Wall clock time and date at job start Mon Mar 30 2020 04:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35977 * 117.00226 * 2 1 4 4 C 1.38722 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.38105 * 120.00307 * 179.97438 * 4 3 2 6 6 C 1.38726 * 119.99566 * 359.78958 * 5 4 3 7 7 O 1.35986 * 119.99307 * 180.25146 * 6 5 4 8 8 C 1.42893 * 117.00589 * 0.20879 * 7 6 5 9 9 C 1.38670 * 120.00520 * 0.46421 * 6 5 4 10 10 C 1.50693 * 120.00334 * 179.79628 * 9 6 5 11 11 H 1.09000 * 109.47153 * 324.71847 * 10 9 6 12 12 C 1.52999 * 109.47410 * 84.71987 * 10 9 6 13 13 N 1.46507 * 109.47158 * 204.72176 * 10 9 6 14 14 C 1.36936 * 119.99957 * 154.99669 * 13 10 9 15 15 H 1.08001 * 119.99938 * 359.97438 * 14 13 10 16 16 C 1.38817 * 119.99709 * 180.02562 * 14 13 10 17 17 N 1.31617 * 119.99464 * 180.27733 * 16 14 13 18 18 Si 1.86800 * 119.99902 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 90.00170 * 18 16 14 20 20 H 1.48499 * 109.47026 * 210.00018 * 18 16 14 21 21 H 1.48496 * 109.47474 * 330.00054 * 18 16 14 22 22 C 1.38155 * 119.99619 * 359.51411 * 9 6 5 23 23 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46874 * 300.00034 * 1 2 3 25 25 H 1.08999 * 109.46883 * 60.00216 * 1 2 3 26 26 H 1.08003 * 119.99350 * 359.97227 * 4 3 2 27 27 H 1.08000 * 120.00325 * 180.02562 * 5 4 3 28 28 H 1.08994 * 109.47409 * 300.00125 * 8 7 6 29 29 H 1.09001 * 109.46946 * 60.00440 * 8 7 6 30 30 H 1.08999 * 109.47236 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.46965 * 60.00355 * 12 10 9 32 32 H 1.09003 * 109.46770 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.46873 * 299.99870 * 12 10 9 34 34 H 0.97000 * 119.99595 * 334.99869 * 13 10 9 35 35 H 0.97004 * 119.99499 * 179.72646 * 17 16 14 36 36 H 1.07997 * 120.00226 * 180.28281 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3033 3.6780 0.0055 7 8 3.9206 4.8897 0.0112 8 6 3.0808 6.0457 0.0169 9 6 4.0586 2.5150 -0.0004 10 6 5.5634 2.5938 -0.0002 11 1 5.8823 3.4535 -0.5896 12 6 6.0661 2.7460 1.4368 13 7 6.1166 1.3693 -0.5840 14 6 7.3591 1.3858 -1.1596 15 1 7.9309 2.3017 -1.1835 16 6 7.8830 0.2256 -1.7132 17 7 9.0794 0.2403 -2.2615 18 14 6.8934 -1.3582 -1.6724 19 1 6.0551 -1.4497 -2.8947 20 1 7.8185 -2.5186 -1.6187 21 1 6.0201 -1.3655 -0.4714 22 6 3.4313 1.2841 -0.0005 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2124 2.3184 0.0005 27 1 1.3298 4.5113 0.0019 28 1 2.4513 6.0420 -0.8729 29 1 2.4518 6.0334 0.9071 30 1 3.6986 6.9437 0.0216 31 1 5.7473 1.8863 2.0262 32 1 7.1546 2.8034 1.4368 33 1 5.6545 3.6571 1.8711 34 1 5.6028 0.5468 -0.5628 35 1 9.4471 -0.5714 -2.6448 36 1 4.0194 0.3783 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192505163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:41 Heat of formation + Delta-G solvation = -51.304448 kcal Electronic energy + Delta-G solvation = -18649.706288 eV Core-core repulsion = 15713.626978 eV Total energy + Delta-G solvation = -2936.079310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55025 -39.89039 -38.22997 -36.56896 -34.21800 -31.91102 -31.15662 -29.76657 -28.18659 -27.69379 -25.81365 -24.23927 -22.79568 -21.41297 -20.23378 -18.75237 -18.38235 -17.74428 -16.75646 -16.51403 -16.37288 -16.04926 -15.62701 -15.49331 -15.08521 -14.60000 -14.28341 -13.92138 -13.76236 -13.63350 -13.24554 -13.21372 -12.88614 -12.60047 -12.53332 -12.34435 -12.25392 -11.94118 -11.79452 -11.42167 -11.29565 -11.07557 -9.90998 -9.36780 -8.65705 -8.03357 -5.36400 0.24282 0.47715 1.34538 1.36895 1.43517 2.37221 2.45958 2.53343 2.70476 3.28109 3.52301 3.73582 3.78266 4.16715 4.27482 4.30314 4.43948 4.44708 4.46719 4.49301 4.53356 4.68704 4.74559 4.80660 4.88327 4.94717 4.99669 5.23999 5.27072 5.31567 5.46782 5.62414 5.77556 6.21272 6.40408 6.59783 7.05454 7.80887 8.01137 9.18225 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.008072 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.753988 B = 3468.013574 C = 4755.514735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.086 3.914 4 C -0.167 4.167 5 C -0.157 4.157 6 C 0.089 3.911 7 O -0.334 6.334 8 C 0.017 3.983 9 C -0.085 4.085 10 C 0.218 3.782 11 H 0.053 0.947 12 C -0.144 4.144 13 N -0.752 5.752 14 C -0.227 4.227 15 H 0.061 0.939 16 C -0.059 4.059 17 N -0.981 5.981 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.258 1.258 22 C -0.133 4.133 23 H 0.114 0.886 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.165 0.835 27 H 0.167 0.833 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.364 0.636 35 H 0.258 0.742 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.161 7.729 7.235 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.041 3.959 4 C -0.185 4.185 5 C -0.176 4.176 6 C 0.043 3.957 7 O -0.248 6.248 8 C -0.077 4.077 9 C -0.086 4.086 10 C 0.110 3.890 11 H 0.071 0.929 12 C -0.203 4.203 13 N -0.398 5.398 14 C -0.358 4.358 15 H 0.079 0.921 16 C -0.251 4.251 17 N -0.632 5.632 18 Si 0.772 3.228 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.183 1.183 22 C -0.153 4.153 23 H 0.133 0.867 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.183 0.817 27 H 0.184 0.816 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.684 7.676 7.165 24.996 hybrid contribution -0.134 -1.018 -0.294 1.069 sum -22.818 6.658 6.871 24.743 Atomic orbital electron populations 1.23355 0.76315 1.05478 1.02484 1.86072 1.23666 1.26741 1.89287 1.18900 0.91427 0.85465 1.00109 1.21290 1.01250 0.90521 1.05447 1.21310 0.92005 0.99715 1.04550 1.18710 0.91471 0.84938 1.00563 1.86122 1.36951 1.12697 1.89041 1.23347 0.96353 0.85614 1.02368 1.19323 0.95617 0.90930 1.02749 1.19041 0.87345 0.88773 0.93837 0.92853 1.22147 1.00496 1.01078 0.96589 1.42987 1.17834 1.08369 1.70570 1.19046 0.92609 0.96282 1.27875 0.92145 1.25384 0.97732 1.00951 1.01019 1.69864 1.18413 1.28734 1.46152 0.85576 0.78360 0.80210 0.78692 1.20500 1.21519 1.18335 1.20000 0.92437 0.97195 1.05623 0.86746 0.91125 0.91529 0.81736 0.81557 0.91674 0.91063 0.86923 0.93412 0.93872 0.91287 0.80011 0.93283 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.59 10.50 -93.29 -0.98 -10.57 16 3 C 0.09 2.59 6.69 22.49 0.15 2.74 16 4 C -0.17 -3.80 9.03 22.35 0.20 -3.60 16 5 C -0.16 -3.60 9.03 22.35 0.20 -3.40 16 6 C 0.09 2.71 6.66 22.49 0.15 2.86 16 7 O -0.33 -9.55 9.63 -93.39 -0.90 -10.45 16 8 C 0.02 0.29 9.81 113.37 1.11 1.40 16 9 C -0.08 -3.16 5.07 -19.78 -0.10 -3.26 16 10 C 0.22 9.47 2.82 44.24 0.12 9.60 16 11 H 0.05 2.49 7.63 -2.39 -0.02 2.47 16 12 C -0.14 -5.61 9.47 71.98 0.68 -4.93 16 13 N -0.75 -38.63 4.84 -326.49 -1.58 -40.22 16 14 C -0.23 -13.73 10.41 84.03 0.87 -12.85 16 15 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 16 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 17 N -0.98 -64.95 13.97 21.65 0.30 -64.64 16 18 Si 0.94 48.28 27.74 68.60 1.90 50.18 16 19 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 20 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 21 H -0.26 -12.29 6.52 99.48 0.65 -11.64 16 22 C -0.13 -4.93 9.17 22.36 0.21 -4.72 16 23 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 25 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.17 2.41 6.29 -2.91 -0.02 2.39 16 27 H 0.17 2.45 6.29 -2.91 -0.02 2.43 16 28 H 0.06 0.89 7.65 -2.39 -0.02 0.88 16 29 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.36 18.20 3.26 -92.71 -0.30 17.90 16 35 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 36 H 0.11 4.55 6.07 -2.91 -0.02 4.54 16 Total: -1.00 -75.95 298.16 4.65 -71.30 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.72 Total: 22.38 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.18 Total: -17.99 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -1.28 Total: -104.86 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.88 Total: -21.02 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.90 Total: 50.18 kcal Total: -75.95 4.65 -71.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192505163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.996 kcal (2) G-P(sol) polarization free energy of solvation -75.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds