Wall clock time and date at job start Mon Mar 30 2020 04:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46948 * 2 1 4 4 C 1.53001 * 109.46869 * 240.00200 * 2 1 3 5 5 H 1.08999 * 109.46579 * 174.63731 * 4 2 1 6 6 C 1.50696 * 109.46927 * 294.63316 * 4 2 1 7 7 H 1.08003 * 119.99716 * 114.70085 * 6 4 2 8 8 C 1.37879 * 120.00132 * 294.70522 * 6 4 2 9 9 N 1.31509 * 119.99926 * 353.50737 * 8 6 4 10 10 Si 1.86807 * 119.99940 * 173.51559 * 8 6 4 11 11 H 1.48497 * 109.47242 * 59.99417 * 10 8 6 12 12 H 1.48498 * 109.47012 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46586 * 299.99523 * 10 8 6 14 14 N 1.46502 * 109.47325 * 54.63609 * 4 2 1 15 15 C 1.34775 * 120.00105 * 85.00045 * 14 4 2 16 16 O 1.21283 * 119.99812 * 0.02562 * 15 14 4 17 17 C 1.50692 * 120.00046 * 179.97438 * 15 14 4 18 18 C 1.50698 * 109.47179 * 179.97438 * 17 15 14 19 19 C 1.34518 * 125.78924 * 89.99762 * 18 17 15 20 20 C 1.41388 * 106.83949 * 179.97438 * 19 18 17 21 21 C 1.34507 * 106.84403 * 0.02562 * 20 19 18 22 22 O 1.34302 * 125.79039 * 269.69235 * 18 17 15 23 23 H 1.09005 * 109.47331 * 60.00014 * 1 2 3 24 24 H 1.08992 * 109.47206 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47420 * 300.00170 * 1 2 3 26 26 H 1.08991 * 109.46963 * 119.99579 * 2 1 3 27 27 H 1.09002 * 109.47535 * 66.63950 * 3 2 1 28 28 H 1.08999 * 109.47229 * 186.64119 * 3 2 1 29 29 H 1.09005 * 109.47038 * 306.63761 * 3 2 1 30 30 H 0.97002 * 119.99765 * 180.02562 * 9 8 6 31 31 H 0.96993 * 119.99636 * 264.99622 * 14 4 2 32 32 H 1.09005 * 109.47257 * 299.99935 * 17 15 14 33 33 H 1.09003 * 109.47062 * 59.99947 * 17 15 14 34 34 H 1.08001 * 126.58019 * 0.04307 * 19 18 17 35 35 H 1.07999 * 126.57666 * 179.97438 * 20 19 18 36 36 H 1.07995 * 125.79596 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 3.1257 -0.6388 -1.2986 6 6 1.6490 -2.1752 -1.1846 7 1 0.9547 -2.5802 -1.9060 8 6 2.1776 -2.9883 -0.2046 9 7 3.1174 -2.5305 0.5933 10 14 1.5590 -4.7402 -0.0105 11 1 1.7987 -5.4921 -1.2684 12 1 2.2831 -5.4000 1.1057 13 1 0.1039 -4.7213 0.2854 14 7 1.4490 -0.1092 -2.4420 15 6 2.0207 0.9791 -2.9945 16 8 3.0247 1.4514 -2.5047 17 6 1.4132 1.6083 -4.2217 18 6 2.2370 2.8006 -4.6350 19 6 3.2801 2.7798 -5.4840 20 6 3.7527 4.1086 -5.5848 21 6 2.9706 4.8617 -4.7910 22 8 2.0505 4.0651 -4.2226 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.7769 1.9210 0.9434 28 1 3.1234 1.4449 -0.1188 29 1 1.5828 1.9895 -0.8247 30 1 3.4896 -3.1027 1.2826 31 1 0.6464 -0.4872 -2.8339 32 1 1.3953 0.8799 -5.0325 33 1 0.3956 1.9296 -3.9993 34 1 3.6793 1.9144 -5.9922 35 1 4.5831 4.4526 -6.1836 36 1 3.0631 5.9271 -4.6402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259697481.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:50 Heat of formation + Delta-G solvation = -35.321367 kcal Electronic energy + Delta-G solvation = -18762.401082 eV Core-core repulsion = 15827.014850 eV Total energy + Delta-G solvation = -2935.386232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34959 -39.03037 -35.72207 -32.94407 -32.44249 -32.11420 -31.42340 -27.55651 -26.38473 -25.88944 -22.85123 -21.56659 -20.82751 -19.78492 -18.48062 -17.42819 -16.93586 -16.01920 -15.36785 -15.06548 -15.01566 -14.35688 -13.84411 -13.53905 -12.95412 -12.64564 -12.55881 -12.47769 -12.41546 -12.19638 -11.56458 -11.34699 -11.09308 -10.98436 -10.93505 -10.32968 -10.17594 -9.93639 -9.71557 -9.57153 -9.07460 -9.02143 -8.49262 -8.22757 -7.79547 -6.13185 -4.19044 1.91907 2.80606 3.14469 3.25437 3.31644 3.32118 3.41185 4.17926 4.41738 4.78523 5.16565 5.19844 5.20343 5.43575 5.51075 5.59790 5.97210 6.09838 6.21950 6.25316 6.28275 6.35784 6.57703 6.68496 6.79740 6.93727 7.08128 7.31530 7.32778 7.43358 7.45733 7.62364 7.71836 7.85187 8.10970 8.66789 8.79778 9.14505 9.46630 10.94613 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.036731 B = 0.005367 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.114102 B = 5215.550822 C = 5459.029437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.131 4.131 4 C 0.276 3.724 5 H 0.054 0.946 6 C -0.531 4.531 7 H 0.060 0.940 8 C 0.070 3.930 9 N -0.881 5.881 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.706 5.706 15 C 0.501 3.499 16 O -0.538 6.538 17 C -0.068 4.068 18 C 0.022 3.978 19 C -0.205 4.205 20 C -0.212 4.212 21 C -0.048 4.048 22 O -0.173 6.173 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.023 0.977 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 8.950 -9.366 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 C -0.188 4.188 4 C 0.174 3.826 5 H 0.072 0.928 6 C -0.570 4.570 7 H 0.078 0.922 8 C -0.134 4.134 9 N -0.518 5.518 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 N -0.354 5.354 15 C 0.285 3.715 16 O -0.415 6.415 17 C -0.108 4.108 18 C -0.029 4.029 19 C -0.224 4.224 20 C -0.232 4.232 21 C -0.115 4.115 22 O -0.069 6.069 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.587 9.298 -8.618 13.175 hybrid contribution -0.445 -1.103 -0.135 1.197 sum -4.032 8.195 -8.754 12.650 Atomic orbital electron populations 1.21651 0.97418 1.00984 0.98399 1.21460 0.94023 0.94057 1.02342 1.21863 1.01366 0.97440 0.98174 1.18784 0.94945 0.90326 0.78541 0.92801 1.21096 1.27869 0.93369 1.14646 0.92191 1.24861 0.94387 0.98434 0.95729 1.69950 1.25219 1.36895 1.19698 0.86604 0.79026 0.84281 0.77777 1.20252 1.21212 1.20121 1.46401 1.29598 1.28332 1.31033 1.20080 0.85159 0.81592 0.84708 1.90708 1.25173 1.62450 1.63198 1.20235 0.99289 0.92254 0.99068 1.21629 0.99580 0.83556 0.98147 1.21485 0.98605 0.98172 1.04124 1.21749 1.03257 0.93651 1.04514 1.23893 0.92062 0.96669 0.98900 1.83986 1.47887 1.17575 1.57460 0.94783 0.92288 0.95478 0.89228 0.95793 0.92779 0.94455 0.92533 0.77950 0.86509 0.87832 0.83750 0.83784 0.78469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.79 37.16 0.33 -2.24 16 2 C -0.10 -2.30 2.63 -90.62 -0.24 -2.54 16 3 C -0.13 -2.92 7.68 37.16 0.29 -2.64 16 4 C 0.28 6.68 1.80 -69.08 -0.12 6.56 16 5 H 0.05 1.56 7.55 -51.93 -0.39 1.17 16 6 C -0.53 -13.48 7.67 -34.44 -0.26 -13.74 16 7 H 0.06 1.45 7.73 -52.48 -0.41 1.05 16 8 C 0.07 1.83 5.21 -17.82 -0.09 1.74 16 9 N -0.88 -24.53 12.01 55.43 0.67 -23.86 16 10 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 N -0.71 -13.85 4.04 -54.94 -0.22 -14.07 16 15 C 0.50 9.61 6.47 -10.99 -0.07 9.54 16 16 O -0.54 -12.62 13.06 5.55 0.07 -12.54 16 17 C -0.07 -0.96 6.23 -29.04 -0.18 -1.15 16 18 C 0.02 0.34 5.81 -35.62 -0.21 0.13 16 19 C -0.20 -3.04 10.81 -39.70 -0.43 -3.47 16 20 C -0.21 -2.81 10.91 -39.70 -0.43 -3.24 16 21 C -0.05 -0.62 12.09 29.41 0.36 -0.26 16 22 O -0.17 -2.75 10.65 5.68 0.06 -2.69 16 23 H 0.03 0.62 7.47 -51.93 -0.39 0.23 16 24 H 0.06 1.23 7.39 -51.93 -0.38 0.85 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 2.35 6.66 -51.93 -0.35 2.00 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.31 7.49 -51.93 -0.39 0.93 16 29 H 0.04 0.81 6.24 -51.93 -0.32 0.48 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 6.48 8.53 -40.82 -0.35 6.13 16 32 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -31.08 300.81 -6.06 -37.13 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.07 Total: 7.57 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.07 Total: -11.30 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.44 Total: -37.93 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.13 Total: -15.23 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.08 -6.06 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697481.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.812 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds