Wall clock time and date at job start Mon Mar 30 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.56245 * 110.27425 * 68.71372 * 3 2 1 5 5 C 1.47226 * 103.64524 * 113.67885 * 4 3 2 6 6 H 1.09004 * 103.74142 * 293.59533 * 5 4 3 7 7 C 1.44731 * 138.59289 * 162.48152 * 5 4 3 8 8 O 1.21222 * 127.68634 * 16.96143 * 7 5 4 9 9 N 1.37214 * 104.62047 * 196.93590 * 7 5 4 10 10 C 1.46499 * 123.55095 * 192.89063 * 9 7 5 11 11 C 1.50701 * 109.46992 * 90.00187 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.36510 * 112.89192 * 13.15978 * 9 7 5 20 20 O 1.21223 * 127.05937 * 195.90816 * 19 9 7 21 21 C 1.50595 * 105.96548 * 15.80390 * 19 9 7 22 22 H 1.08990 * 113.35502 * 86.09572 * 21 19 9 23 23 C 1.53678 * 118.38195 * 223.99991 * 21 19 9 24 24 H 1.08998 * 109.47311 * 60.00146 * 1 2 3 25 25 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47190 * 300.00049 * 1 2 3 27 27 H 1.09010 * 109.46841 * 240.00103 * 2 1 3 28 28 H 1.08998 * 109.47528 * 120.00361 * 2 1 3 29 29 H 1.09004 * 110.17710 * 306.83726 * 3 2 1 30 30 H 1.09001 * 110.58997 * 355.14113 * 4 3 2 31 31 H 1.09004 * 110.58738 * 232.21808 * 4 3 2 32 32 H 1.09002 * 109.47391 * 330.00177 * 10 9 7 33 33 H 1.09001 * 109.46813 * 210.00234 * 10 9 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.09005 * 110.85341 * 264.55802 * 23 21 19 36 36 H 1.08997 * 110.85599 * 28.00000 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7188 2.1303 1.3657 5 6 3.0463 2.3603 1.9594 6 1 3.4213 1.3552 2.1525 7 6 3.6443 3.1670 3.0016 8 8 3.0821 3.7392 3.9105 9 7 4.9894 3.1395 2.7321 10 6 6.0138 3.5935 3.6759 11 6 6.4468 2.4383 4.5414 12 1 6.0036 1.4633 4.4020 13 6 7.4095 2.6258 5.5105 14 7 7.9495 3.8129 5.6798 15 14 7.9467 1.1937 6.5827 16 1 9.0864 0.4930 5.9383 17 1 8.3666 1.7018 7.9134 18 1 6.8142 0.2477 6.7490 19 6 5.2721 2.6499 1.4896 20 8 6.3471 2.2634 1.0838 21 6 3.9749 2.6852 0.7254 22 1 3.7824 3.6444 0.2451 23 6 3.5962 1.4645 -0.1278 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.5870 2.0015 -0.8189 30 1 1.1256 1.4694 1.9976 31 1 1.2012 3.0762 1.2061 32 1 5.6041 4.3845 4.3041 33 1 6.8724 3.9759 3.1240 34 1 8.6265 3.9449 6.3618 35 1 3.8985 1.6073 -1.1653 36 1 4.0352 0.5543 0.2807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229884558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:23 Heat of formation + Delta-G solvation = -55.820872 kcal Electronic energy + Delta-G solvation = -18845.334519 eV Core-core repulsion = 15909.059362 eV Total energy + Delta-G solvation = -2936.275157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.90614 -37.96928 -37.80973 -35.12147 -33.63460 -32.42971 -29.34142 -29.09301 -26.51808 -24.41081 -23.55596 -22.18963 -20.76994 -19.66993 -18.49277 -17.54440 -16.58498 -16.06390 -15.41509 -15.13378 -14.80249 -14.41279 -14.28251 -13.77416 -13.57078 -13.17925 -12.85260 -12.62188 -12.37917 -12.03676 -11.88876 -11.56602 -11.43895 -11.19359 -10.86596 -10.79036 -10.77443 -10.74319 -10.38937 -10.29068 -9.97990 -9.50048 -9.39564 -8.53125 -8.48030 -6.15389 -4.21128 2.11195 3.07933 3.27967 3.31787 3.33664 3.40934 3.71722 4.30037 4.37918 4.52049 4.71631 4.81705 5.00266 5.10506 5.20683 5.22538 5.27197 5.29779 5.40750 5.51094 5.60927 5.76859 5.78997 5.87581 5.89291 5.98432 6.01868 6.15351 6.27657 6.61669 6.80312 7.19481 7.77161 7.79290 7.94193 8.03387 8.48629 8.81084 9.44179 10.93855 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.005771 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.279031 B = 4851.049144 C = 4897.850304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.077 4.077 5 C -0.167 4.167 6 H 0.093 0.907 7 C 0.569 3.431 8 O -0.478 6.478 9 N -0.581 5.581 10 C 0.235 3.765 11 C -0.535 4.535 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.535 3.465 20 O -0.471 6.471 21 C -0.140 4.140 22 H 0.130 0.870 23 C -0.100 4.100 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.079 0.921 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.387 -4.852 -12.613 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 C -0.115 4.115 5 C -0.188 4.188 6 H 0.111 0.889 7 C 0.358 3.642 8 O -0.349 6.349 9 N -0.326 5.326 10 C 0.118 3.882 11 C -0.574 4.574 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.529 5.529 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.323 3.677 20 O -0.341 6.341 21 C -0.161 4.161 22 H 0.147 0.853 23 C -0.138 4.138 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.885 -4.659 -12.175 18.329 hybrid contribution 0.596 -0.744 0.778 1.231 sum -12.289 -5.403 -11.397 17.610 Atomic orbital electron populations 1.21812 0.95735 1.01532 1.02027 1.21603 0.95961 0.95790 1.02337 1.22722 0.94617 0.96384 0.97122 1.20790 0.93952 1.01355 0.95362 1.21181 0.99286 1.02789 0.95574 0.88893 1.18676 0.82133 0.78814 0.84548 1.90687 1.67818 1.42907 1.33536 1.48642 1.08930 1.57569 1.17432 1.19581 0.85080 0.96414 0.87149 1.21276 1.22748 0.95678 1.17683 0.92308 1.24917 0.95663 0.96234 0.96987 1.69922 1.27490 1.21700 1.33788 0.86404 0.78993 0.82006 0.79527 1.20353 1.20877 1.19806 1.20750 0.89349 0.75349 0.82222 1.90697 1.28289 1.41747 1.73402 1.23726 0.93449 1.02393 0.96581 0.85263 1.22389 0.94927 0.96270 1.00222 0.92781 0.92913 0.92323 0.91690 0.91673 0.89895 0.90236 0.90690 0.93091 0.93617 0.92416 0.90247 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.76 37.16 0.36 -0.73 16 2 C -0.12 -0.95 5.20 -26.73 -0.14 -1.09 16 3 C -0.09 -0.78 2.97 -87.18 -0.26 -1.04 16 4 C -0.08 -0.81 5.86 -27.77 -0.16 -0.97 16 5 C -0.17 -2.43 3.22 -94.62 -0.30 -2.73 16 6 H 0.09 1.40 6.54 -51.93 -0.34 1.06 16 7 C 0.57 11.35 7.79 -12.58 -0.10 11.26 16 8 O -0.48 -10.95 17.78 5.61 0.10 -10.85 16 9 N -0.58 -12.83 2.70 -117.71 -0.32 -13.15 16 10 C 0.24 6.30 5.55 -5.19 -0.03 6.27 16 11 C -0.54 -15.48 9.39 -34.44 -0.32 -15.80 16 12 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 13 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 14 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 15 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.54 10.53 7.35 -10.25 -0.08 10.45 16 20 O -0.47 -10.78 17.89 5.61 0.10 -10.68 16 21 C -0.14 -1.91 3.90 -88.83 -0.35 -2.26 16 22 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 23 C -0.10 -1.07 5.76 -24.69 -0.14 -1.21 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.42 6.99 -51.93 -0.36 0.06 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.80 6.88 -51.93 -0.36 0.44 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 1.44 7.96 -51.93 -0.41 1.03 16 33 H 0.05 1.29 8.11 -51.93 -0.42 0.87 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -32.80 300.15 -6.71 -39.52 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -5.22 Total: -4.51 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.61 Total: 3.92 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.42 Total: -38.93 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.20 Total: -21.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.80 -6.71 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229884558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.303 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds