Wall clock time and date at job start Mon Mar 30 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.56594 * 110.16153 * 2 1 4 4 C 1.47676 * 101.74492 * 142.10055 * 3 2 1 5 5 H 1.09001 * 104.70981 * 57.65467 * 4 3 2 6 6 C 1.44485 * 138.58250 * 190.48357 * 4 3 2 7 7 O 1.21224 * 127.44084 * 339.00754 * 6 4 3 8 8 N 1.37242 * 105.09512 * 159.00455 * 6 4 3 9 9 C 1.46503 * 123.59488 * 167.19701 * 8 6 4 10 10 C 1.52994 * 109.47183 * 270.02644 * 9 8 6 11 11 C 1.50698 * 109.46767 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00240 * 359.97438 * 11 10 9 13 13 C 1.37884 * 120.00156 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99613 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00156 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46957 * 59.99909 * 15 13 11 17 17 H 1.48496 * 109.46994 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46947 * 299.99756 * 15 13 11 19 19 C 1.36678 * 112.80650 * 347.22238 * 8 6 4 20 20 O 1.21223 * 127.04044 * 164.78751 * 19 8 6 21 21 C 1.49670 * 105.91191 * 344.77044 * 19 8 6 22 22 H 1.09008 * 111.74362 * 274.66056 * 21 19 8 23 23 C 1.51953 * 121.34061 * 139.49179 * 21 19 8 24 24 H 1.09003 * 109.47721 * 60.00054 * 1 2 3 25 25 H 1.09004 * 109.46898 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47010 * 299.99324 * 1 2 3 27 27 H 1.09009 * 110.14091 * 238.28191 * 2 1 3 28 28 H 1.09002 * 110.98186 * 260.22734 * 3 2 1 29 29 H 1.09001 * 110.97767 * 23.98053 * 3 2 1 30 30 H 1.09001 * 109.46834 * 30.02885 * 9 8 6 31 31 H 1.08999 * 109.46565 * 150.02387 * 9 8 6 32 32 H 1.09001 * 109.47432 * 299.99875 * 10 9 8 33 33 H 1.08990 * 109.47458 * 60.00342 * 10 9 8 34 34 H 0.97002 * 120.00050 * 180.02562 * 14 13 11 35 35 H 1.08996 * 110.35594 * 102.98092 * 23 21 19 36 36 H 1.08997 * 110.43958 * 340.75023 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4700 0.0000 4 6 3.2443 1.3589 0.8881 5 1 3.8728 0.5999 0.4223 6 6 4.1813 2.2301 1.5595 7 8 4.4466 3.3802 1.2829 8 7 4.7057 1.4741 2.5778 9 6 5.8891 1.8625 3.3492 10 6 7.1440 1.3088 2.6715 11 6 8.3612 1.7079 3.4654 12 1 8.2507 2.2978 4.3633 13 6 9.6159 1.3199 3.0454 14 7 9.7504 0.6020 1.9518 15 14 11.1246 1.8139 4.0300 16 1 11.0203 1.2633 5.4051 17 1 12.3425 1.2756 3.3728 18 1 11.2101 3.2950 4.0948 19 6 4.0065 0.3200 2.7951 20 8 4.3693 -0.6443 3.4338 21 6 2.7011 0.4909 2.0832 22 1 1.9698 1.0127 2.7006 23 6 2.0684 -0.6522 1.3074 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9053 -0.5381 -0.8706 28 1 2.3664 1.7768 -1.0030 29 1 1.3313 2.1568 0.4136 30 1 5.9512 2.9497 3.3964 31 1 5.8132 1.4587 4.3588 32 1 7.0819 0.2216 2.6242 33 1 7.2199 1.7126 1.6619 34 1 10.6331 0.3287 1.6565 35 1 1.2492 -1.0899 1.8778 36 1 2.8141 -1.4118 1.0728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164351165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:06 Heat of formation + Delta-G solvation = -57.732202 kcal Electronic energy + Delta-G solvation = -18665.661739 eV Core-core repulsion = 15729.303700 eV Total energy + Delta-G solvation = -2936.358038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.22066 -38.19200 -38.02569 -35.48225 -33.56844 -31.97803 -29.70185 -29.40819 -26.42177 -24.53520 -24.18377 -21.60175 -20.76542 -19.93196 -18.74601 -17.74100 -16.75292 -16.01593 -15.45879 -15.39222 -15.01330 -14.48621 -14.22842 -13.94977 -13.76228 -13.09354 -12.96223 -12.70154 -12.45402 -12.29799 -12.13257 -11.53221 -11.19742 -11.08901 -10.95838 -10.87385 -10.81532 -10.76028 -10.19609 -10.14848 -9.83596 -9.73120 -9.24774 -8.79339 -8.39838 -6.04743 -4.08776 1.79664 2.74662 2.90559 3.33175 3.36905 3.39781 3.47366 4.13863 4.31696 4.43563 4.69235 4.79245 4.85541 5.00056 5.10177 5.18403 5.31701 5.32101 5.46788 5.51734 5.67948 5.72096 5.83380 5.86860 5.88891 5.92252 6.09188 6.12302 6.30690 6.66102 7.09553 7.55815 7.58906 7.68653 7.90585 8.10348 8.30759 8.96181 9.55392 11.06911 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.039999 B = 0.004988 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.847188 B = 5612.107165 C = 5807.698957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.075 4.075 4 C -0.165 4.165 5 H 0.100 0.900 6 C 0.569 3.431 7 O -0.473 6.473 8 N -0.592 5.592 9 C 0.106 3.894 10 C 0.012 3.988 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.539 3.461 20 O -0.466 6.466 21 C -0.139 4.139 22 H 0.124 0.876 23 C -0.101 4.101 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.081 0.919 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.224 -1.058 -3.907 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.113 4.113 4 C -0.186 4.186 5 H 0.118 0.882 6 C 0.359 3.641 7 O -0.343 6.343 8 N -0.338 5.338 9 C -0.013 4.013 10 C -0.026 4.026 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.327 3.673 20 O -0.335 6.335 21 C -0.160 4.160 22 H 0.142 0.858 23 C -0.139 4.139 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.676 -1.069 -3.782 19.085 hybrid contribution 1.167 0.147 0.534 1.292 sum -17.509 -0.922 -3.247 17.832 Atomic orbital electron populations 1.21840 0.94243 1.01927 1.02085 1.22660 0.96232 0.94746 0.97757 1.20988 0.94316 0.96916 0.99076 1.21083 0.99654 0.99511 0.98345 0.88169 1.18720 0.80583 0.85431 0.79383 1.90729 1.62414 1.15250 1.65952 1.48657 1.29824 1.20804 1.34522 1.22183 0.83495 1.00854 0.94793 1.19404 0.89958 0.96991 0.96236 1.20984 0.90881 1.34264 1.10126 0.92330 1.25001 0.99196 0.94896 0.95098 1.69961 1.23594 1.36779 1.22773 0.86561 0.81844 0.78909 0.80147 1.20098 1.21199 1.20084 1.20605 0.86035 0.81255 0.79379 1.90747 1.74649 1.29904 1.38229 1.22981 0.96271 1.00011 0.96743 0.85775 1.21914 1.00787 0.96140 0.95108 0.92333 0.92390 0.92350 0.89936 0.89990 0.90290 0.90021 0.90424 0.95807 0.96267 0.92783 0.90065 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.97 37.16 0.33 -0.53 16 2 C -0.10 -0.73 3.46 -87.24 -0.30 -1.03 16 3 C -0.07 -0.67 6.20 -27.37 -0.17 -0.84 16 4 C -0.16 -2.08 3.24 -94.78 -0.31 -2.38 16 5 H 0.10 1.33 6.87 -51.93 -0.36 0.97 16 6 C 0.57 9.80 7.77 -12.67 -0.10 9.71 16 7 O -0.47 -9.52 17.77 5.61 0.10 -9.42 16 8 N -0.59 -11.04 2.73 -116.82 -0.32 -11.36 16 9 C 0.11 2.30 5.74 -4.04 -0.02 2.28 16 10 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 11 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 C 0.54 9.16 7.52 -10.61 -0.08 9.08 16 20 O -0.47 -9.48 17.89 5.61 0.10 -9.38 16 21 C -0.14 -1.62 3.49 -90.42 -0.32 -1.94 16 22 H 0.12 1.20 8.14 -51.92 -0.42 0.77 16 23 C -0.10 -0.94 5.95 -25.82 -0.15 -1.09 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 30 H 0.08 1.74 7.95 -51.93 -0.41 1.33 16 31 H 0.08 1.64 8.11 -51.93 -0.42 1.22 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 0.64 7.75 -51.93 -0.40 0.23 16 36 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -33.50 302.64 -6.87 -40.36 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -5.35 Total: -4.77 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.67 Total: -0.32 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.42 Total: -37.95 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.20 Total: -18.80 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.50 -6.87 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164351165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.369 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds