Wall clock time and date at job start Mon Mar 30 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.56589 * 110.16058 * 2 1 4 4 C 1.47539 * 101.54628 * 218.01539 * 3 2 1 5 5 H 1.09002 * 104.48244 * 304.10472 * 4 3 2 6 6 C 1.44409 * 139.16424 * 170.24788 * 4 3 2 7 7 O 1.21227 * 127.55743 * 20.17759 * 6 4 3 8 8 N 1.36070 * 105.49767 * 199.75308 * 6 4 3 9 9 C 1.46500 * 123.75842 * 192.95621 * 8 6 4 10 10 C 1.53000 * 109.47184 * 270.22741 * 9 8 6 11 11 C 1.50697 * 109.47022 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00605 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99833 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00208 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99905 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46973 * 59.99863 * 15 13 11 17 17 H 1.48496 * 109.46850 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46940 * 300.00080 * 15 13 11 19 19 C 1.36573 * 112.66519 * 13.16052 * 8 6 4 20 20 O 1.21219 * 127.05998 * 195.56699 * 19 8 6 21 21 C 1.50418 * 105.87762 * 15.54832 * 19 8 6 22 22 H 1.08992 * 113.26540 * 85.24104 * 21 19 8 23 23 C 1.52673 * 119.87575 * 221.52092 * 21 19 8 24 24 H 1.09004 * 109.46630 * 59.99868 * 1 2 3 25 25 H 1.08994 * 109.47485 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47029 * 300.00367 * 1 2 3 27 27 H 1.09001 * 110.18611 * 121.74082 * 2 1 3 28 28 H 1.08997 * 111.01427 * 99.95020 * 3 2 1 29 29 H 1.09002 * 111.01093 * 336.07977 * 3 2 1 30 30 H 1.09008 * 109.46830 * 30.22283 * 9 8 6 31 31 H 1.08997 * 109.47436 * 150.22517 * 9 8 6 32 32 H 1.08998 * 109.46934 * 299.99598 * 10 9 8 33 33 H 1.09002 * 109.46911 * 60.00010 * 10 9 8 34 34 H 0.96992 * 120.00147 * 179.97438 * 14 13 11 35 35 H 1.09005 * 110.35166 * 18.13664 * 23 21 19 36 36 H 1.08998 * 110.34941 * 255.86495 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4699 0.0000 4 6 3.2405 1.3547 -0.8903 5 1 3.8499 0.5714 -0.4392 6 6 4.1916 2.2097 -1.5608 7 8 4.4704 3.3585 -1.2919 8 7 4.7216 1.4517 -2.5588 9 6 5.9182 1.8252 -3.3170 10 6 5.5104 2.6495 -4.5398 11 6 6.7412 3.0343 -5.3194 12 1 7.7168 2.7225 -4.9770 13 6 6.6219 3.7844 -6.4702 14 7 5.4338 4.1637 -6.8877 15 14 8.1476 4.2608 -7.4370 16 1 8.8557 3.0332 -7.8808 17 1 7.7517 5.0599 -8.6244 18 1 9.0482 5.0673 -6.5748 19 6 4.0141 0.3048 -2.7809 20 8 4.3784 -0.6692 -3.4038 21 6 2.6903 0.4983 -2.0935 22 1 1.9589 1.0233 -2.7077 23 6 2.0663 -0.6521 -1.3072 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9061 -0.5382 0.8700 28 1 2.3694 1.7763 1.0022 29 1 1.3312 2.1574 -0.4126 30 1 6.5794 2.4170 -2.6840 31 1 6.4377 0.9242 -3.6431 32 1 4.8492 2.0577 -5.1728 33 1 4.9908 3.5506 -4.2137 34 1 5.3499 4.6917 -7.6969 35 1 2.8198 -1.4045 -1.0740 36 1 1.2474 -1.0972 -1.8724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164351433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:11 Heat of formation + Delta-G solvation = -54.811962 kcal Electronic energy + Delta-G solvation = -18657.018670 eV Core-core repulsion = 15720.787262 eV Total energy + Delta-G solvation = -2936.231407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30441 -38.19565 -38.06055 -35.49617 -33.57740 -31.98352 -29.70320 -29.38216 -26.42316 -24.52009 -24.19657 -21.50441 -20.98904 -19.87480 -18.71837 -17.76113 -16.74672 -16.07209 -15.48091 -15.38663 -14.99240 -14.47247 -14.19856 -13.99528 -13.74659 -13.08670 -12.98032 -12.69699 -12.47357 -12.27288 -12.13133 -11.55736 -11.17860 -11.10665 -10.96009 -10.88839 -10.83243 -10.76189 -10.19644 -10.15933 -9.81053 -9.74144 -9.24571 -8.81818 -8.39825 -6.04724 -4.08788 1.79092 2.70147 2.95533 3.33233 3.36994 3.39896 3.47531 4.12741 4.30107 4.43612 4.67968 4.77629 4.84537 4.95615 5.12847 5.17047 5.31533 5.31718 5.46182 5.50892 5.65691 5.72667 5.83281 5.86362 5.87535 5.90770 6.07470 6.11627 6.30399 6.65464 7.10430 7.55822 7.58837 7.68552 7.90652 8.10306 8.30647 8.96130 9.55385 11.06921 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.040565 B = 0.004945 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.078910 B = 5661.418257 C = 5855.784363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.076 4.076 4 C -0.162 4.162 5 H 0.094 0.906 6 C 0.564 3.436 7 O -0.469 6.469 8 N -0.589 5.589 9 C 0.105 3.895 10 C 0.013 3.987 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.541 3.459 20 O -0.471 6.471 21 C -0.140 4.140 22 H 0.131 0.869 23 C -0.102 4.102 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.019 0.981 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 -8.745 14.651 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.113 4.113 4 C -0.184 4.184 5 H 0.112 0.888 6 C 0.353 3.647 7 O -0.340 6.340 8 N -0.334 5.334 9 C -0.014 4.014 10 C -0.025 4.025 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.330 3.670 20 O -0.341 6.341 21 C -0.161 4.161 22 H 0.149 0.851 23 C -0.140 4.140 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.477 -8.581 14.284 19.169 hybrid contribution 0.939 0.311 -0.783 1.261 sum -8.538 -8.270 13.501 17.988 Atomic orbital electron populations 1.21849 0.94186 1.01934 1.02245 1.22644 0.96384 0.94735 0.97589 1.20972 0.94507 0.96970 0.98899 1.21085 0.99500 0.99410 0.98372 0.88776 1.18463 0.81210 0.85460 0.79589 1.90752 1.62113 1.14742 1.66401 1.48341 1.29525 1.20692 1.34855 1.22203 0.83655 1.00725 0.94775 1.19402 0.97738 0.94879 0.90486 1.20978 0.92685 1.33966 1.08652 0.92340 1.24997 0.96146 0.95688 0.97335 1.69956 1.22430 1.37126 1.23560 0.86564 0.82961 0.78611 0.79339 1.20111 1.21191 1.20081 1.20779 0.86433 0.81292 0.78476 1.90718 1.75324 1.29938 1.38163 1.23408 0.96250 0.99709 0.96728 0.85133 1.22068 1.00905 0.95994 0.95059 0.92162 0.92407 0.92341 0.90093 0.90060 0.90064 0.90348 0.90067 0.96272 0.95698 0.92771 0.90588 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.96 37.16 0.33 -0.56 16 2 C -0.09 -0.69 3.44 -87.29 -0.30 -0.99 16 3 C -0.08 -0.67 6.21 -27.43 -0.17 -0.84 16 4 C -0.16 -1.98 3.33 -94.74 -0.32 -2.29 16 5 H 0.09 1.05 6.68 -51.93 -0.35 0.71 16 6 C 0.56 9.72 7.70 -13.25 -0.10 9.62 16 7 O -0.47 -9.69 17.86 5.60 0.10 -9.59 16 8 N -0.59 -11.00 2.69 -116.93 -0.32 -11.31 16 9 C 0.11 2.30 5.73 -4.04 -0.02 2.27 16 10 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 11 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 15 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.54 9.24 7.44 -10.30 -0.08 9.16 16 20 O -0.47 -9.35 17.73 5.61 0.10 -9.25 16 21 C -0.14 -1.72 3.68 -89.56 -0.33 -2.05 16 22 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 23 C -0.10 -0.92 5.87 -25.50 -0.15 -1.07 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 30 H 0.08 1.66 8.10 -51.92 -0.42 1.24 16 31 H 0.08 1.74 7.92 -51.93 -0.41 1.32 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.08 0.67 7.75 -51.93 -0.40 0.26 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -33.38 302.30 -6.87 -40.25 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.34 Total: -4.76 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.69 Total: -0.27 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.42 Total: -37.81 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.20 Total: -18.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.38 -6.87 -40.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164351433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.560 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds