Wall clock time and date at job start Mon Mar 30 2020 03:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41384 * 126.57753 * 2 1 4 4 C 1.34509 * 106.83881 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42428 * 359.74318 * 4 3 2 6 6 C 1.34309 * 109.47129 * 0.43327 * 5 4 3 7 7 C 1.50700 * 125.78909 * 179.82757 * 6 5 4 8 8 N 1.46899 * 109.46909 * 269.69667 * 7 6 5 9 9 C 1.47018 * 110.99949 * 293.62939 * 8 7 6 10 10 C 1.53091 * 109.26046 * 177.61119 * 9 8 7 11 11 O 1.43015 * 109.26132 * 56.85088 * 10 9 8 12 12 C 1.43019 * 113.73789 * 301.33167 * 11 10 9 13 13 C 1.47015 * 111.00025 * 170.00249 * 8 7 6 14 14 H 1.09002 * 109.50921 * 62.45295 * 13 8 7 15 15 C 1.50705 * 109.54016 * 302.34195 * 13 8 7 16 16 H 1.07996 * 119.99492 * 0.11326 * 15 13 8 17 17 C 1.37875 * 120.00165 * 180.10685 * 15 13 8 18 18 N 1.31520 * 119.99873 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00002 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47088 * 120.00499 * 19 17 15 22 22 H 1.48507 * 109.46955 * 240.00071 * 19 17 15 23 23 H 1.09000 * 109.46719 * 270.03650 * 1 2 3 24 24 H 1.08999 * 109.46959 * 30.03238 * 1 2 3 25 25 H 1.09004 * 109.47067 * 150.03824 * 1 2 3 26 26 H 1.07994 * 126.58309 * 359.97438 * 3 2 1 27 27 H 1.08001 * 125.79317 * 180.02562 * 4 3 2 28 28 H 1.08992 * 109.47108 * 149.69433 * 7 6 5 29 29 H 1.09001 * 109.46892 * 29.69068 * 7 6 5 30 30 H 1.09008 * 109.50418 * 57.67149 * 9 8 7 31 31 H 1.09001 * 109.50752 * 297.55225 * 9 8 7 32 32 H 1.09004 * 109.50597 * 296.91615 * 10 9 8 33 33 H 1.09002 * 109.50802 * 176.78885 * 10 9 8 34 34 H 1.09005 * 109.50538 * 298.73550 * 12 11 10 35 35 H 1.08997 * 109.54429 * 178.62382 * 12 11 10 36 36 H 0.96994 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0066 6 6 2.3086 -1.0802 0.0004 7 6 1.8522 -2.5164 0.0005 8 7 1.7045 -2.9833 -1.3845 9 6 0.6103 -2.2756 -2.0652 10 6 0.5302 -2.7486 -3.5189 11 8 0.3554 -4.1678 -3.5443 12 6 1.4035 -4.8887 -2.8907 13 6 1.4924 -4.4373 -1.4305 14 1 0.5646 -4.6863 -0.9154 15 6 2.6452 -5.1364 -0.7570 16 1 3.4543 -4.5592 -0.3347 17 6 2.6667 -6.5128 -0.6799 18 7 1.6814 -7.2157 -1.1946 19 14 4.0952 -7.3793 0.1555 20 1 5.0664 -6.3699 0.6485 21 1 3.5885 -8.1784 1.3000 22 1 4.7661 -8.2785 -0.8175 23 1 -0.3633 0.0007 1.0277 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8904 -0.5133 26 1 2.0367 2.1690 -0.0004 27 1 4.5060 1.2923 0.0011 28 1 0.8938 -2.5930 0.5139 29 1 2.5902 -3.1321 0.5147 30 1 0.8006 -1.2025 -2.0414 31 1 -0.3316 -2.4900 -1.5602 32 1 1.4518 -2.4860 -4.0384 33 1 -0.3154 -2.2688 -4.0118 34 1 2.3505 -4.6884 -3.3919 35 1 1.1902 -5.9569 -2.9291 36 1 1.6967 -8.1841 -1.1407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260084416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:00 Heat of formation + Delta-G solvation = -21.934219 kcal Electronic energy + Delta-G solvation = -19238.985349 eV Core-core repulsion = 16304.179628 eV Total energy + Delta-G solvation = -2934.805721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.26331 -38.61274 -35.30037 -33.81482 -32.96040 -30.40930 -29.92714 -28.27761 -26.14337 -25.24118 -23.27880 -22.33084 -21.05893 -19.51070 -19.06497 -16.85774 -16.52652 -15.95844 -15.25568 -15.11205 -14.62373 -14.25223 -14.06993 -13.65550 -13.58070 -12.98429 -12.82850 -12.68214 -12.32611 -12.13606 -11.95794 -11.59537 -11.26722 -11.02668 -10.75814 -10.61463 -10.36384 -10.16526 -9.71086 -9.34471 -9.16486 -8.76033 -8.44826 -8.02798 -7.36836 -6.16713 -4.21443 2.06726 2.82976 3.24076 3.32616 3.37351 3.39202 4.31069 4.78112 4.91338 5.03198 5.14659 5.18766 5.28577 5.62156 5.67038 5.73020 5.79837 5.85951 5.90335 6.06706 6.13228 6.23256 6.29342 6.32211 6.42616 6.52307 6.65898 6.79428 6.90580 7.20636 7.42076 7.55269 7.64013 7.79717 8.09032 8.12826 8.46194 8.85625 9.44568 10.91216 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.007887 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.533079 B = 3549.382420 C = 4473.008772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.196 4.196 3 C -0.212 4.212 4 C -0.054 4.054 5 O -0.166 6.166 6 C 0.024 3.976 7 C 0.133 3.867 8 N -0.527 5.527 9 C 0.013 3.987 10 C 0.067 3.933 11 O -0.403 6.403 12 C 0.070 3.930 13 C 0.189 3.811 14 H 0.012 0.988 15 C -0.513 4.513 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.901 3.099 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.141 0.859 27 H 0.196 0.804 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.125 0.875 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 12.610 1.176 12.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.198 4.198 3 C -0.231 4.231 4 C -0.122 4.122 5 O -0.061 6.061 6 C -0.027 4.027 7 C 0.006 3.994 8 N -0.254 5.254 9 C -0.115 4.115 10 C -0.010 4.010 11 O -0.323 6.323 12 C -0.006 4.006 13 C 0.083 3.917 14 H 0.029 0.971 15 C -0.551 4.551 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.208 1.208 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.159 0.841 27 H 0.213 0.787 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.142 0.858 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.317 12.204 0.816 12.236 hybrid contribution 0.214 -0.175 0.988 1.026 sum -0.103 12.030 1.804 12.165 Atomic orbital electron populations 1.20357 0.89754 1.02716 1.01746 1.20171 0.96872 0.92142 1.10636 1.21591 0.92770 0.99337 1.09419 1.23867 0.99390 0.81280 1.07635 1.84080 1.29298 1.22094 1.70591 1.22590 0.80378 0.96787 1.02949 1.20463 1.00485 0.86385 0.92116 1.62227 1.41999 1.07911 1.13214 1.22957 0.93174 0.99106 0.96295 1.22439 1.00277 0.83531 0.94787 1.87910 1.49466 1.16498 1.78393 1.23135 0.87779 0.97915 0.91813 1.19889 0.96945 0.80589 0.94271 0.97068 1.21115 1.06108 0.91114 1.36747 0.91305 1.24979 0.96270 0.97423 0.95374 1.69849 1.31330 1.06714 1.45116 0.86387 0.82124 0.79535 0.79144 1.19574 1.20951 1.20817 0.92070 0.92001 0.90992 0.84137 0.78735 0.92650 0.87496 0.90649 0.94981 0.93544 0.90238 0.94732 0.85775 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.41 36.01 0.34 -0.84 16 2 C -0.20 -3.07 5.22 -104.74 -0.55 -3.62 16 3 C -0.21 -2.93 10.87 -39.70 -0.43 -3.36 16 4 C -0.05 -0.75 12.09 29.41 0.36 -0.39 16 5 O -0.17 -2.96 10.65 5.68 0.06 -2.90 16 6 C 0.02 0.44 6.24 -35.63 -0.22 0.22 16 7 C 0.13 2.64 4.99 -4.98 -0.02 2.62 16 8 N -0.53 -11.46 4.52 -229.16 -1.04 -12.49 16 9 C 0.01 0.25 4.07 -3.71 -0.02 0.23 16 10 C 0.07 1.27 7.01 37.20 0.26 1.53 16 11 O -0.40 -9.23 10.83 -35.23 -0.38 -9.61 16 12 C 0.07 1.73 6.02 37.21 0.22 1.95 16 13 C 0.19 4.72 1.97 -68.75 -0.14 4.59 16 14 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 15 C -0.51 -13.59 7.81 -34.44 -0.27 -13.86 16 16 H 0.07 1.83 6.57 -52.49 -0.34 1.49 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.60 11.36 55.43 0.63 -23.97 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.01 4.67 -51.93 -0.24 0.77 16 26 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.06 1.05 7.74 -51.93 -0.40 0.65 16 29 H 0.11 2.29 6.05 -51.93 -0.31 1.97 16 30 H 0.08 1.30 5.43 -51.92 -0.28 1.02 16 31 H 0.03 0.61 7.23 -51.93 -0.38 0.23 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 3.34 6.17 -51.93 -0.32 3.02 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 286.35 15.07 4.32 4.32 Total: -1.00 -28.95 286.35 -6.79 -35.74 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.80 Total: 2.57 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.56 Total: -9.38 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.41 Total: -36.46 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.32 Total: -12.51 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.95 -6.79 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260084416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.804 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds