534 -39.02935 -37.02575 -35.41956 -33.06181 -30.70734 -30.17160 -27.46867 -26.58228 -25.58356 -23.40323 -21.76609 -20.73292 -19.88101 -19.16311 -18.29651 -17.57299 -16.71417 -16.55111 -16.31973 -15.96466 -15.35180 -14.88216 -14.83187 -14.42723 -13.99434 -13.87567 -13.58673 -13.28091 -13.08885 -13.00676 -12.88318 -12.72421 -12.43616 -12.25292 -11.81077 -11.71912 -11.69354 -11.56099 -11.40538 -11.01825 -10.89477 -10.55467 -10.25284 -8.28108 -6.44091 0.55981 1.34719 1.35699 1.46704 1.56377 1.81567 2.33733 2.56018 3.00998 3.20356 3.42813 3.90496 3.97740 4.05880 4.23261 4.36552 4.41122 4.53754 4.63659 4.69119 4.79441 4.79906 4.88071 4.93950 5.03541 5.15219 5.18454 5.29043 5.30936 5.42053 5.46645 5.61205 5.74376 5.88352 6.21200 6.41449 6.56194 6.91283 7.26619 8.77842 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.032527 B = 0.006543 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.613227 B = 4278.188449 C = 4501.793675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.258 3.742 3 H 0.025 0.975 4 C -0.544 4.544 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.274 1.274 12 N -0.595 5.595 13 C 0.534 3.466 14 O -0.502 6.502 15 C -0.126 4.126 16 H 0.141 0.859 17 C -0.098 4.098 18 C -0.082 4.082 19 C -0.142 4.142 20 C -0.072 4.072 21 C -0.155 4.155 22 H 0.101 0.899 23 C 0.558 3.442 24 O -0.519 6.519 25 H 0.076 0.924 26 H 0.026 0.974 27 H 0.041 0.959 28 H 0.269 0.731 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -8.534 -16.406 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.157 3.843 3 H 0.043 0.957 4 C -0.582 4.582 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.792 3.208 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.199 1.199 12 N -0.339 5.339 13 C 0.325 3.675 14 O -0.374 6.374 15 C -0.147 4.147 16 H 0.159 0.841 17 C -0.136 4.136 18 C -0.100 4.100 19 C -0.200 4.200 20 C -0.110 4.110 21 C -0.176 4.176 22 H 0.119 0.881 23 C 0.350 3.650 24 O -0.394 6.394 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.532 -8.213 -15.920 18.478 hybrid contribution -0.181 0.233 1.594 1.621 sum 4.350 -7.980 -14.327 16.967 Atomic orbital electron populations 1.21929 0.96629 1.00469 1.00575 1.18801 0.92307 0.92119 0.81054 0.95733 1.21396 1.32627 1.12834 0.91336 0.93313 1.25700 0.94793 0.95639 1.01936 1.69976 1.36569 1.23553 1.24854 0.85364 0.78350 0.78498 0.78603 1.19578 1.19738 1.19896 1.48942 1.46928 1.14254 1.23756 1.21588 0.83525 0.80373 0.82064 1.90628 1.34020 1.57802 1.54964 1.23664 0.99475 0.97162 0.94391 0.84100 1.22215 1.00838 0.99727 0.90857 1.22589 0.98155 0.93295 0.96007 1.21846 0.97977 0.98842 1.01286 1.21163 0.99551 0.98246 0.92015 1.21165 1.06678 0.93220 0.96552 0.88098 1.19542 0.75513 0.85276 0.84630 1.90660 1.42369 1.24529 1.81846 0.90498 0.95449 0.94005 0.92147 0.88499 0.91095 0.88519 0.91533 0.91300 0.92341 0.88708 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.20 8.97 71.98 0.65 -6.55 16 2 C 0.26 14.02 2.80 44.24 0.12 14.14 16 3 H 0.02 1.49 7.71 -2.39 -0.02 1.47 16 4 C -0.54 -31.51 8.42 25.60 0.22 -31.29 16 5 H 0.05 2.85 7.67 -2.91 -0.02 2.82 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -53.18 11.32 21.45 0.24 -52.94 16 8 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.59 -26.82 2.61 -738.35 -1.93 -28.75 16 13 C 0.53 21.45 6.58 87.35 0.57 22.03 16 14 O -0.50 -23.36 16.24 -2.85 -0.05 -23.41 16 15 C -0.13 -3.39 3.80 -9.87 -0.04 -3.43 16 16 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 17 C -0.10 -1.83 5.84 31.49 0.18 -1.64 16 18 C -0.08 -1.09 3.43 -8.64 -0.03 -1.12 16 19 C -0.14 -1.41 8.96 71.98 0.65 -0.77 16 20 C -0.07 -1.24 6.21 30.16 0.19 -1.05 16 21 C -0.16 -4.18 3.30 -13.38 -0.04 -4.22 16 22 H 0.10 2.61 6.64 -2.38 -0.02 2.59 16 23 C 0.56 22.24 7.78 85.43 0.66 22.90 16 24 O -0.52 -24.12 17.62 -2.87 -0.05 -24.17 16 25 H 0.08 4.32 6.07 -2.39 -0.01 4.31 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 2.21 6.52 -2.38 -0.02 2.19 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.10 1.51 7.75 -2.39 -0.02 1.49 16 30 H 0.07 1.43 8.07 -2.39 -0.02 1.41 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.40 7.91 -2.39 -0.02 1.38 16 Total: -1.00 -71.02 293.67 4.90 -66.13 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.07 Total: 5.64 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 3.58 Total: 10.57 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.68 Total: -81.68 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.10 Total: -47.58 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -71.02 4.90 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164348624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.492 kcal (2) G-P(sol) polarization free energy of solvation -71.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds