Wall clock time and date at job start Mon Mar 30 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99628 * 2 1 4 4 H 1.08999 * 109.47401 * 33.03692 * 3 2 1 5 5 C 1.50706 * 109.47028 * 153.03793 * 3 2 1 6 6 H 1.07995 * 119.99880 * 119.99676 * 5 3 2 7 7 C 1.37876 * 119.99455 * 299.99846 * 5 3 2 8 8 N 1.31509 * 120.00601 * 0.02562 * 7 5 3 9 9 Si 1.86811 * 119.99667 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46911 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46764 * 119.99833 * 9 7 5 12 12 H 1.48495 * 109.47206 * 239.99783 * 9 7 5 13 13 C 1.50698 * 109.47200 * 273.03363 * 3 2 1 14 14 C 1.38149 * 119.99897 * 333.90449 * 13 3 2 15 15 C 1.38681 * 120.00103 * 179.72224 * 14 13 3 16 16 O 1.35981 * 120.00239 * 180.27275 * 15 14 13 17 17 C 1.42909 * 116.99867 * 180.27377 * 16 15 14 18 18 C 1.38718 * 119.99786 * 0.54847 * 15 14 13 19 19 C 1.38112 * 119.99958 * 359.72744 * 18 15 14 20 20 C 1.38672 * 120.00241 * 154.17453 * 13 3 2 21 21 O 1.35984 * 119.99836 * 359.97438 * 20 13 3 22 22 C 1.42907 * 116.99992 * 179.97438 * 21 20 13 23 23 H 1.08998 * 109.47246 * 304.81431 * 1 2 3 24 24 H 1.09006 * 109.47183 * 64.81327 * 1 2 3 25 25 H 1.08997 * 109.47305 * 184.81239 * 1 2 3 26 26 H 1.00905 * 111.00050 * 123.94977 * 2 1 3 27 27 H 0.97002 * 120.00218 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.00307 * 359.96965 * 14 13 3 29 29 H 1.08994 * 109.46762 * 60.00163 * 17 16 15 30 30 H 1.09002 * 109.46871 * 179.97438 * 17 16 15 31 31 H 1.08993 * 109.46946 * 300.00159 * 17 16 15 32 32 H 1.08001 * 120.00277 * 179.70329 * 18 15 14 33 33 H 1.08000 * 120.00070 * 179.97438 * 19 18 15 34 34 H 1.09002 * 109.46674 * 179.97438 * 22 21 20 35 35 H 1.09002 * 109.47247 * 300.00069 * 22 21 20 36 36 H 1.08995 * 109.46674 * 60.00414 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3212 2.0194 0.5602 5 6 3.3577 1.3867 0.6442 6 1 4.2169 1.7219 0.0824 7 6 3.5069 0.9726 1.9508 8 7 2.4607 0.5639 2.6348 9 14 5.1957 0.9907 2.7492 10 1 6.1987 1.4895 1.7743 11 1 5.1727 1.8836 3.9357 12 1 5.5579 -0.3857 3.1725 13 6 2.1051 1.8674 -1.4188 14 6 2.2654 0.9675 -2.4546 15 6 2.3607 1.4235 -3.7609 16 8 2.5129 0.5373 -4.7810 17 6 2.6103 1.0774 -6.1005 18 6 2.3064 2.7839 -4.0262 19 6 2.1519 3.6840 -2.9901 20 6 2.0509 3.2275 -1.6841 21 8 1.8981 4.1136 -0.6640 22 6 1.8508 5.4993 -1.0100 23 1 -0.3634 0.5867 0.8437 24 1 -0.3634 0.4374 -0.9300 25 1 -0.3634 -1.0240 0.0862 26 1 1.8306 -0.5261 0.7814 27 1 2.5657 0.2729 3.5542 28 1 2.3125 -0.0914 -2.2476 29 1 3.4725 1.7416 -6.1584 30 1 2.7289 0.2652 -6.8177 31 1 1.7041 1.6373 -6.3316 32 1 2.3854 3.1394 -5.0430 33 1 2.1101 4.7432 -3.1967 34 1 1.7261 6.0954 -0.1060 35 1 2.7791 5.7817 -1.5067 36 1 1.0108 5.6777 -1.6812 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259157021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:51 Heat of formation + Delta-G solvation = -43.548158 kcal Electronic energy + Delta-G solvation = -18903.310861 eV Core-core repulsion = 15967.567889 eV Total energy + Delta-G solvation = -2935.742972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85735 -38.39416 -36.28197 -34.78343 -31.92864 -30.55518 -29.31434 -27.27015 -26.62962 -26.34874 -23.64271 -22.63431 -21.26014 -19.84575 -17.40460 -16.96296 -16.49273 -16.18913 -15.36200 -15.00061 -14.77738 -14.28274 -13.84875 -13.71522 -13.29027 -12.99390 -12.36364 -12.25440 -12.18755 -12.03835 -11.76961 -11.35203 -11.18204 -11.02584 -10.91559 -10.75436 -10.53775 -10.22641 -9.91317 -9.52375 -9.27294 -8.66955 -7.98716 -7.03761 -6.95632 -6.08232 -4.13542 2.01227 2.17040 3.29583 3.37492 3.43361 3.72633 4.02176 4.36735 4.53076 5.15550 5.17305 5.29760 5.32309 5.39008 5.47183 5.52486 5.59488 5.76022 5.81240 6.09888 6.20937 6.36672 6.45511 6.55728 6.67312 6.82511 6.84042 6.96259 7.11329 7.38883 7.54241 7.86943 7.91599 8.05792 8.23100 8.69228 8.92660 9.16091 9.51905 10.98376 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.007644 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.738045 B = 3662.149250 C = 4060.726161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.689 5.689 3 C 0.250 3.750 4 H 0.025 0.975 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.063 3.937 8 N -0.900 5.900 9 Si 0.899 3.101 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 C -0.024 4.024 14 C -0.089 4.089 15 C 0.076 3.924 16 O -0.320 6.320 17 C 0.032 3.968 18 C -0.195 4.195 19 C -0.184 4.184 20 C 0.089 3.911 21 O -0.297 6.297 22 C 0.030 3.970 23 H 0.013 0.987 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.362 0.638 27 H 0.264 0.736 28 H 0.147 0.853 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 5.068 -11.339 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.323 5.323 3 C 0.142 3.858 4 H 0.043 0.957 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.540 5.540 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.209 1.209 13 C -0.026 4.026 14 C -0.108 4.108 15 C 0.032 3.968 16 O -0.235 6.235 17 C -0.064 4.064 18 C -0.214 4.214 19 C -0.203 4.203 20 C 0.044 3.956 21 O -0.211 6.211 22 C -0.066 4.066 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.185 0.815 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.786 4.678 -11.617 12.650 hybrid contribution 0.662 0.880 0.930 1.442 sum -1.123 5.558 -10.687 12.098 Atomic orbital electron populations 1.22019 0.91852 0.99028 0.98562 1.60770 1.04268 1.16568 1.50711 1.17946 0.95797 0.86623 0.85425 0.95728 1.21160 0.93113 1.42783 0.96494 0.92121 1.25008 0.97133 0.94813 0.96860 1.69817 1.28994 1.44598 1.10553 0.86407 0.84078 0.77643 0.79142 1.19685 1.21061 1.20885 1.19820 0.96035 0.88531 0.98199 1.20270 1.01571 1.01650 0.87320 1.19020 1.01416 0.88015 0.88314 1.86068 1.88863 1.34220 1.14315 1.22888 1.00590 1.00180 0.82713 1.20705 1.09734 0.92138 0.98802 1.20792 1.08379 0.99179 0.91918 1.18859 1.00573 0.89962 0.86202 1.86279 1.88080 1.15062 1.31632 1.22912 1.00214 0.81606 1.01898 0.96836 0.94169 0.93877 0.81546 0.92638 0.83582 0.93325 0.89030 0.93376 0.86540 0.86331 0.88969 0.93479 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.54 60.06 0.63 1.42 16 2 N -0.69 -16.87 5.38 -116.49 -0.63 -17.50 16 3 C 0.25 6.48 1.85 -70.01 -0.13 6.35 16 4 H 0.03 0.72 7.21 -51.93 -0.37 0.35 16 5 C -0.50 -13.81 8.67 -34.44 -0.30 -14.11 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 7 C 0.06 1.73 5.11 -17.82 -0.09 1.64 16 8 N -0.90 -25.17 11.80 55.43 0.65 -24.52 16 9 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C -0.02 -0.56 4.90 -104.50 -0.51 -1.08 16 14 C -0.09 -1.94 9.26 -39.45 -0.37 -2.30 16 15 C 0.08 1.45 6.69 -39.24 -0.26 1.19 16 16 O -0.32 -5.48 10.50 -19.68 -0.21 -5.69 16 17 C 0.03 0.37 9.81 101.05 0.99 1.37 16 18 C -0.19 -3.31 9.03 -39.45 -0.36 -3.67 16 19 C -0.18 -3.25 9.03 -39.45 -0.36 -3.61 16 20 C 0.09 1.89 6.66 -39.24 -0.26 1.63 16 21 O -0.30 -6.21 9.61 -19.69 -0.19 -6.40 16 22 C 0.03 0.43 9.81 101.05 0.99 1.42 16 23 H 0.01 0.30 7.93 -51.93 -0.41 -0.11 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.36 9.54 6.53 -39.29 -0.26 9.28 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.15 3.27 7.29 -52.49 -0.38 2.89 16 29 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.12 1.60 6.29 -52.49 -0.33 1.27 16 33 H 0.12 1.73 6.29 -52.49 -0.33 1.40 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 36 H 0.04 0.56 7.66 -51.93 -0.40 0.16 16 LS Contribution 300.30 15.07 4.53 4.53 Total: -1.00 -30.15 300.30 -5.79 -35.94 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.91 Total: 7.03 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.02 Total: -9.76 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.03 Total: -42.02 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.40 Total: -12.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.15 -5.79 -35.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259157021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.605 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds