Wall clock time and date at job start Mon Mar 30 2020 04:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99804 * 2 1 3 5 5 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 6 6 C 1.50698 * 109.47184 * 65.00358 * 4 2 1 7 7 H 1.08003 * 120.00057 * 240.00090 * 6 4 2 8 8 C 1.37876 * 120.00356 * 59.99290 * 6 4 2 9 9 N 1.31519 * 119.99989 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00260 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46926 * 60.00146 * 10 8 6 12 12 H 1.48500 * 109.47454 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 300.00528 * 10 8 6 14 14 N 1.46492 * 109.47363 * 304.99889 * 4 2 1 15 15 C 1.34779 * 120.00234 * 275.00260 * 14 4 2 16 16 O 1.21283 * 119.99840 * 359.97438 * 15 14 4 17 17 C 1.50701 * 120.00108 * 179.97438 * 15 14 4 18 18 C 1.50697 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.34517 * 125.79337 * 89.71625 * 18 17 15 20 20 C 1.41384 * 106.84074 * 179.88689 * 19 18 17 21 21 C 1.34519 * 106.84034 * 0.37429 * 20 19 18 22 22 O 1.34306 * 108.42215 * 359.76985 * 21 20 19 23 23 H 1.09001 * 109.47273 * 300.00044 * 1 2 3 24 24 H 1.09002 * 109.46911 * 60.00115 * 1 2 3 25 25 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46828 * 239.99768 * 2 1 3 27 27 H 1.09001 * 109.47018 * 59.99799 * 3 2 1 28 28 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47069 * 299.99788 * 3 2 1 30 30 H 0.96996 * 119.99885 * 179.97438 * 9 8 6 31 31 H 0.97005 * 120.00153 * 94.99794 * 14 4 2 32 32 H 1.08997 * 109.46862 * 299.99840 * 17 15 14 33 33 H 1.08993 * 109.46756 * 60.00116 * 17 15 14 34 34 H 1.07999 * 126.57700 * 0.02670 * 19 18 17 35 35 H 1.07999 * 126.57820 * 180.16848 * 20 19 18 36 36 H 1.08004 * 125.78730 * 179.74741 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1263 -0.6444 1.2953 6 6 1.6413 -2.1733 1.1890 7 1 1.0153 -2.5940 1.9620 8 6 2.0755 -2.9647 0.1468 9 7 2.8381 -2.4526 -0.7944 10 14 1.5808 -4.7644 0.0717 11 1 0.1008 -4.8687 0.0088 12 1 2.1735 -5.3907 -1.1374 13 1 2.0752 -5.4648 1.2843 14 7 1.4558 -0.1036 2.4424 15 6 2.0348 0.9828 2.9909 16 8 3.0397 1.4489 2.4971 17 6 1.4336 1.6185 4.2179 18 6 2.2649 2.8072 4.6263 19 6 2.0912 4.0718 4.2019 20 6 3.0830 4.8561 4.8347 21 6 3.8085 4.0224 5.6015 22 8 3.3085 2.7827 5.4714 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1439 -3.0094 -1.5273 31 1 0.6523 -0.4766 2.8376 32 1 0.4173 1.9449 3.9971 33 1 1.4135 0.8923 5.0305 34 1 1.3374 4.4214 3.5121 35 1 3.2317 5.9197 4.7213 36 1 4.6506 4.3024 6.2171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259697482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:53 Heat of formation + Delta-G solvation = -52.883046 kcal Electronic energy + Delta-G solvation = -18776.730464 eV Core-core repulsion = 15840.582701 eV Total energy + Delta-G solvation = -2936.147763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.42231 -40.67743 -37.50742 -34.29614 -34.07910 -33.74160 -32.68719 -29.21086 -27.90780 -27.47587 -24.73423 -22.62739 -22.20281 -21.10432 -20.23648 -18.98492 -18.12880 -17.62389 -16.98921 -16.58551 -16.50808 -15.94771 -15.42113 -14.72529 -14.62800 -14.31856 -14.10715 -13.69368 -13.66091 -13.49314 -13.22966 -12.90759 -12.76862 -12.73597 -12.53948 -12.19712 -11.93533 -11.70796 -11.31232 -10.94156 -10.79754 -10.67996 -10.46095 -9.53839 -9.31978 -8.10574 -6.26351 0.83012 1.46938 1.47976 1.55334 1.74936 1.89203 2.15594 2.41654 2.82931 3.19179 3.72165 4.17889 4.20647 4.22195 4.43664 4.50283 4.50754 4.53818 4.60410 4.93418 4.96955 5.06180 5.07123 5.16809 5.26112 5.32460 5.45040 5.60612 5.67957 5.69929 5.75908 5.85483 6.01657 6.26680 6.27198 6.80929 7.04545 7.39688 7.65714 8.94127 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.005382 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.795488 B = 5201.175183 C = 5479.249509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 C -0.118 4.118 4 C 0.285 3.715 5 H -0.012 1.012 6 C -0.536 4.536 7 H 0.072 0.928 8 C 0.018 3.982 9 N -0.916 5.916 10 Si 0.963 3.037 11 H -0.263 1.263 12 H -0.291 1.291 13 H -0.274 1.274 14 N -0.700 5.700 15 C 0.497 3.503 16 O -0.586 6.586 17 C -0.055 4.055 18 C -0.011 4.011 19 C -0.213 4.213 20 C -0.226 4.226 21 C -0.049 4.049 22 O -0.196 6.196 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.015 0.985 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.406 0.594 32 H 0.154 0.846 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 9.591 10.615 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.175 4.175 4 C 0.182 3.818 5 H 0.006 0.994 6 C -0.574 4.574 7 H 0.090 0.910 8 C -0.182 4.182 9 N -0.555 5.555 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.217 1.217 13 H -0.199 1.199 14 N -0.349 5.349 15 C 0.283 3.717 16 O -0.467 6.467 17 C -0.094 4.094 18 C -0.061 4.061 19 C -0.232 4.232 20 C -0.245 4.245 21 C -0.115 4.115 22 O -0.093 6.093 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.242 0.758 32 H 0.172 0.828 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.066 9.587 10.225 14.904 hybrid contribution 0.053 -0.904 -0.423 1.000 sum -5.012 8.683 9.802 14.022 Atomic orbital electron populations 1.21496 0.94759 1.00806 1.00035 1.21413 0.96228 0.93740 1.01157 1.21720 0.98631 0.97490 0.99665 1.18311 0.91545 0.90878 0.81076 0.99393 1.21463 1.32476 0.94338 1.09118 0.90965 1.25681 0.94736 1.02730 0.95043 1.70050 1.35356 1.37455 1.12624 0.85533 0.78953 0.79499 0.77157 1.18748 1.21663 1.19913 1.46155 1.30042 1.28687 1.30019 1.20977 0.84336 0.80790 0.85555 1.90696 1.27306 1.63948 1.64739 1.20231 0.99100 0.94036 0.96034 1.21957 0.91181 0.96813 0.96114 1.21833 1.03914 0.92936 1.04559 1.22148 0.98545 1.02122 1.01699 1.24751 1.01934 0.80386 1.04464 1.83976 1.38931 1.33129 1.53286 0.92677 0.94096 0.93381 0.91096 0.93359 0.96586 0.94016 0.92862 0.75842 0.82841 0.85255 0.82694 0.81296 0.74824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.79 71.98 0.63 -3.80 16 2 C -0.11 -4.98 2.59 -10.79 -0.03 -5.01 16 3 C -0.12 -5.29 7.79 71.98 0.56 -4.73 16 4 C 0.29 14.17 1.94 44.25 0.09 14.26 16 5 H -0.01 -0.72 7.58 -2.39 -0.02 -0.74 16 6 C -0.54 -27.27 7.71 25.60 0.20 -27.08 16 7 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 8 C 0.02 0.95 5.29 84.65 0.45 1.40 16 9 N -0.92 -52.14 11.30 21.45 0.24 -51.90 16 10 Si 0.96 41.51 29.54 68.60 2.03 43.53 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 N -0.70 -27.01 4.04 -446.10 -1.80 -28.81 16 15 C 0.50 18.77 6.39 87.66 0.56 19.33 16 16 O -0.59 -28.13 13.18 -3.04 -0.04 -28.17 16 17 C -0.05 -1.42 6.23 29.10 0.18 -1.24 16 18 C -0.01 -0.32 5.81 24.83 0.14 -0.17 16 19 C -0.21 -5.94 10.81 22.19 0.24 -5.70 16 20 C -0.23 -5.52 10.91 22.19 0.24 -5.28 16 21 C -0.05 -1.17 12.09 66.97 0.81 -0.36 16 22 O -0.20 -6.08 10.65 -2.57 -0.03 -6.11 16 23 H 0.05 1.86 7.47 -2.39 -0.02 1.84 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.96 7.38 -2.38 -0.02 1.94 16 26 H 0.07 3.89 5.95 -2.39 -0.01 3.88 16 27 H 0.05 2.06 5.65 -2.39 -0.01 2.05 16 28 H 0.01 0.77 7.85 -2.39 -0.02 0.75 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.41 12.74 8.54 -92.70 -0.79 11.95 16 32 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 35 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.24 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -70.03 299.59 4.76 -65.27 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.29 Total: 24.57 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.07 Total: -18.38 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.56 Total: -80.71 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.07 Total: -34.28 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -70.03 4.76 -65.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.387 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds