Wall clock time and date at job start Mon Mar 30 2020 03:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38258 * 119.92629 * 264.73048 * 3 2 1 5 5 C 1.38241 * 120.14550 * 179.72676 * 4 3 2 6 6 C 1.38564 * 119.99774 * 0.54288 * 5 4 3 7 7 O 1.35991 * 120.07105 * 179.74764 * 6 5 4 8 8 C 1.42896 * 117.00230 * 359.97438 * 7 6 5 9 9 C 1.39156 * 119.85649 * 359.73219 * 6 5 4 10 10 O 1.35990 * 120.07185 * 180.02562 * 9 6 5 11 11 C 1.38238 * 119.92523 * 85.00226 * 3 2 1 12 12 C 1.50697 * 120.00400 * 359.97438 * 11 3 2 13 13 H 1.09000 * 109.46835 * 15.00015 * 12 11 3 14 14 N 1.46904 * 109.47044 * 135.00149 * 12 11 3 15 15 C 1.50693 * 109.47387 * 255.00127 * 12 11 3 16 16 H 1.08000 * 120.00156 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00426 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00434 * 180.02562 * 17 15 12 19 19 Si 1.86799 * 119.99828 * 359.97438 * 17 15 12 20 20 H 1.48503 * 109.47068 * 90.00043 * 19 17 15 21 21 H 1.48490 * 109.47431 * 210.00359 * 19 17 15 22 22 H 1.48503 * 109.47043 * 330.00512 * 19 17 15 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 28 28 H 1.08000 * 119.92235 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99698 * 180.27420 * 5 4 3 30 30 H 1.08999 * 109.47674 * 59.99485 * 8 7 6 31 31 H 1.09001 * 109.47627 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.46935 * 299.99441 * 8 7 6 33 33 H 0.96705 * 113.99817 * 269.97352 * 10 9 6 34 34 H 1.00900 * 111.00067 * 60.00072 * 14 12 11 35 35 H 1.00902 * 110.99480 * 183.95567 * 14 12 11 36 36 H 0.97002 * 120.00018 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3659 2.0345 -1.1932 5 6 2.8218 3.3396 -1.1990 6 6 2.9559 4.0319 -0.0062 7 8 3.4090 5.3140 -0.0097 8 6 3.7291 5.8855 -1.2797 9 6 2.6255 3.4124 1.1953 10 8 2.7548 4.0879 2.3684 11 6 2.1637 2.1058 1.1935 12 6 1.8044 1.4320 2.4927 13 1 1.7219 0.3568 2.3335 14 7 2.8497 1.7008 3.4892 15 6 0.4869 1.9688 2.9894 16 1 -0.0381 2.7223 2.4210 17 6 -0.0490 1.4973 4.1691 18 7 -1.1991 1.9655 4.6023 19 14 0.8578 0.1925 5.1511 20 1 1.7736 0.8486 6.1187 21 1 -0.1235 -0.6440 5.8875 22 1 1.6445 -0.6643 4.2279 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.2664 1.4943 -2.1231 29 1 3.0775 3.8180 -2.1328 30 1 2.8410 5.8871 -1.9117 31 1 4.0780 6.9088 -1.1402 32 1 4.5130 5.2966 -1.7559 33 1 3.6220 3.9900 2.7851 34 1 2.9457 2.6915 3.6544 35 1 2.6646 1.2070 4.3495 36 1 -1.5763 1.6335 5.4321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:39 Heat of formation + Delta-G solvation = -73.348203 kcal Electronic energy + Delta-G solvation = -19279.531552 eV Core-core repulsion = 16342.496353 eV Total energy + Delta-G solvation = -2937.035199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.50841 -39.30666 -37.88954 -36.33668 -34.14319 -33.69221 -30.91550 -29.78506 -28.15815 -27.73468 -24.65525 -24.44597 -22.41439 -21.18712 -19.25850 -19.06247 -18.53800 -17.59013 -16.91541 -16.66799 -16.07700 -15.81867 -15.45090 -15.30987 -14.86498 -14.52284 -14.25305 -14.06702 -13.75170 -13.48754 -13.19522 -12.89110 -12.73356 -12.56973 -12.23778 -12.21751 -11.92084 -11.74300 -11.60539 -11.57597 -10.95369 -10.81798 -9.66149 -9.25959 -8.84837 -8.34122 -6.38881 0.41086 0.50738 1.23911 1.30983 1.40500 2.23194 2.40515 2.74246 2.99827 3.38519 3.89813 3.95519 4.15579 4.22768 4.38798 4.42418 4.43044 4.49976 4.64153 4.68416 4.73070 4.83941 4.95220 4.99654 5.19328 5.27547 5.33511 5.42991 5.49014 5.59609 5.82263 5.90773 6.12221 6.41108 6.42259 6.60613 6.74505 6.97610 7.23537 8.83091 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.008510 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.440670 B = 3289.612272 C = 3926.463180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.119 4.119 4 C -0.083 4.083 5 C -0.202 4.202 6 C 0.081 3.919 7 O -0.334 6.334 8 C 0.018 3.982 9 C 0.058 3.942 10 O -0.491 6.491 11 C -0.044 4.044 12 C 0.219 3.781 13 H 0.056 0.944 14 N -0.845 5.845 15 C -0.518 4.518 16 H 0.019 0.981 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.936 3.064 20 H -0.260 1.260 21 H -0.292 1.292 22 H -0.242 1.242 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.387 0.613 34 H 0.339 0.661 35 H 0.314 0.686 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -0.184 -12.919 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.220 4.220 6 C 0.036 3.964 7 O -0.248 6.248 8 C -0.077 4.077 9 C 0.013 3.987 10 O -0.300 6.300 11 C -0.045 4.045 12 C 0.110 3.890 13 H 0.074 0.926 14 N -0.385 5.385 15 C -0.558 4.558 16 H 0.037 0.963 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.185 1.185 21 H -0.219 1.219 22 H -0.166 1.166 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.178 0.822 29 H 0.179 0.821 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.244 0.756 34 H 0.158 0.842 35 H 0.129 0.871 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.180 -0.189 -13.263 17.348 hybrid contribution -0.629 0.191 1.518 1.654 sum 10.552 0.001 -11.745 15.789 Atomic orbital electron populations 1.21756 0.95352 1.01873 1.01598 1.20481 0.95795 0.91756 1.03050 1.19856 1.02211 0.97897 0.92049 1.21111 0.97083 0.94147 0.97759 1.21333 1.07609 0.96441 0.96662 1.19518 0.97648 0.85170 0.94090 1.86097 1.80089 1.24344 1.34314 1.23348 1.01023 0.99864 0.83425 1.17784 1.05995 0.90756 0.84191 1.84923 1.38824 1.71391 1.34898 1.20065 0.95934 0.92265 0.96231 1.18303 0.87643 0.95742 0.87313 0.92629 1.59920 1.49231 1.15886 1.13482 1.21583 1.05670 1.21809 1.06693 0.96280 1.25856 0.95602 0.98424 0.98583 1.70063 1.20165 1.45114 1.22991 0.85989 0.78403 0.79899 0.79594 1.18540 1.21869 1.16611 0.94781 0.92275 0.91255 0.92107 0.88259 0.82228 0.82086 0.92052 0.86557 0.91093 0.75613 0.84228 0.87080 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.89 71.98 0.71 -4.33 16 2 C -0.07 -2.35 5.46 29.85 0.16 -2.19 16 3 C -0.12 -4.29 5.13 -19.86 -0.10 -4.39 16 4 C -0.08 -2.39 9.67 22.28 0.22 -2.18 16 5 C -0.20 -5.76 9.04 22.35 0.20 -5.56 16 6 C 0.08 2.89 6.70 22.57 0.15 3.04 16 7 O -0.33 -10.78 10.28 -79.58 -0.82 -11.60 16 8 C 0.02 0.34 9.81 113.37 1.11 1.46 16 9 C 0.06 2.46 6.49 22.57 0.15 2.60 16 10 O -0.49 -21.15 10.91 -79.57 -0.87 -22.02 16 11 C -0.04 -1.90 4.90 -19.79 -0.10 -2.00 16 12 C 0.22 10.52 1.95 43.42 0.08 10.60 16 13 H 0.06 2.67 4.64 -2.39 -0.01 2.66 16 14 N -0.85 -37.26 9.03 -174.96 -1.58 -38.84 16 15 C -0.52 -30.13 8.23 25.60 0.21 -29.92 16 16 H 0.02 1.28 7.98 -2.91 -0.02 1.26 16 17 C 0.01 0.78 5.47 84.65 0.46 1.24 16 18 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 19 Si 0.94 43.85 24.61 68.60 1.69 45.54 16 20 H -0.26 -11.43 7.01 99.48 0.70 -10.74 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 23 H 0.03 1.48 7.03 -2.39 -0.02 1.46 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 2.10 6.16 -2.39 -0.01 2.08 16 27 H 0.10 2.35 8.05 -2.39 -0.02 2.33 16 28 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.16 3.25 6.30 -2.91 -0.02 3.23 16 30 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 31 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 33 H 0.39 13.31 7.81 -74.05 -0.58 12.73 16 34 H 0.34 14.59 5.21 -89.69 -0.47 14.13 16 35 H 0.31 13.84 4.30 -89.69 -0.39 13.46 16 36 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -73.96 285.79 1.62 -72.34 By element: Atomic # 1 Polarization: 45.98 SS G_CDS: -0.37 Total: 45.61 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 3.26 Total: -31.62 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -1.28 Total: -98.26 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.69 Total: -33.62 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.69 Total: 45.54 kcal Total: -73.96 1.62 -72.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.006 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds