Wall clock time and date at job start Mon Mar 30 2020 03:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 C 1.56593 * 110.21776 * 68.44973 * 3 2 1 5 5 C 1.47584 * 101.41559 * 142.09123 * 4 3 2 6 6 H 1.09006 * 104.11222 * 55.54042 * 5 4 3 7 7 C 1.44441 * 139.06585 * 188.74750 * 5 4 3 8 8 O 1.21226 * 127.61599 * 340.86876 * 7 5 4 9 9 N 1.37228 * 104.77487 * 160.84501 * 7 5 4 10 10 C 1.46500 * 123.58026 * 167.04623 * 9 7 5 11 11 C 1.50706 * 109.47299 * 89.99465 * 10 9 7 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.36538 * 112.84577 * 347.31074 * 9 7 5 20 20 O 1.21228 * 127.09784 * 163.67690 * 19 9 7 21 21 C 1.50888 * 105.72453 * 343.57411 * 19 9 7 22 22 H 1.08999 * 113.29879 * 275.24524 * 21 19 9 23 23 C 1.53011 * 118.50010 * 138.28330 * 21 19 9 24 24 H 1.09003 * 109.47133 * 59.99832 * 1 2 3 25 25 H 1.09006 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47288 * 300.00225 * 1 2 3 27 27 H 1.09002 * 109.47242 * 240.00200 * 2 1 3 28 28 H 1.08993 * 109.47083 * 120.00181 * 2 1 3 29 29 H 1.08995 * 110.13318 * 306.70101 * 3 2 1 30 30 H 1.09006 * 111.03547 * 24.06176 * 4 3 2 31 31 H 1.08995 * 111.03779 * 260.13423 * 4 3 2 32 32 H 1.09004 * 109.47078 * 330.00227 * 10 9 7 33 33 H 1.08993 * 109.47364 * 209.99998 * 10 9 7 34 34 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 35 35 H 1.09000 * 110.36192 * 342.40453 * 23 21 19 36 36 H 1.08991 * 110.36542 * 104.61414 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7114 2.1327 1.3667 5 6 2.9232 2.9474 1.5813 6 1 2.9971 3.5562 0.6801 7 6 3.5252 3.7563 2.6154 8 8 2.9820 4.2455 3.5825 9 7 4.8480 3.8486 2.2620 10 6 5.7849 4.7966 2.8700 11 6 6.4379 4.1585 4.0691 12 1 6.1810 3.1478 4.3498 13 6 7.3633 4.8650 4.8076 14 7 7.6801 6.0939 4.4626 15 14 8.1732 4.0739 6.2934 16 1 7.3656 4.3575 7.5069 17 1 8.2585 2.6057 6.0875 18 1 9.5393 4.6295 6.4670 19 6 5.1969 2.9670 1.2795 20 8 6.1912 3.0002 0.5867 21 6 4.0899 1.9426 1.2372 22 1 4.2176 1.1396 1.9631 23 6 3.5907 1.4630 -0.1273 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5884 2.0001 -0.8205 30 1 1.5914 1.3939 2.1592 31 1 0.8258 2.7626 1.2841 32 1 5.2454 5.6905 3.1830 33 1 6.5491 5.0695 2.1424 34 1 7.2597 6.5047 3.6910 35 1 3.8979 2.1576 -0.9091 36 1 3.9687 0.4630 -0.3394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229884542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:19 Heat of formation + Delta-G solvation = -59.723839 kcal Electronic energy + Delta-G solvation = -18827.123038 eV Core-core repulsion = 15890.678636 eV Total energy + Delta-G solvation = -2936.444402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.00665 -38.05790 -37.91154 -35.24597 -33.86707 -32.55179 -29.35955 -29.07433 -26.24567 -24.37110 -23.56093 -22.34856 -20.79109 -19.92769 -18.64183 -17.52465 -17.11051 -16.03104 -15.65589 -15.02758 -14.78611 -14.53351 -14.06901 -13.76139 -13.52651 -13.42712 -12.91268 -12.82727 -12.56522 -12.16051 -11.81353 -11.70560 -11.54385 -11.21211 -10.94331 -10.84314 -10.70629 -10.69408 -10.60480 -10.15961 -9.72184 -9.59044 -9.47090 -8.48354 -8.32259 -6.51005 -4.24118 2.01364 2.93652 3.26281 3.40730 3.44181 3.60067 3.65300 4.25855 4.39597 4.47113 4.64702 4.81011 4.93960 5.05571 5.10051 5.22561 5.26096 5.27287 5.34223 5.43192 5.57472 5.67895 5.74093 5.80408 5.87776 5.93824 5.96347 6.06992 6.19835 6.44606 6.56729 6.83718 7.60683 7.79917 7.85679 8.21033 8.44113 8.67640 9.45552 10.87770 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.035470 B = 0.005509 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.207040 B = 5081.335880 C = 5238.593405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.092 4.092 4 C -0.073 4.073 5 C -0.165 4.165 6 H 0.092 0.908 7 C 0.565 3.435 8 O -0.470 6.470 9 N -0.578 5.578 10 C 0.225 3.775 11 C -0.614 4.614 12 H 0.055 0.945 13 C 0.024 3.976 14 N -0.903 5.903 15 Si 1.078 2.922 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.281 1.281 19 C 0.540 3.460 20 O -0.478 6.478 21 C -0.136 4.136 22 H 0.129 0.871 23 C -0.102 4.102 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.268 0.732 35 H 0.075 0.925 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 -11.345 -9.725 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.110 4.110 4 C -0.111 4.111 5 C -0.187 4.187 6 H 0.110 0.890 7 C 0.354 3.646 8 O -0.341 6.341 9 N -0.322 5.322 10 C 0.107 3.893 11 C -0.652 4.652 12 H 0.073 0.927 13 C -0.181 4.181 14 N -0.539 5.539 15 Si 0.905 3.095 16 H -0.211 1.211 17 H -0.214 1.214 18 H -0.207 1.207 19 C 0.329 3.671 20 O -0.349 6.349 21 C -0.158 4.158 22 H 0.147 0.853 23 C -0.141 4.141 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.848 -10.716 -8.382 18.041 hybrid contribution -0.949 -0.113 -1.211 1.543 sum -12.797 -10.829 -9.593 19.315 Atomic orbital electron populations 1.21800 0.95783 1.01534 1.02035 1.21610 0.95934 0.95506 1.02321 1.22721 0.94516 0.96630 0.97147 1.20975 0.95155 0.97847 0.97143 1.21195 0.98246 0.99030 1.00194 0.89048 1.18652 0.81869 0.79794 0.84282 1.90704 1.67986 1.47707 1.27705 1.48460 1.11639 1.36995 1.35131 1.19626 0.87577 0.87909 0.94202 1.22149 1.27350 1.02569 1.13177 0.92691 1.25882 0.94947 0.95311 1.01952 1.70783 1.42388 1.13346 1.27347 0.83420 0.76530 0.74828 0.74734 1.21126 1.21388 1.20687 1.20816 0.85880 0.82314 0.78093 1.90683 1.28124 1.74295 1.41814 1.23607 0.93294 0.97753 1.01130 0.85310 1.22118 0.94533 1.02682 0.94718 0.92830 0.92891 0.92344 0.91734 0.91518 0.90123 0.90222 0.90234 0.94662 0.94197 0.92150 0.90592 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.78 37.16 0.36 -0.66 16 2 C -0.12 -0.84 5.15 -26.73 -0.14 -0.98 16 3 C -0.09 -0.78 2.84 -87.29 -0.25 -1.03 16 4 C -0.07 -0.75 5.43 -27.41 -0.15 -0.90 16 5 C -0.17 -2.35 3.30 -94.61 -0.31 -2.66 16 6 H 0.09 1.24 6.62 -51.93 -0.34 0.89 16 7 C 0.56 11.30 7.77 -12.70 -0.10 11.20 16 8 O -0.47 -10.93 17.91 5.60 0.10 -10.83 16 9 N -0.58 -12.84 2.70 -117.68 -0.32 -13.16 16 10 C 0.23 6.01 4.88 -5.19 -0.03 5.98 16 11 C -0.61 -17.90 9.39 -34.44 -0.32 -18.22 16 12 H 0.05 1.61 7.81 -52.49 -0.41 1.20 16 13 C 0.02 0.70 5.46 -17.82 -0.10 0.61 16 14 N -0.90 -27.64 13.65 55.43 0.76 -26.88 16 15 Si 1.08 25.77 29.90 -169.99 -5.08 20.68 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.54 10.74 7.35 -10.09 -0.07 10.66 16 20 O -0.48 -10.86 17.73 5.60 0.10 -10.76 16 21 C -0.14 -1.93 3.83 -89.06 -0.34 -2.27 16 22 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 23 C -0.10 -1.08 5.83 -25.34 -0.15 -1.23 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.40 7.55 -51.93 -0.39 0.00 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.98 7.99 -51.93 -0.41 0.56 16 33 H 0.04 1.11 7.78 -51.93 -0.40 0.71 16 34 H 0.27 8.13 7.22 -40.82 -0.29 7.84 16 35 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.08 0.75 7.75 -51.93 -0.40 0.35 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -33.69 299.76 -6.76 -40.45 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.24 Total: -4.51 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.59 Total: 0.50 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.44 Total: -40.04 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.20 Total: -21.59 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.69 -6.76 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229884542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.278 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds