Wall clock time and date at job start Mon Mar 30 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35977 * 117.00226 * 2 1 4 4 C 1.38722 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.38105 * 120.00307 * 179.97438 * 4 3 2 6 6 C 1.38726 * 119.99566 * 359.78958 * 5 4 3 7 7 O 1.35986 * 119.99307 * 180.25146 * 6 5 4 8 8 C 1.42893 * 117.00589 * 0.20879 * 7 6 5 9 9 C 1.38670 * 120.00520 * 0.46421 * 6 5 4 10 10 C 1.50693 * 120.00334 * 179.79628 * 9 6 5 11 11 H 1.09000 * 109.47153 * 324.71847 * 10 9 6 12 12 C 1.52999 * 109.47410 * 84.71987 * 10 9 6 13 13 N 1.46507 * 109.47158 * 204.72176 * 10 9 6 14 14 C 1.36936 * 119.99957 * 154.99669 * 13 10 9 15 15 H 1.08001 * 119.99938 * 359.97438 * 14 13 10 16 16 C 1.38817 * 119.99709 * 180.02562 * 14 13 10 17 17 N 1.31617 * 119.99464 * 180.27733 * 16 14 13 18 18 Si 1.86800 * 119.99902 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 90.00170 * 18 16 14 20 20 H 1.48499 * 109.47026 * 210.00018 * 18 16 14 21 21 H 1.48496 * 109.47474 * 330.00054 * 18 16 14 22 22 C 1.38155 * 119.99619 * 359.51411 * 9 6 5 23 23 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46874 * 300.00034 * 1 2 3 25 25 H 1.08999 * 109.46883 * 60.00216 * 1 2 3 26 26 H 1.08003 * 119.99350 * 359.97227 * 4 3 2 27 27 H 1.08000 * 120.00325 * 180.02562 * 5 4 3 28 28 H 1.08994 * 109.47409 * 300.00125 * 8 7 6 29 29 H 1.09001 * 109.46946 * 60.00440 * 8 7 6 30 30 H 1.08999 * 109.47236 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.46965 * 60.00355 * 12 10 9 32 32 H 1.09003 * 109.46770 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.46873 * 299.99870 * 12 10 9 34 34 H 0.97000 * 119.99595 * 334.99869 * 13 10 9 35 35 H 0.97004 * 119.99499 * 179.72646 * 17 16 14 36 36 H 1.07997 * 120.00226 * 180.28281 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3033 3.6780 0.0055 7 8 3.9206 4.8897 0.0112 8 6 3.0808 6.0457 0.0169 9 6 4.0586 2.5150 -0.0004 10 6 5.5634 2.5938 -0.0002 11 1 5.8823 3.4535 -0.5896 12 6 6.0661 2.7460 1.4368 13 7 6.1166 1.3693 -0.5840 14 6 7.3591 1.3858 -1.1596 15 1 7.9309 2.3017 -1.1835 16 6 7.8830 0.2256 -1.7132 17 7 9.0794 0.2403 -2.2615 18 14 6.8934 -1.3582 -1.6724 19 1 6.0551 -1.4497 -2.8947 20 1 7.8185 -2.5186 -1.6187 21 1 6.0201 -1.3655 -0.4714 22 6 3.4313 1.2841 -0.0005 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2124 2.3184 0.0005 27 1 1.3298 4.5113 0.0019 28 1 2.4513 6.0420 -0.8729 29 1 2.4518 6.0334 0.9071 30 1 3.6986 6.9437 0.0216 31 1 5.7473 1.8863 2.0262 32 1 7.1546 2.8034 1.4368 33 1 5.6545 3.6571 1.8711 34 1 5.6028 0.5468 -0.5628 35 1 9.4471 -0.5714 -2.6448 36 1 4.0194 0.3783 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192505163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:42 Heat of formation + Delta-G solvation = -27.869585 kcal Electronic energy + Delta-G solvation = -18648.690076 eV Core-core repulsion = 15713.626978 eV Total energy + Delta-G solvation = -2935.063098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40418 -38.84650 -36.83373 -35.07119 -32.20276 -30.31604 -29.83027 -28.31608 -27.31756 -26.80577 -23.90297 -22.77695 -21.56356 -19.87565 -18.50162 -17.48641 -17.07707 -16.51985 -15.77693 -15.45230 -14.74874 -14.50244 -14.38074 -14.13629 -13.50274 -13.07244 -12.75893 -12.69854 -12.36083 -12.21074 -12.12659 -11.69445 -11.56633 -11.42383 -11.00057 -10.83427 -10.65043 -10.31382 -10.20855 -9.97542 -9.49211 -8.95883 -8.59917 -7.54414 -7.20663 -5.70205 -3.05299 1.43939 1.64946 3.33843 3.43818 3.47519 3.50930 3.51564 3.89925 4.65866 4.77759 4.84331 5.02221 5.08240 5.10091 5.16363 5.19570 5.37997 5.45927 5.52524 5.59086 5.64209 5.67952 5.96677 6.05373 6.28753 6.37057 6.38915 6.45234 6.63575 6.74757 6.96870 7.08125 7.41451 7.64567 8.06941 8.48790 9.26819 9.99463 10.19269 11.48169 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.008072 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.753988 B = 3468.013574 C = 4755.514735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.092 3.908 4 C -0.182 4.182 5 C -0.171 4.171 6 C 0.094 3.906 7 O -0.308 6.308 8 C 0.029 3.971 9 C -0.057 4.057 10 C 0.220 3.780 11 H 0.074 0.926 12 C -0.155 4.155 13 N -0.749 5.749 14 C -0.239 4.239 15 H 0.092 0.908 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.107 4.107 23 H 0.096 0.904 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 7.125 6.422 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.048 3.952 4 C -0.201 4.201 5 C -0.190 4.190 6 C 0.049 3.951 7 O -0.221 6.221 8 C -0.067 4.067 9 C -0.059 4.059 10 C 0.111 3.889 11 H 0.092 0.908 12 C -0.215 4.215 13 N -0.394 5.394 14 C -0.369 4.369 15 H 0.110 0.890 16 C -0.191 4.191 17 N -0.582 5.582 18 Si 0.709 3.291 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.126 4.126 23 H 0.114 0.886 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.653 7.039 6.320 20.915 hybrid contribution -1.259 -0.989 -0.063 1.602 sum -19.912 6.050 6.257 21.731 Atomic orbital electron populations 1.22978 0.79098 1.03547 1.00943 1.86103 1.20749 1.26948 1.89386 1.18866 0.92122 0.84041 1.00209 1.20854 0.99439 0.91704 1.08129 1.20890 0.93081 0.98073 1.06910 1.18655 0.90474 0.85252 1.00722 1.86152 1.34920 1.11914 1.89133 1.22985 0.95878 0.87066 1.00739 1.19630 0.97483 0.89331 0.99441 1.19006 0.84891 0.91295 0.93705 0.90831 1.22313 1.01876 0.99773 0.97556 1.42968 1.19167 1.06668 1.70563 1.19082 0.91472 0.97508 1.28820 0.88988 1.24632 0.96515 0.97359 1.00556 1.69699 1.16418 1.27791 1.44341 0.86642 0.79708 0.84808 0.77965 1.20971 1.21657 1.20269 1.20138 0.90942 0.98246 1.03290 0.88568 0.93007 0.92958 0.85682 0.85514 0.93083 0.93157 0.88462 0.93625 0.91897 0.93768 0.80378 0.93125 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.79 10.50 -19.67 -0.21 -5.00 16 3 C 0.09 1.49 6.69 -39.24 -0.26 1.22 16 4 C -0.18 -2.47 9.03 -39.45 -0.36 -2.82 16 5 C -0.17 -2.31 9.03 -39.45 -0.36 -2.67 16 6 C 0.09 1.53 6.66 -39.24 -0.26 1.27 16 7 O -0.31 -4.66 9.63 -19.70 -0.19 -4.85 16 8 C 0.03 0.29 9.81 101.05 0.99 1.28 16 9 C -0.06 -1.07 5.07 -104.50 -0.53 -1.60 16 10 C 0.22 4.65 2.82 -69.08 -0.19 4.45 16 11 H 0.07 1.63 7.63 -51.93 -0.40 1.24 16 12 C -0.16 -2.98 9.47 37.16 0.35 -2.62 16 13 N -0.75 -18.66 4.84 -54.55 -0.26 -18.92 16 14 C -0.24 -6.93 10.41 -15.06 -0.16 -7.09 16 15 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 16 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 17 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 18 Si 0.88 22.85 27.74 -169.99 -4.71 18.14 16 19 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 22 C -0.11 -1.99 9.17 -39.45 -0.36 -2.35 16 23 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.13 1.30 6.29 -52.48 -0.33 0.97 16 27 H 0.13 1.32 6.29 -52.49 -0.33 0.99 16 28 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 29 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.36 8.85 3.26 -40.82 -0.13 8.72 16 35 H 0.26 7.88 8.31 -40.82 -0.34 7.55 16 36 H 0.14 2.72 6.07 -52.49 -0.32 2.40 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -33.56 298.16 -5.15 -38.72 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.80 Total: 6.15 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.24 Total: -9.61 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.51 Total: -48.03 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.40 Total: -9.85 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.56 -5.15 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192505163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.846 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds