Wall clock time and date at job start Mon Mar 30 2020 04:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47065 * 2 1 4 4 H 1.08997 * 109.47568 * 176.61879 * 3 2 1 5 5 C 1.50706 * 109.47003 * 56.62215 * 3 2 1 6 6 H 1.08005 * 119.99506 * 240.00140 * 5 3 2 7 7 C 1.37870 * 120.00493 * 59.99798 * 5 3 2 8 8 N 1.31519 * 119.99505 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00436 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47097 * 89.99770 * 9 7 5 11 11 H 1.48501 * 109.47146 * 210.00182 * 9 7 5 12 12 H 1.48500 * 109.46911 * 330.00085 * 9 7 5 13 13 C 1.53002 * 109.47420 * 296.62201 * 3 2 1 14 14 N 1.46501 * 109.46660 * 294.61180 * 13 3 2 15 15 C 1.34780 * 119.99660 * 176.42561 * 14 13 3 16 16 O 1.21278 * 120.00081 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99854 * 179.97438 * 15 14 13 18 18 C 1.50699 * 109.47207 * 179.97438 * 17 15 14 19 19 C 1.34519 * 125.78415 * 89.71556 * 18 17 15 20 20 C 1.41383 * 106.83748 * 179.88991 * 19 18 17 21 21 C 1.34516 * 106.84241 * 0.37529 * 20 19 18 22 22 O 1.34303 * 125.79352 * 270.02831 * 18 17 15 23 23 H 1.08995 * 109.46996 * 185.30219 * 1 2 3 24 24 H 1.08999 * 109.47471 * 65.30422 * 1 2 3 25 25 H 1.09000 * 109.47458 * 305.30399 * 1 2 3 26 26 H 1.08995 * 109.47321 * 119.99923 * 2 1 3 27 27 H 1.09004 * 109.47354 * 240.00277 * 2 1 3 28 28 H 0.97000 * 119.99707 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.46983 * 54.60788 * 13 3 2 30 30 H 1.08998 * 109.46916 * 174.61065 * 13 3 2 31 31 H 0.97002 * 120.00151 * 356.42104 * 14 13 3 32 32 H 1.09003 * 109.47366 * 300.00166 * 17 15 14 33 33 H 1.09007 * 109.46917 * 59.99914 * 17 15 14 34 34 H 1.08000 * 126.58162 * 0.03240 * 19 18 17 35 35 H 1.08000 * 126.57781 * 180.16664 * 20 19 18 36 36 H 1.07994 * 125.79253 * 179.74838 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1282 1.4432 0.0606 5 6 1.4704 2.1767 1.1865 6 1 0.8564 3.0523 1.0358 7 6 1.7330 1.7306 2.4643 8 7 2.4803 0.6639 2.6478 9 14 1.0265 2.6401 3.9349 10 1 -0.3023 2.0719 4.2767 11 1 1.9416 2.4918 5.0951 12 1 0.8784 4.0797 3.6021 13 6 1.6006 2.1389 -1.2896 14 7 2.2570 1.5042 -2.4352 15 6 1.9639 1.9066 -3.6877 16 8 1.1565 2.7937 -3.8663 17 6 2.6396 1.2541 -4.8662 18 6 2.1398 1.8811 -6.1422 19 6 2.6766 2.9512 -6.7556 20 6 1.8992 3.1935 -7.9114 21 6 0.9288 2.2621 -7.9307 22 8 1.0795 1.4700 -6.8567 23 1 -0.3633 -1.0232 0.0950 24 1 -0.3634 0.4293 -0.9336 25 1 -0.3634 0.5939 0.8387 26 1 1.8933 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.6654 0.3502 3.5468 29 1 0.5193 2.0545 -1.3978 30 1 1.8805 3.1915 -1.2476 31 1 2.9026 0.7945 -2.2924 32 1 3.7179 1.3941 -4.7902 33 1 2.4111 0.1883 -4.8717 34 1 3.5378 3.5154 -6.4293 35 1 2.0527 3.9781 -8.6375 36 1 0.1589 2.1676 -8.6821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259782667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:22 Heat of formation + Delta-G solvation = -38.240079 kcal Electronic energy + Delta-G solvation = -18080.424322 eV Core-core repulsion = 15144.911525 eV Total energy + Delta-G solvation = -2935.512796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.51473 -39.20514 -36.08949 -33.32436 -33.10232 -32.06087 -31.15997 -28.23451 -26.92854 -24.61568 -23.07187 -21.72621 -20.97518 -19.91508 -19.05403 -17.38441 -17.03899 -15.98809 -15.53174 -15.39237 -15.12755 -14.55544 -14.27814 -13.72041 -13.24385 -13.01474 -12.79731 -12.70897 -12.67308 -12.11320 -11.77067 -11.58913 -11.28310 -10.95099 -10.68707 -10.52162 -9.96595 -9.87361 -9.68734 -9.55764 -9.23701 -8.89390 -8.48771 -8.41075 -8.30986 -6.06003 -4.11022 1.74596 2.63921 2.93225 3.03031 3.28048 3.35199 3.38858 3.79953 4.40765 4.58743 4.99430 5.04368 5.16938 5.25772 5.26282 5.33628 5.81371 5.93493 6.10039 6.19836 6.28567 6.42625 6.50740 6.53059 6.69972 6.76640 6.92337 7.00034 7.16428 7.38766 7.48495 7.67317 7.77856 7.99539 8.06518 8.32842 8.64144 8.90706 9.52998 11.00279 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.048081 B = 0.004057 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.214944 B = 6900.366547 C = 7038.474642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.038 3.962 4 H 0.031 0.969 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.123 3.877 14 N -0.717 5.717 15 C 0.505 3.495 16 O -0.541 6.541 17 C -0.065 4.065 18 C 0.014 3.986 19 C -0.201 4.201 20 C -0.214 4.214 21 C -0.044 4.044 22 O -0.173 6.173 23 H 0.022 0.978 24 H 0.030 0.970 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.398 0.602 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -1.044 -15.972 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.019 3.981 4 H 0.049 0.951 5 C -0.547 4.547 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.001 3.999 14 N -0.368 5.368 15 C 0.289 3.711 16 O -0.419 6.419 17 C -0.105 4.105 18 C -0.036 4.036 19 C -0.220 4.220 20 C -0.233 4.233 21 C -0.111 4.111 22 O -0.068 6.068 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.040 -0.749 -15.838 15.889 hybrid contribution -0.006 0.318 0.808 0.868 sum 1.034 -0.431 -15.030 15.072 Atomic orbital electron populations 1.21660 0.97940 0.98582 1.00879 1.21503 0.94597 0.99029 0.99945 1.18963 0.96757 0.92411 0.89954 0.95099 1.20941 1.31622 1.11932 0.90159 0.92462 1.24889 0.95016 0.94984 0.98789 1.69872 1.37772 1.23330 1.21720 0.86606 0.78918 0.80328 0.82277 1.20655 1.21263 1.19853 1.21811 0.96885 0.96432 0.84753 1.46256 1.44898 1.39702 1.05904 1.20274 0.82967 0.83626 0.84210 1.90713 1.34645 1.30931 1.85587 1.20167 1.01615 1.01551 0.87188 1.21579 0.89097 0.97939 0.95002 1.21506 1.04046 0.99040 0.97455 1.21777 0.98313 1.02485 1.00726 1.23946 1.02286 0.93685 0.91226 1.83988 1.41806 1.49530 1.31516 0.95886 0.95104 0.91595 0.89203 0.96859 0.92978 0.92044 0.92877 0.76799 0.86065 0.87244 0.83645 0.83631 0.78298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.31 37.16 0.35 -2.48 16 2 C -0.11 -2.48 5.36 -26.73 -0.14 -2.62 16 3 C 0.04 0.87 2.10 -91.77 -0.19 0.68 16 4 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.51 -13.19 7.05 -34.44 -0.24 -13.43 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.11 11.35 55.43 0.63 -23.48 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.12 2.56 4.85 -4.04 -0.02 2.54 16 14 N -0.72 -12.08 5.20 -60.29 -0.31 -12.39 16 15 C 0.50 8.48 7.82 -10.98 -0.09 8.39 16 16 O -0.54 -11.53 16.03 5.56 0.09 -11.45 16 17 C -0.07 -0.79 6.23 -29.04 -0.18 -0.97 16 18 C 0.01 0.20 5.81 -35.62 -0.21 0.00 16 19 C -0.20 -2.65 10.81 -39.70 -0.43 -3.08 16 20 C -0.21 -2.52 10.91 -39.70 -0.43 -2.95 16 21 C -0.04 -0.51 12.09 29.42 0.36 -0.15 16 22 O -0.17 -2.49 10.65 5.71 0.06 -2.43 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.03 0.62 6.67 -51.93 -0.35 0.27 16 25 H 0.07 1.53 6.92 -51.93 -0.36 1.17 16 26 H 0.09 2.23 6.17 -51.93 -0.32 1.91 16 27 H 0.01 0.25 7.21 -51.93 -0.37 -0.13 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.06 1.36 6.38 -51.93 -0.33 1.03 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.40 5.69 7.80 -40.82 -0.32 5.37 16 32 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -31.18 303.85 -6.28 -37.46 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.97 Total: 4.46 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.33 Total: -12.46 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.32 Total: -35.87 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.15 Total: -13.87 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.18 -6.28 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.778 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds