Wall clock time and date at job start Mon Mar 30 2020 04:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.46981 * 2 1 4 4 C 1.50695 * 109.46738 * 239.99834 * 2 1 3 5 5 C 1.34516 * 125.78653 * 99.72011 * 4 2 1 6 6 C 1.41384 * 106.83915 * 179.88748 * 5 4 2 7 7 C 1.34517 * 106.84316 * 0.36713 * 6 5 4 8 8 O 1.34303 * 125.79320 * 280.01958 * 4 2 1 9 9 N 1.46902 * 109.47040 * 120.00217 * 2 1 3 10 10 C 1.47016 * 110.99998 * 49.23957 * 9 2 1 11 11 C 1.53096 * 109.25375 * 182.35179 * 10 9 2 12 12 O 1.43014 * 109.29534 * 303.21525 * 11 10 9 13 13 C 1.43018 * 113.73802 * 58.64805 * 12 11 10 14 14 C 1.47009 * 110.99765 * 172.92180 * 9 2 1 15 15 H 1.09002 * 109.50920 * 297.53779 * 14 9 2 16 16 C 1.50707 * 109.51036 * 57.66929 * 14 9 2 17 17 H 1.08002 * 119.99730 * 33.83354 * 16 14 9 18 18 C 1.37874 * 119.99886 * 213.83631 * 16 14 9 19 19 N 1.31513 * 119.99379 * 179.59228 * 18 16 14 20 20 Si 1.86793 * 120.00407 * 359.59659 * 18 16 14 21 21 H 1.48492 * 109.47532 * 89.29188 * 20 18 16 22 22 H 1.48503 * 109.47033 * 209.29861 * 20 18 16 23 23 H 1.48509 * 109.47081 * 329.29224 * 20 18 16 24 24 H 1.09005 * 109.46971 * 173.74667 * 1 2 3 25 25 H 1.09002 * 109.47157 * 293.74253 * 1 2 3 26 26 H 1.08996 * 109.47203 * 53.74604 * 1 2 3 27 27 H 1.08001 * 126.58470 * 0.02562 * 5 4 2 28 28 H 1.08006 * 126.58165 * 180.12182 * 6 5 4 29 29 H 1.07994 * 125.79057 * 179.75392 * 7 6 5 30 30 H 1.08992 * 109.47440 * 62.43799 * 10 9 2 31 31 H 1.09001 * 109.54247 * 302.30506 * 10 9 2 32 32 H 1.09004 * 109.50657 * 183.25782 * 11 10 9 33 33 H 1.08996 * 109.51029 * 63.17303 * 11 10 9 34 34 H 1.09005 * 109.50127 * 61.26767 * 13 12 11 35 35 H 1.08997 * 109.50958 * 181.34672 * 13 12 11 36 36 H 0.97006 * 119.99858 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.4681 -0.1191 -2.3573 6 6 2.8432 -1.1543 -3.2443 7 6 2.6064 -2.3164 -2.6095 8 8 2.1154 -2.0414 -1.3901 9 7 2.0197 -0.6926 1.1994 10 6 1.3505 -1.9906 1.3684 11 6 1.8462 -2.6501 2.6580 12 8 3.2699 -2.7766 2.6071 13 6 3.9531 -1.5308 2.4441 14 6 3.4794 -0.8603 1.1518 15 1 3.7465 -1.4845 0.2990 16 6 4.1369 0.4888 1.0146 17 1 3.6959 1.3548 1.4857 18 6 5.3014 0.6174 0.2876 19 7 5.8707 1.7961 0.1612 20 14 6.0702 -0.8824 -0.5178 21 1 5.5118 -1.0520 -1.8832 22 1 7.5413 -0.6987 -0.6037 23 1 5.7687 -2.0892 0.2936 24 1 -0.3633 -1.0216 -0.1119 25 1 -0.3633 0.4138 0.9407 26 1 -0.3633 0.6077 -0.8287 27 1 2.5233 0.9426 -2.5472 28 1 3.2396 -1.0350 -4.2419 29 1 2.7813 -3.3031 -3.0122 30 1 1.5827 -2.6325 0.5188 31 1 0.2725 -1.8401 1.4277 32 1 1.3964 -3.6379 2.7579 33 1 1.5660 -2.0345 3.5127 34 1 3.7341 -0.8820 3.2922 35 1 5.0271 -1.7090 2.3901 36 1 6.6902 1.8866 -0.3499 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259598216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:32 Heat of formation + Delta-G solvation = -16.389600 kcal Electronic energy + Delta-G solvation = -20139.530781 eV Core-core repulsion = 17204.965492 eV Total energy + Delta-G solvation = -2934.565289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.08074 -38.85540 -35.79911 -33.03752 -32.50600 -30.93601 -30.46371 -28.05052 -26.28935 -25.05655 -22.49554 -21.75092 -21.13881 -20.03749 -19.02388 -17.15102 -16.66805 -15.84888 -15.55064 -15.15647 -14.59034 -14.33344 -14.08966 -13.82898 -13.30716 -13.05907 -12.74973 -12.45106 -12.24159 -12.12679 -11.79239 -11.42727 -11.15639 -11.02909 -10.80326 -10.71605 -10.19339 -9.92959 -9.83754 -9.38205 -9.28336 -8.90425 -8.53345 -7.88046 -7.50191 -6.16838 -4.18170 2.32671 3.21394 3.28437 3.34855 3.40907 3.52333 4.37026 4.55011 4.71015 5.14990 5.18410 5.48173 5.55018 5.56995 5.66420 5.74566 5.77101 5.86680 5.96977 6.13205 6.27872 6.31688 6.33010 6.41502 6.45047 6.48907 6.59461 6.66716 6.84500 7.04128 7.08674 7.32902 7.65976 7.86047 7.90175 7.95808 8.54540 8.91909 9.47370 10.94872 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.014417 C = 0.010391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.897912 B = 1941.719615 C = 2693.959933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.173 3.827 3 H 0.124 0.876 4 C -0.005 4.005 5 C -0.209 4.209 6 C -0.207 4.207 7 C -0.071 4.071 8 O -0.174 6.174 9 N -0.516 5.516 10 C 0.003 3.997 11 C 0.069 3.931 12 O -0.404 6.404 13 C 0.067 3.933 14 C 0.154 3.846 15 H 0.021 0.979 16 C -0.509 4.509 17 H 0.083 0.917 18 C 0.086 3.914 19 N -0.890 5.890 20 Si 0.855 3.145 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.263 1.263 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.191 0.809 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 -6.520 -2.436 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.064 3.936 3 H 0.142 0.858 4 C -0.057 4.057 5 C -0.229 4.229 6 C -0.227 4.227 7 C -0.138 4.138 8 O -0.070 6.070 9 N -0.240 5.240 10 C -0.125 4.125 11 C -0.008 4.008 12 O -0.323 6.323 13 C -0.009 4.009 14 C 0.048 3.952 15 H 0.039 0.961 16 C -0.547 4.547 17 H 0.101 0.899 18 C -0.118 4.118 19 N -0.527 5.527 20 Si 0.682 3.318 21 H -0.191 1.191 22 H -0.215 1.215 23 H -0.188 1.188 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.208 0.792 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.064 -6.513 -1.845 11.313 hybrid contribution 0.944 -0.874 -1.630 2.076 sum -8.121 -7.387 -3.474 11.514 Atomic orbital electron populations 1.22003 0.94486 1.01719 1.02316 1.20537 0.93473 0.98444 0.81126 0.85837 1.23765 1.03015 0.80038 0.98870 1.21501 1.06773 1.00296 0.94286 1.21708 1.06793 0.92668 1.01491 1.23837 1.05403 0.99887 0.84680 1.84111 1.65261 1.25255 1.32371 1.62509 1.07725 1.18215 1.35544 1.23007 0.99177 0.91917 0.98398 1.22476 0.82369 0.99541 0.96420 1.87870 1.17728 1.32539 1.94176 1.23219 0.95980 0.83053 0.98679 1.20356 0.83692 0.97474 0.93722 0.96128 1.20751 1.08158 0.92754 1.33049 0.89873 1.24888 0.96542 0.95260 0.95109 1.69874 1.19591 1.22603 1.40636 0.87158 0.78553 0.84544 0.81532 1.19121 1.21466 1.18767 0.92806 0.91063 0.92231 0.83895 0.84395 0.79237 0.93359 0.90626 0.89964 0.93152 0.92943 0.89728 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.32 37.16 0.31 -1.88 16 2 C 0.17 3.32 2.56 -68.86 -0.18 3.14 16 3 H 0.12 2.60 7.30 -51.93 -0.38 2.22 16 4 C 0.00 -0.10 4.49 -35.63 -0.16 -0.26 16 5 C -0.21 -4.13 10.80 -39.70 -0.43 -4.56 16 6 C -0.21 -3.76 10.91 -39.70 -0.43 -4.19 16 7 C -0.07 -1.24 12.09 29.42 0.36 -0.89 16 8 O -0.17 -3.44 7.46 5.70 0.04 -3.40 16 9 N -0.52 -10.60 4.61 -221.17 -1.02 -11.62 16 10 C 0.00 0.06 4.81 -3.71 -0.02 0.04 16 11 C 0.07 1.20 7.01 37.21 0.26 1.46 16 12 O -0.40 -8.55 10.83 -35.23 -0.38 -8.93 16 13 C 0.07 1.53 6.14 37.21 0.23 1.75 16 14 C 0.15 3.67 1.07 -68.75 -0.07 3.59 16 15 H 0.02 0.54 3.85 -51.93 -0.20 0.34 16 16 C -0.51 -13.67 7.65 -34.44 -0.26 -13.93 16 17 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 18 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 19 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 20 Si 0.86 21.72 26.60 -169.99 -4.52 17.19 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.26 -6.66 6.29 56.52 0.36 -6.30 16 24 H 0.05 0.76 6.67 -51.93 -0.35 0.42 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.14 2.71 8.06 -52.49 -0.42 2.29 16 28 H 0.14 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 30 H 0.05 0.93 5.64 -51.93 -0.29 0.64 16 31 H 0.08 1.15 6.19 -51.93 -0.32 0.82 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.97 7.30 -51.93 -0.38 1.59 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 283.48 15.07 4.27 4.27 Total: -1.00 -30.59 283.48 -6.24 -36.82 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.91 Total: 4.53 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.50 Total: -13.41 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.25 Total: -37.08 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.34 Total: -12.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.52 Total: 17.19 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.59 -6.24 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.433 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds