Wall clock time and date at job start Mon Mar 30 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99766 * 2 1 4 4 C 1.53001 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47013 * 174.99846 * 4 3 2 6 6 C 1.52999 * 109.47057 * 54.99706 * 4 3 2 7 7 O 1.42900 * 109.46679 * 294.99345 * 4 3 2 8 8 C 1.35963 * 116.99874 * 203.27328 * 7 4 3 9 9 C 1.39418 * 119.81888 * 355.32159 * 8 7 4 10 10 C 1.38101 * 120.56976 * 179.97438 * 9 8 7 11 11 C 1.38711 * 120.19855 * 359.75874 * 10 9 8 12 12 N 1.38855 * 120.18149 * 180.25764 * 11 10 9 13 13 C 1.41542 * 119.64022 * 0.51364 * 11 10 9 14 14 C 1.41022 * 120.27863 * 179.74245 * 13 11 10 15 15 H 1.08003 * 120.00007 * 330.11726 * 14 13 11 16 16 C 1.39902 * 119.99997 * 150.39464 * 14 13 11 17 17 N 1.30892 * 120.00071 * 348.96226 * 16 14 13 18 18 Si 1.86803 * 120.00102 * 168.96525 * 16 14 13 19 19 H 1.48500 * 109.47251 * 59.99848 * 18 16 14 20 20 H 1.48501 * 109.47131 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47094 * 299.99842 * 18 16 14 22 22 C 1.37834 * 119.82246 * 175.34042 * 8 7 4 23 23 H 1.08997 * 109.47712 * 300.00454 * 1 2 3 24 24 H 1.09007 * 109.46982 * 60.00771 * 1 2 3 25 25 H 1.09003 * 109.46886 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47303 * 59.99325 * 3 2 1 27 27 H 1.09005 * 109.46844 * 299.99580 * 3 2 1 28 28 H 1.09001 * 109.47316 * 299.99446 * 6 4 3 29 29 H 1.08998 * 109.47225 * 60.00193 * 6 4 3 30 30 H 1.09002 * 109.46879 * 179.97438 * 6 4 3 31 31 H 1.07999 * 119.72067 * 0.02562 * 9 8 7 32 32 H 1.08006 * 119.89641 * 180.02562 * 10 9 8 33 33 H 0.96997 * 120.00100 * 180.25733 * 12 11 10 34 34 H 0.96998 * 120.00150 * 0.25905 * 12 11 10 35 35 H 0.97005 * 119.99868 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.10636 * 359.95655 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 6 3.9790 0.3194 -1.1806 7 8 3.9647 0.5799 1.2221 8 6 5.2428 0.8244 1.6161 9 6 6.0960 1.5530 0.7885 10 6 7.3970 1.8109 1.1735 11 6 7.8677 1.3501 2.3942 12 7 9.1742 1.6142 2.7834 13 6 7.0107 0.6045 3.2387 14 6 7.4769 0.1249 4.4802 15 1 8.5213 -0.1193 4.6071 16 6 6.5855 -0.0402 5.5457 17 7 5.3734 0.4474 5.4665 18 14 7.1251 -0.9565 7.0816 19 1 8.2871 -0.2606 7.6905 20 1 6.0047 -0.9930 8.0555 21 1 7.5127 -2.3437 6.7199 22 6 5.6881 0.3504 2.8314 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.5360 -0.6725 -1.0910 29 1 3.6515 0.7808 -2.1122 30 1 5.0656 0.2337 -1.1804 31 1 5.7363 1.9196 -0.1616 32 1 8.0485 2.3768 0.5241 33 1 9.5018 1.2875 3.6359 34 1 9.7593 2.1254 2.2027 35 1 4.7554 0.3332 6.2055 36 1 5.0235 -0.2132 3.4695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166393707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:06 Heat of formation + Delta-G solvation = -86.561878 kcal Electronic energy + Delta-G solvation = -18426.866264 eV Core-core repulsion = 15489.258077 eV Total energy + Delta-G solvation = -2937.608187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69487 -39.09687 -38.10118 -35.38605 -34.29458 -32.92870 -31.36249 -28.58859 -28.29884 -26.85525 -26.50919 -23.47498 -22.59285 -21.34354 -19.39015 -18.13906 -17.70011 -17.25417 -17.15744 -16.56530 -16.48341 -16.17967 -15.54635 -15.17879 -14.70889 -14.33082 -14.04386 -13.70635 -13.58522 -13.18295 -13.08690 -12.83835 -12.81730 -12.67766 -12.38523 -12.13517 -12.10077 -11.75415 -11.63103 -11.12852 -10.97226 -10.60034 -10.22431 -9.25115 -8.51225 -7.74652 -6.10595 1.03164 1.37186 1.40662 1.51958 1.56001 2.26301 2.68842 2.87387 2.90809 3.68252 3.81467 3.90522 4.09469 4.26509 4.40163 4.46067 4.53778 4.56046 4.66191 4.68806 4.80456 4.85916 4.98326 5.15981 5.17835 5.34757 5.38779 5.67461 5.79861 5.92502 6.08624 6.23834 6.28238 6.47404 6.92256 7.01307 7.11884 7.35546 7.59724 8.50089 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.006361 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.347594 B = 4400.604965 C = 5527.013396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.070 3.930 4 C 0.075 3.925 5 H 0.088 0.912 6 C -0.163 4.163 7 O -0.338 6.338 8 C 0.081 3.919 9 C -0.261 4.261 10 C -0.162 4.162 11 C 0.090 3.910 12 N -0.873 5.873 13 C 0.057 3.943 14 C -0.491 4.491 15 H 0.081 0.919 16 C 0.027 3.973 17 N -0.840 5.840 18 Si 0.981 3.019 19 H -0.255 1.255 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.195 4.195 23 H 0.041 0.959 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.393 0.607 34 H 0.394 0.606 35 H 0.280 0.720 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 2.455 -8.926 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.105 0.895 6 C -0.220 4.220 7 O -0.253 6.253 8 C 0.036 3.964 9 C -0.281 4.281 10 C -0.186 4.186 11 C -0.012 4.012 12 N -0.417 5.417 13 C 0.053 3.947 14 C -0.522 4.522 15 H 0.099 0.901 16 C -0.185 4.185 17 N -0.467 5.467 18 Si 0.803 3.197 19 H -0.180 1.180 20 H -0.201 1.201 21 H -0.189 1.189 22 C -0.216 4.216 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.221 0.779 34 H 0.222 0.778 35 H 0.090 0.910 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.557 2.189 -8.717 10.077 hybrid contribution 0.167 0.002 0.895 0.911 sum -4.390 2.191 -7.822 9.233 Atomic orbital electron populations 1.22925 0.79676 1.03660 1.00859 1.87948 1.21325 1.28139 1.95545 1.22703 0.90830 0.85233 1.01906 1.22618 0.93911 0.97520 0.84086 0.89458 1.22162 1.01413 1.00822 0.97614 1.86105 1.27291 1.70930 1.41003 1.18846 0.83571 0.99463 0.94519 1.20555 0.95132 1.10931 1.01526 1.20137 0.96249 1.06241 0.95993 1.18115 0.87702 0.99978 0.95428 1.41710 1.10138 1.65312 1.24490 1.17318 0.91153 0.92953 0.93302 1.19393 0.96298 1.41115 0.95433 0.90053 1.26699 0.94327 0.94235 1.03255 1.69957 1.07018 1.36480 1.33284 0.85266 0.78720 0.79191 0.76518 1.17951 1.20136 1.18870 1.20299 0.98065 1.08370 0.94888 0.94057 0.91965 0.88934 0.93347 0.88124 0.92660 0.88811 0.92877 0.85560 0.85915 0.77888 0.77779 0.91000 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.79 9.79 -144.34 -1.41 -14.21 16 3 C 0.07 1.97 5.81 71.98 0.42 2.39 16 4 C 0.07 2.56 2.64 30.59 0.08 2.64 16 5 H 0.09 2.77 6.37 -2.39 -0.02 2.75 16 6 C -0.16 -4.91 8.93 71.98 0.64 -4.27 16 7 O -0.34 -15.93 9.76 -88.49 -0.86 -16.79 16 8 C 0.08 4.13 6.57 22.46 0.15 4.27 16 9 C -0.26 -11.61 8.17 22.52 0.18 -11.42 16 10 C -0.16 -7.11 9.87 22.35 0.22 -6.89 16 11 C 0.09 4.32 6.79 38.96 0.26 4.58 16 12 N -0.87 -34.11 8.98 -50.34 -0.45 -34.56 16 13 C 0.06 3.19 5.55 -21.18 -0.12 3.07 16 14 C -0.49 -26.69 8.41 23.36 0.20 -26.49 16 15 H 0.08 4.09 6.82 -2.91 -0.02 4.07 16 16 C 0.03 1.43 5.24 85.24 0.45 1.87 16 17 N -0.84 -47.31 10.89 21.82 0.24 -47.07 16 18 Si 0.98 40.07 29.57 68.60 2.03 42.09 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 C -0.19 -11.23 8.57 22.78 0.20 -11.03 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.72 6.76 -2.39 -0.02 1.70 16 31 H 0.13 4.71 5.34 -2.91 -0.02 4.70 16 32 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.39 15.19 7.12 -92.71 -0.66 14.53 16 34 H 0.39 12.39 8.83 -92.71 -0.82 11.57 16 35 H 0.28 14.56 8.30 -92.70 -0.77 13.80 16 36 H 0.09 5.90 6.27 -2.91 -0.02 5.88 16 Total: -1.00 -68.13 298.16 3.09 -65.03 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: -0.37 Total: 45.00 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 3.93 Total: -39.49 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -0.21 Total: -81.64 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -2.28 Total: -31.00 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Total: -68.13 3.09 -65.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166393707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.528 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds