Wall clock time and date at job start Mon Mar 30 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99852 * 2 1 4 4 H 1.08995 * 109.46786 * 184.20344 * 3 2 1 5 5 C 1.50702 * 109.46692 * 64.20555 * 3 2 1 6 6 H 1.08003 * 119.99755 * 244.21495 * 5 3 2 7 7 C 1.37874 * 120.00258 * 64.22180 * 5 3 2 8 8 N 1.31519 * 119.99901 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47503 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47325 * 119.99656 * 9 7 5 12 12 H 1.48499 * 109.47026 * 239.99426 * 9 7 5 13 13 C 1.50697 * 109.47168 * 304.20425 * 3 2 1 14 14 C 1.38159 * 119.99944 * 101.71983 * 13 3 2 15 15 C 1.38672 * 119.99931 * 179.72405 * 14 13 3 16 16 O 1.35990 * 119.99751 * 180.02562 * 15 14 13 17 17 C 1.42897 * 116.99710 * 179.97438 * 16 15 14 18 18 C 1.38712 * 120.00091 * 0.02562 * 15 14 13 19 19 C 1.38110 * 120.00384 * 0.02562 * 18 15 14 20 20 C 1.38676 * 120.00135 * 281.44454 * 13 3 2 21 21 O 1.35978 * 120.00106 * 0.25932 * 20 13 3 22 22 C 1.42897 * 117.00333 * 179.97438 * 21 20 13 23 23 H 1.09004 * 109.46888 * 55.54646 * 1 2 3 24 24 H 1.09005 * 109.46984 * 175.53743 * 1 2 3 25 25 H 1.08996 * 109.47834 * 295.54581 * 1 2 3 26 26 H 1.00899 * 111.00077 * 236.05203 * 2 1 3 27 27 H 0.97000 * 119.99945 * 180.02562 * 8 7 5 28 28 H 1.08009 * 119.99817 * 359.75100 * 14 13 3 29 29 H 1.08998 * 109.47504 * 60.00042 * 17 16 15 30 30 H 1.09005 * 109.47114 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.47140 * 299.99506 * 17 16 15 32 32 H 1.08002 * 119.99958 * 179.97438 * 18 15 14 33 33 H 1.07996 * 120.00022 * 179.97438 * 19 18 15 34 34 H 1.08999 * 109.46883 * 299.99904 * 22 21 20 35 35 H 1.08999 * 109.47001 * 59.99679 * 22 21 20 36 36 H 1.09000 * 109.47125 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0824 1.3434 -0.0753 5 6 1.5982 2.0619 1.2793 6 1 0.9404 2.9181 1.2491 7 6 2.0745 1.6008 2.4882 8 7 2.8751 0.5581 2.5250 9 14 1.5826 2.4571 4.0738 10 1 0.6814 3.5956 3.7627 11 1 0.8776 1.4946 4.9581 12 1 2.7982 2.9621 4.7613 13 6 1.4298 2.1267 -1.1750 14 6 0.3906 3.0177 -0.9881 15 6 -0.1261 3.7168 -2.0684 16 8 -1.1487 4.5942 -1.8843 17 6 -1.6312 5.2802 -3.0413 18 6 0.4001 3.5213 -3.3369 19 6 1.4382 2.6298 -3.5241 20 6 1.9562 1.9316 -2.4431 21 8 2.9792 1.0549 -2.6271 22 6 3.4719 0.9033 -3.9598 23 1 -0.3633 0.5814 -0.8474 24 1 -0.3633 -1.0246 -0.0800 25 1 -0.3634 0.4431 0.9271 26 1 1.8306 -0.5260 -0.7814 27 1 3.2099 0.2334 3.3755 28 1 -0.0191 3.1699 -0.0004 29 1 -1.9953 4.5545 -3.7685 30 1 -2.4447 5.9470 -2.7555 31 1 -0.8219 5.8620 -3.4825 32 1 -0.0026 4.0655 -4.1784 33 1 1.8476 2.4773 -4.5117 34 1 2.6673 0.5545 -4.6071 35 1 3.8398 1.8631 -4.3225 36 1 4.2847 0.1770 -3.9663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259157018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:48 Heat of formation + Delta-G solvation = -33.159344 kcal Electronic energy + Delta-G solvation = -19043.524372 eV Core-core repulsion = 16108.231892 eV Total energy + Delta-G solvation = -2935.292479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.06546 -38.54883 -36.51908 -34.73185 -31.82223 -30.53106 -29.31622 -27.40655 -26.56910 -26.26077 -24.38261 -22.26744 -21.47339 -19.89413 -17.53629 -17.10988 -16.54126 -15.68210 -15.50517 -15.19442 -14.62676 -14.43273 -14.30906 -13.89856 -13.18222 -13.09334 -12.61303 -12.46958 -12.15823 -11.94970 -11.77460 -11.32508 -11.29369 -11.05940 -10.81662 -10.58599 -10.35891 -10.15169 -10.02137 -9.65213 -8.85416 -8.35849 -8.14983 -7.23304 -6.78211 -5.81208 -3.92251 1.85345 2.01498 3.38669 3.46942 3.50359 3.62336 3.83548 4.30274 4.54660 5.06265 5.18092 5.25274 5.27454 5.34658 5.37363 5.44827 5.52774 5.65597 5.70366 5.98499 6.07059 6.26905 6.39734 6.53022 6.66904 6.70519 6.82592 6.86215 7.14187 7.28660 7.67748 7.74746 7.98585 8.02424 8.27696 8.64567 8.98277 9.23438 9.74960 11.25360 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.008700 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.425932 B = 3217.708128 C = 4283.043662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.646 5.646 3 C 0.259 3.741 4 H 0.058 0.942 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.084 3.916 8 N -0.851 5.851 9 Si 0.880 3.120 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C -0.068 4.068 14 C -0.093 4.093 15 C 0.079 3.921 16 O -0.319 6.319 17 C 0.031 3.969 18 C -0.191 4.191 19 C -0.181 4.181 20 C 0.082 3.918 21 O -0.306 6.306 22 C 0.031 3.969 23 H -0.001 1.001 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.304 0.696 27 H 0.255 0.745 28 H 0.150 0.850 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.014 4.182 -13.390 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.272 5.272 3 C 0.151 3.849 4 H 0.075 0.925 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.122 4.122 8 N -0.486 5.486 9 Si 0.708 3.292 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.071 4.071 14 C -0.112 4.112 15 C 0.034 3.966 16 O -0.234 6.234 17 C -0.064 4.064 18 C -0.210 4.210 19 C -0.200 4.200 20 C 0.037 3.963 21 O -0.220 6.220 22 C -0.065 4.065 23 H 0.018 0.982 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.168 0.832 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.841 3.883 -12.250 13.412 hybrid contribution -0.495 0.891 -0.786 1.287 sum -4.335 4.774 -13.035 14.543 Atomic orbital electron populations 1.21954 0.90764 0.97838 1.00046 1.60991 1.05278 1.15166 1.45811 1.18184 0.95426 0.83304 0.87946 0.92458 1.21084 1.31429 1.13940 0.90499 0.92007 1.24917 0.94522 0.94320 0.98478 1.70087 1.31047 1.22620 1.24854 0.86757 0.78366 0.79706 0.84409 1.19789 1.21128 1.21183 1.20860 0.94660 0.97036 0.94588 1.20672 0.96718 0.95621 0.98227 1.19088 0.90260 0.93156 0.94046 1.86086 1.48674 1.54322 1.34293 1.22908 0.99055 0.96063 0.88391 1.20752 1.00909 1.03477 0.95851 1.20835 1.00367 1.00995 0.97829 1.18990 0.90326 0.92906 0.94044 1.86181 1.48086 1.58829 1.28884 1.22921 0.98920 1.01395 0.83268 0.98218 0.94834 0.91481 0.88065 0.93527 0.83224 0.93324 0.88897 0.93260 0.86393 0.86278 0.93523 0.93448 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 9.98 60.06 0.60 1.58 16 2 N -0.65 -15.80 6.34 -116.49 -0.74 -16.54 16 3 C 0.26 6.57 2.17 -70.01 -0.15 6.42 16 4 H 0.06 1.63 7.90 -51.93 -0.41 1.22 16 5 C -0.53 -14.49 7.04 -34.44 -0.24 -14.73 16 6 H 0.06 1.66 5.29 -52.48 -0.28 1.38 16 7 C 0.08 2.35 5.41 -17.82 -0.10 2.25 16 8 N -0.85 -24.94 12.96 55.43 0.72 -24.22 16 9 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C -0.07 -1.51 4.00 -104.49 -0.42 -1.93 16 14 C -0.09 -1.99 8.02 -39.45 -0.32 -2.31 16 15 C 0.08 1.46 6.68 -39.25 -0.26 1.20 16 16 O -0.32 -5.42 10.50 -19.71 -0.21 -5.63 16 17 C 0.03 0.36 9.81 101.05 0.99 1.35 16 18 C -0.19 -3.11 9.03 -39.45 -0.36 -3.47 16 19 C -0.18 -3.02 9.03 -39.45 -0.36 -3.38 16 20 C 0.08 1.61 6.66 -39.24 -0.26 1.35 16 21 O -0.31 -5.70 9.62 -19.67 -0.19 -5.89 16 22 C 0.03 0.39 9.81 101.05 0.99 1.38 16 23 H 0.00 -0.01 6.23 -51.93 -0.32 -0.33 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.60 7.37 -51.93 -0.38 1.22 16 26 H 0.30 6.99 8.76 -39.29 -0.34 6.65 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.15 3.39 5.69 -52.48 -0.30 3.09 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 32 H 0.12 1.55 6.29 -52.49 -0.33 1.22 16 33 H 0.12 1.61 6.29 -52.49 -0.33 1.28 16 34 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 35 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -31.10 295.14 -5.56 -36.66 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.69 Total: 5.00 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 0.12 Total: -10.28 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.02 Total: -40.77 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.40 Total: -11.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.10 -5.56 -36.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259157018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.505 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds