Wall clock time and date at job start Mon Mar 30 2020 04:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99804 * 2 1 3 5 5 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 6 6 C 1.50698 * 109.47184 * 65.00358 * 4 2 1 7 7 H 1.08003 * 120.00057 * 240.00090 * 6 4 2 8 8 C 1.37876 * 120.00356 * 59.99290 * 6 4 2 9 9 N 1.31519 * 119.99989 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00260 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46926 * 60.00146 * 10 8 6 12 12 H 1.48500 * 109.47454 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 300.00528 * 10 8 6 14 14 N 1.46492 * 109.47363 * 304.99889 * 4 2 1 15 15 C 1.34779 * 120.00234 * 275.00260 * 14 4 2 16 16 O 1.21283 * 119.99840 * 359.97438 * 15 14 4 17 17 C 1.50701 * 120.00108 * 179.97438 * 15 14 4 18 18 C 1.50697 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.34517 * 125.79337 * 89.71625 * 18 17 15 20 20 C 1.41384 * 106.84074 * 179.88689 * 19 18 17 21 21 C 1.34519 * 106.84034 * 0.37429 * 20 19 18 22 22 O 1.34306 * 108.42215 * 359.76985 * 21 20 19 23 23 H 1.09001 * 109.47273 * 300.00044 * 1 2 3 24 24 H 1.09002 * 109.46911 * 60.00115 * 1 2 3 25 25 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46828 * 239.99768 * 2 1 3 27 27 H 1.09001 * 109.47018 * 59.99799 * 3 2 1 28 28 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47069 * 299.99788 * 3 2 1 30 30 H 0.96996 * 119.99885 * 179.97438 * 9 8 6 31 31 H 0.97005 * 120.00153 * 94.99794 * 14 4 2 32 32 H 1.08997 * 109.46862 * 299.99840 * 17 15 14 33 33 H 1.08993 * 109.46756 * 60.00116 * 17 15 14 34 34 H 1.07999 * 126.57700 * 0.02670 * 19 18 17 35 35 H 1.07999 * 126.57820 * 180.16848 * 20 19 18 36 36 H 1.08004 * 125.78730 * 179.74741 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1263 -0.6444 1.2953 6 6 1.6413 -2.1733 1.1890 7 1 1.0153 -2.5940 1.9620 8 6 2.0755 -2.9647 0.1468 9 7 2.8381 -2.4526 -0.7944 10 14 1.5808 -4.7644 0.0717 11 1 0.1008 -4.8687 0.0088 12 1 2.1735 -5.3907 -1.1374 13 1 2.0752 -5.4648 1.2843 14 7 1.4558 -0.1036 2.4424 15 6 2.0348 0.9828 2.9909 16 8 3.0397 1.4489 2.4971 17 6 1.4336 1.6185 4.2179 18 6 2.2649 2.8072 4.6263 19 6 2.0912 4.0718 4.2019 20 6 3.0830 4.8561 4.8347 21 6 3.8085 4.0224 5.6015 22 8 3.3085 2.7827 5.4714 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1439 -3.0094 -1.5273 31 1 0.6523 -0.4766 2.8376 32 1 0.4173 1.9449 3.9971 33 1 1.4135 0.8923 5.0305 34 1 1.3374 4.4214 3.5121 35 1 3.2317 5.9197 4.7213 36 1 4.6506 4.3024 6.2171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259697482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:53 Heat of formation + Delta-G solvation = -33.079626 kcal Electronic energy + Delta-G solvation = -18775.871723 eV Core-core repulsion = 15840.582701 eV Total energy + Delta-G solvation = -2935.289022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.35256 -39.05001 -35.72036 -32.94684 -32.46694 -32.06203 -31.40474 -27.55840 -26.37577 -25.85560 -22.86537 -21.56800 -20.81739 -19.77597 -18.43697 -17.43151 -16.93614 -16.03568 -15.37984 -15.02631 -14.96527 -14.50657 -13.93818 -13.24936 -13.00753 -12.65015 -12.55462 -12.43878 -12.42770 -12.28026 -11.51970 -11.35707 -11.03980 -10.97182 -10.93602 -10.35961 -10.13344 -9.89659 -9.71810 -9.46867 -9.09864 -8.99520 -8.49384 -8.23196 -7.78249 -6.11198 -4.19882 1.91623 2.79941 3.14610 3.25342 3.31381 3.31876 3.40809 4.17562 4.41439 4.78174 5.16101 5.19488 5.20223 5.44330 5.50372 5.58983 5.96736 6.08902 6.26798 6.27729 6.30999 6.40244 6.62401 6.68043 6.82946 6.98242 7.11958 7.32543 7.33297 7.46591 7.48487 7.63867 7.73413 7.89343 8.20871 8.66153 8.78423 9.14016 9.46537 10.93897 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.005382 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.795488 B = 5201.175183 C = 5479.249509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C -0.132 4.132 4 C 0.277 3.723 5 H 0.048 0.952 6 C -0.529 4.529 7 H 0.060 0.940 8 C 0.068 3.932 9 N -0.882 5.882 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.277 1.277 14 N -0.705 5.705 15 C 0.501 3.499 16 O -0.538 6.538 17 C -0.069 4.069 18 C 0.022 3.978 19 C -0.204 4.204 20 C -0.213 4.213 21 C -0.047 4.047 22 O -0.173 6.173 23 H 0.030 0.970 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.022 0.978 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 9.148 9.251 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.126 4.126 3 C -0.189 4.189 4 C 0.175 3.825 5 H 0.066 0.934 6 C -0.568 4.568 7 H 0.078 0.922 8 C -0.135 4.135 9 N -0.519 5.519 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 N -0.353 5.353 15 C 0.285 3.715 16 O -0.416 6.416 17 C -0.109 4.109 18 C -0.029 4.029 19 C -0.224 4.224 20 C -0.232 4.232 21 C -0.115 4.115 22 O -0.069 6.069 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.132 9.143 8.825 13.088 hybrid contribution -0.624 -0.851 -0.032 1.056 sum -3.756 8.292 8.793 12.657 Atomic orbital electron populations 1.21626 0.97588 1.00872 0.98110 1.21551 0.93929 0.93884 1.03214 1.21879 1.00820 0.97735 0.98469 1.18767 0.94649 0.90347 0.78723 0.93428 1.21132 1.32849 0.93702 1.09107 0.92185 1.24853 0.94744 0.98626 0.95291 1.69872 1.34016 1.36072 1.11966 0.86559 0.78753 0.84568 0.77522 1.20180 1.21194 1.20248 1.46411 1.29483 1.28418 1.31036 1.20080 0.85177 0.81631 0.84660 1.90712 1.25107 1.62720 1.63020 1.20235 0.98159 0.94057 0.98418 1.21638 0.90357 0.95971 0.94957 1.21465 1.03415 0.92735 1.04743 1.21748 0.98879 1.00752 1.01846 1.23904 1.01548 0.81371 1.04652 1.83991 1.38481 1.31582 1.52801 0.95071 0.95611 0.92362 0.87569 0.94160 0.93330 0.95896 0.92531 0.77913 0.86615 0.87703 0.83808 0.83789 0.78451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.79 37.16 0.33 -2.21 16 2 C -0.11 -2.47 2.59 -90.62 -0.23 -2.71 16 3 C -0.13 -2.93 7.79 37.16 0.29 -2.64 16 4 C 0.28 6.73 1.94 -69.08 -0.13 6.59 16 5 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 6 C -0.53 -13.45 7.71 -34.44 -0.27 -13.72 16 7 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 8 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 9 N -0.88 -24.30 11.30 55.43 0.63 -23.68 16 10 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 N -0.71 -13.89 4.04 -54.93 -0.22 -14.11 16 15 C 0.50 9.62 6.39 -10.98 -0.07 9.55 16 16 O -0.54 -12.63 13.18 5.55 0.07 -12.56 16 17 C -0.07 -0.97 6.23 -29.04 -0.18 -1.15 16 18 C 0.02 0.34 5.81 -35.62 -0.21 0.13 16 19 C -0.20 -3.01 10.81 -39.70 -0.43 -3.44 16 20 C -0.21 -2.81 10.91 -39.70 -0.43 -3.24 16 21 C -0.05 -0.61 12.09 29.42 0.36 -0.26 16 22 O -0.17 -2.77 10.65 5.69 0.06 -2.71 16 23 H 0.03 0.56 7.47 -51.93 -0.39 0.18 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 1.24 7.38 -51.92 -0.38 0.86 16 26 H 0.11 2.81 5.95 -51.93 -0.31 2.50 16 27 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 28 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.52 8.54 -40.82 -0.35 6.17 16 32 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -30.91 299.59 -6.07 -36.98 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.02 Total: 7.69 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.08 Total: -11.39 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.40 Total: -37.78 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.13 Total: -15.26 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.91 -6.07 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.903 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds