Wall clock time and date at job start Mon Mar 30 2020 03:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47166 * 2 1 4 4 C 1.38193 * 119.97298 * 100.27600 * 3 2 1 5 5 C 1.38159 * 120.11070 * 180.23300 * 4 3 2 6 6 C 1.50699 * 119.97312 * 179.76989 * 5 4 3 7 7 H 1.09002 * 109.46959 * 219.72331 * 6 5 4 8 8 N 1.46901 * 109.47121 * 339.72572 * 6 5 4 9 9 C 1.53000 * 109.47083 * 99.72116 * 6 5 4 10 10 C 1.50698 * 109.46984 * 174.99834 * 9 6 5 11 11 H 1.08008 * 120.00253 * 0.02562 * 10 9 6 12 12 C 1.37881 * 120.00032 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99811 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99974 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47344 * 89.99767 * 14 12 10 16 16 H 1.48499 * 109.46707 * 209.99826 * 14 12 10 17 17 H 1.48500 * 109.47223 * 329.99502 * 14 12 10 18 18 C 1.38794 * 120.05182 * 359.49239 * 5 4 3 19 19 O 1.35895 * 120.02419 * 180.23012 * 18 5 4 20 20 C 1.38612 * 119.94271 * 0.25511 * 18 5 4 21 21 C 1.38649 * 119.89423 * 0.02562 * 20 18 5 22 22 O 1.35896 * 120.02703 * 180.02562 * 21 20 18 23 23 H 1.09000 * 109.47258 * 59.99241 * 1 2 3 24 24 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47265 * 299.99621 * 1 2 3 26 26 H 1.09005 * 109.46527 * 240.00309 * 2 1 3 27 27 H 1.08995 * 109.47181 * 120.00286 * 2 1 3 28 28 H 1.08002 * 119.94900 * 359.97438 * 4 3 2 29 29 H 1.00898 * 111.00245 * 59.99841 * 8 6 5 30 30 H 1.00904 * 111.00313 * 183.95658 * 8 6 5 31 31 H 1.08990 * 109.47170 * 295.00011 * 9 6 5 32 32 H 1.09001 * 109.46952 * 55.00087 * 9 6 5 33 33 H 0.96997 * 119.99784 * 180.02562 * 13 12 10 34 34 H 0.96704 * 113.99675 * 90.00081 * 19 18 5 35 35 H 1.08010 * 120.04896 * 179.97438 * 20 18 5 36 36 H 0.96711 * 114.00277 * 89.99455 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4638 2.0005 1.1779 5 6 2.9204 3.3045 1.1821 6 6 3.3853 3.9353 2.4693 7 1 3.0481 4.9711 2.5088 8 7 2.8260 3.1943 3.6077 9 6 4.9134 3.8936 2.5349 10 6 5.3838 4.6323 3.7612 11 1 4.6649 5.0858 4.4275 12 6 6.7322 4.7292 4.0328 13 7 7.6076 4.1765 3.2218 14 14 7.3153 5.6443 5.5533 15 1 7.4063 4.6994 6.6952 16 1 8.6521 6.2359 5.2926 17 1 6.3510 6.7251 5.8808 18 6 2.9566 4.0320 0.0006 19 8 3.4102 5.3130 0.0045 20 6 2.5293 3.4510 -1.1831 21 6 2.0661 2.1441 -1.1836 22 8 1.6469 1.5716 -2.3426 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.4402 1.4348 2.0976 29 1 3.1242 2.2305 3.5936 30 1 3.0703 3.6356 4.4816 31 1 5.2467 2.8571 2.5849 32 1 5.3283 4.3662 1.6446 33 1 8.5561 4.2444 3.4130 34 1 4.3618 5.3937 -0.1478 35 1 2.5563 4.0157 -2.1034 36 1 2.3457 1.1153 -2.8312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260070668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:13 Heat of formation + Delta-G solvation = -82.374402 kcal Electronic energy + Delta-G solvation = -18496.217394 eV Core-core repulsion = 15558.790790 eV Total energy + Delta-G solvation = -2937.426604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.08068 -37.81785 -36.11742 -35.01703 -33.13338 -32.39346 -29.38137 -28.48558 -27.80909 -24.47021 -23.53180 -22.32058 -21.09906 -19.49886 -18.73316 -16.91321 -16.62682 -16.27530 -15.37491 -15.02439 -14.63279 -14.44638 -13.93323 -13.56228 -13.35244 -13.26276 -12.80290 -12.45462 -12.27931 -12.17385 -11.74743 -11.37144 -11.24272 -11.02894 -10.84712 -10.68477 -10.40514 -10.21043 -10.17850 -9.94232 -9.20660 -8.52544 -8.42712 -8.11399 -7.62210 -6.13496 -4.17625 1.48129 1.58155 3.24035 3.31363 3.34732 3.73559 4.32421 4.35510 4.73557 4.98758 5.02383 5.16791 5.23661 5.34905 5.46936 5.63481 5.67520 5.86387 5.93161 6.05023 6.09777 6.19357 6.32889 6.41275 6.49298 6.67283 6.75585 6.95611 6.99976 7.36071 7.53122 7.74818 7.80505 8.00399 8.08198 8.16879 8.29392 8.88473 9.47944 10.97122 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.031894 B = 0.005401 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.710007 B = 5183.189458 C = 5559.145626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.119 4.119 4 C -0.079 4.079 5 C -0.080 4.080 6 C 0.128 3.872 7 H 0.085 0.915 8 N -0.841 5.841 9 C 0.005 3.995 10 C -0.524 4.524 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.119 3.881 19 O -0.494 6.494 20 C -0.171 4.171 21 C 0.100 3.900 22 O -0.496 6.496 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.327 0.673 30 H 0.347 0.653 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.393 0.607 35 H 0.128 0.872 36 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 -6.678 -7.919 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.120 4.120 4 C -0.097 4.097 5 C -0.081 4.081 6 C 0.017 3.983 7 H 0.103 0.897 8 N -0.370 5.370 9 C -0.033 4.033 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.074 3.926 19 O -0.305 6.305 20 C -0.190 4.190 21 C 0.056 3.944 22 O -0.305 6.305 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.250 0.750 35 H 0.146 0.854 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.248 -6.141 -7.987 14.371 hybrid contribution 2.549 0.164 0.747 2.661 sum -7.699 -5.976 -7.240 12.141 Atomic orbital electron populations 1.21716 0.94843 1.01136 1.02425 1.20323 0.96198 0.92301 1.02155 1.20151 1.01869 0.96836 0.93116 1.20673 0.97631 0.94412 0.97018 1.20574 0.97822 0.93791 0.95900 1.20415 0.95705 0.96494 0.85664 0.89710 1.59278 1.65417 1.06042 1.06235 1.19727 0.88751 0.97318 0.97500 1.21150 0.91835 1.34716 1.08507 0.92463 1.25007 0.96925 0.95504 0.96710 1.69960 1.01713 1.44417 1.37031 0.86574 0.78180 0.80084 0.83085 1.20646 1.21206 1.19746 1.18034 0.98895 0.84294 0.91380 1.84733 1.29120 1.22131 1.94524 1.21527 1.03561 0.95468 0.98451 1.17906 0.99749 0.91228 0.85510 1.84821 1.38319 1.73313 1.34056 0.92215 0.92907 0.92651 0.91529 0.91292 0.85047 0.86075 0.83899 0.96617 0.96585 0.92890 0.74956 0.85405 0.76306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.89 37.16 0.37 -1.27 16 2 C -0.07 -0.86 5.73 -27.88 -0.16 -1.02 16 3 C -0.12 -1.76 5.15 -104.45 -0.54 -2.30 16 4 C -0.08 -1.31 8.87 -39.63 -0.35 -1.66 16 5 C -0.08 -1.49 5.10 -104.45 -0.53 -2.02 16 6 C 0.13 2.64 2.64 -68.86 -0.18 2.46 16 7 H 0.08 1.88 7.85 -51.93 -0.41 1.48 16 8 N -0.84 -15.66 8.67 -5.65 -0.05 -15.71 16 9 C 0.01 0.13 4.60 -27.88 -0.13 0.00 16 10 C -0.52 -13.87 8.55 -34.44 -0.29 -14.16 16 11 H 0.06 1.48 7.15 -52.48 -0.37 1.10 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 14 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 C 0.12 2.12 6.67 -39.24 -0.26 1.86 16 19 O -0.49 -8.66 12.65 -19.41 -0.25 -8.91 16 20 C -0.17 -2.70 9.93 -39.29 -0.39 -3.09 16 21 C 0.10 1.48 6.67 -39.24 -0.26 1.22 16 22 O -0.50 -6.10 12.63 -19.41 -0.25 -6.34 16 23 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.70 7.85 -51.93 -0.41 0.30 16 27 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 28 H 0.13 2.05 6.21 -52.49 -0.33 1.73 16 29 H 0.33 5.73 7.28 -39.29 -0.29 5.44 16 30 H 0.35 6.59 7.90 -39.29 -0.31 6.28 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.41 7.62 -51.93 -0.40 0.01 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.39 5.78 8.62 45.56 0.39 6.17 16 35 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.38 2.94 9.06 45.56 0.41 3.36 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -30.68 303.73 -6.44 -37.12 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -3.36 Total: 16.73 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.83 Total: -18.43 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.69 Total: -40.63 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.49 Total: -15.25 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.68 -6.44 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.257 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds