Wall clock time and date at job start Mon Mar 30 2020 03:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41384 * 126.57753 * 2 1 4 4 C 1.34509 * 106.83881 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42428 * 359.74318 * 4 3 2 6 6 C 1.34309 * 109.47129 * 0.43327 * 5 4 3 7 7 C 1.50700 * 125.78909 * 179.82757 * 6 5 4 8 8 N 1.46899 * 109.46909 * 269.69667 * 7 6 5 9 9 C 1.47018 * 110.99949 * 293.62939 * 8 7 6 10 10 C 1.53091 * 109.26046 * 177.61119 * 9 8 7 11 11 O 1.43015 * 109.26132 * 56.85088 * 10 9 8 12 12 C 1.43019 * 113.73789 * 301.33167 * 11 10 9 13 13 C 1.47015 * 111.00025 * 170.00249 * 8 7 6 14 14 H 1.09002 * 109.50921 * 62.45295 * 13 8 7 15 15 C 1.50705 * 109.54016 * 302.34195 * 13 8 7 16 16 H 1.07996 * 119.99492 * 0.11326 * 15 13 8 17 17 C 1.37875 * 120.00165 * 180.10685 * 15 13 8 18 18 N 1.31520 * 119.99873 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00002 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47088 * 120.00499 * 19 17 15 22 22 H 1.48507 * 109.46955 * 240.00071 * 19 17 15 23 23 H 1.09000 * 109.46719 * 270.03650 * 1 2 3 24 24 H 1.08999 * 109.46959 * 30.03238 * 1 2 3 25 25 H 1.09004 * 109.47067 * 150.03824 * 1 2 3 26 26 H 1.07994 * 126.58309 * 359.97438 * 3 2 1 27 27 H 1.08001 * 125.79317 * 180.02562 * 4 3 2 28 28 H 1.08992 * 109.47108 * 149.69433 * 7 6 5 29 29 H 1.09001 * 109.46892 * 29.69068 * 7 6 5 30 30 H 1.09008 * 109.50418 * 57.67149 * 9 8 7 31 31 H 1.09001 * 109.50752 * 297.55225 * 9 8 7 32 32 H 1.09004 * 109.50597 * 296.91615 * 10 9 8 33 33 H 1.09002 * 109.50802 * 176.78885 * 10 9 8 34 34 H 1.09005 * 109.50538 * 298.73550 * 12 11 10 35 35 H 1.08997 * 109.54429 * 178.62382 * 12 11 10 36 36 H 0.96994 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0066 6 6 2.3086 -1.0802 0.0004 7 6 1.8522 -2.5164 0.0005 8 7 1.7045 -2.9833 -1.3845 9 6 0.6103 -2.2756 -2.0652 10 6 0.5302 -2.7486 -3.5189 11 8 0.3554 -4.1678 -3.5443 12 6 1.4035 -4.8887 -2.8907 13 6 1.4924 -4.4373 -1.4305 14 1 0.5646 -4.6863 -0.9154 15 6 2.6452 -5.1364 -0.7570 16 1 3.4543 -4.5592 -0.3347 17 6 2.6667 -6.5128 -0.6799 18 7 1.6814 -7.2157 -1.1946 19 14 4.0952 -7.3793 0.1555 20 1 5.0664 -6.3699 0.6485 21 1 3.5885 -8.1784 1.3000 22 1 4.7661 -8.2785 -0.8175 23 1 -0.3633 0.0007 1.0277 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8904 -0.5133 26 1 2.0367 2.1690 -0.0004 27 1 4.5060 1.2923 0.0011 28 1 0.8938 -2.5930 0.5139 29 1 2.5902 -3.1321 0.5147 30 1 0.8006 -1.2025 -2.0414 31 1 -0.3316 -2.4900 -1.5602 32 1 1.4518 -2.4860 -4.0384 33 1 -0.3154 -2.2688 -4.0118 34 1 2.3505 -4.6884 -3.3919 35 1 1.1902 -5.9569 -2.9291 36 1 1.6967 -8.1841 -1.1407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260084416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:00 Heat of formation + Delta-G solvation = -41.577772 kcal Electronic energy + Delta-G solvation = -19239.837157 eV Core-core repulsion = 16304.179628 eV Total energy + Delta-G solvation = -2935.657530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.47326 -40.35718 -36.97064 -35.38774 -34.61006 -31.82390 -31.63136 -29.64201 -27.70326 -27.04253 -24.85078 -24.07770 -22.23610 -21.18805 -20.40946 -18.72144 -17.84255 -17.59881 -16.90047 -16.71005 -16.32227 -15.83163 -15.70535 -15.36663 -14.99098 -14.62693 -14.17560 -13.95780 -13.74878 -13.48314 -13.31480 -13.09553 -12.91109 -12.78162 -12.54589 -12.31023 -12.06052 -11.95608 -11.49042 -11.07593 -10.73309 -10.45813 -10.33141 -9.33699 -9.04972 -8.21676 -6.33609 0.84436 1.39975 1.42444 1.54418 1.71006 2.21324 2.37798 3.03045 3.12148 3.33491 3.87404 4.04155 4.09819 4.16350 4.26247 4.31576 4.40830 4.55868 4.66102 4.68445 4.78233 4.81297 4.85878 4.89133 4.95403 5.02868 5.22271 5.26286 5.36300 5.46319 5.61303 5.75628 5.91384 6.16332 6.30875 6.40343 6.58653 6.79226 7.36065 8.86060 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.007887 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.533079 B = 3549.382420 C = 4473.008772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.184 4.184 3 C -0.217 4.217 4 C -0.046 4.046 5 O -0.195 6.195 6 C -0.019 4.019 7 C 0.141 3.859 8 N -0.537 5.537 9 C 0.019 3.981 10 C 0.060 3.940 11 O -0.416 6.416 12 C 0.083 3.917 13 C 0.197 3.803 14 H -0.025 1.025 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.018 3.982 18 N -0.918 5.918 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.277 1.277 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.174 0.826 27 H 0.236 0.764 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.032 0.968 32 H 0.049 0.951 33 H 0.121 0.879 34 H 0.026 0.974 35 H 0.099 0.901 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 15.025 1.250 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.186 4.186 3 C -0.236 4.236 4 C -0.113 4.113 5 O -0.091 6.091 6 C -0.069 4.069 7 C 0.014 3.986 8 N -0.263 5.263 9 C -0.109 4.109 10 C -0.017 4.017 11 O -0.335 6.335 12 C 0.006 3.994 13 C 0.090 3.910 14 H -0.007 1.007 15 C -0.564 4.564 16 H 0.079 0.921 17 C -0.182 4.182 18 N -0.557 5.557 19 Si 0.789 3.211 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.203 1.203 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.191 0.809 27 H 0.253 0.747 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.138 0.862 34 H 0.044 0.956 35 H 0.117 0.883 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.057 14.642 0.888 14.669 hybrid contribution 0.109 -0.773 0.965 1.241 sum 0.052 13.868 1.853 13.992 Atomic orbital electron populations 1.20438 0.88234 1.03335 1.02705 1.20556 0.98004 0.92026 1.08000 1.21980 0.92217 1.00300 1.09069 1.24800 1.01340 0.79937 1.05244 1.84041 1.29384 1.24281 1.71420 1.22204 0.81260 0.96096 1.07359 1.20211 0.99807 0.87832 0.90791 1.62189 1.43275 1.06069 1.14751 1.22996 0.92226 0.99853 0.95860 1.22794 1.02303 0.81358 0.95229 1.87868 1.48707 1.18864 1.78082 1.22745 0.87785 0.96989 0.91872 1.19612 0.94721 0.82940 0.93683 1.00706 1.21301 1.06390 0.91627 1.37096 0.92071 1.25735 0.98585 0.98023 0.95857 1.69966 1.32850 1.06994 1.45883 0.85411 0.79134 0.78321 0.78242 1.19368 1.20356 1.20256 0.90964 0.89503 0.92136 0.80863 0.74738 0.92567 0.90224 0.88492 0.95023 0.93285 0.86151 0.95550 0.88348 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 9.41 71.24 0.67 -1.49 16 2 C -0.18 -5.33 5.22 -19.94 -0.10 -5.43 16 3 C -0.22 -5.20 10.87 22.19 0.24 -4.96 16 4 C -0.05 -1.15 12.09 66.97 0.81 -0.34 16 5 O -0.19 -6.80 10.65 -2.58 -0.03 -6.83 16 6 C -0.02 -0.67 6.24 24.83 0.15 -0.52 16 7 C 0.14 5.77 4.99 85.56 0.43 6.20 16 8 N -0.54 -23.78 4.52 -878.92 -3.97 -27.76 16 9 C 0.02 0.69 4.07 86.31 0.35 1.04 16 10 C 0.06 2.18 7.01 72.01 0.50 2.68 16 11 O -0.42 -19.11 10.83 -148.98 -1.61 -20.72 16 12 C 0.08 4.26 6.02 72.02 0.43 4.69 16 13 C 0.20 10.26 1.97 44.18 0.09 10.35 16 14 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 15 C -0.53 -28.93 7.81 25.60 0.20 -28.73 16 16 H 0.06 3.39 6.57 -2.91 -0.02 3.37 16 17 C 0.02 0.97 5.30 84.65 0.45 1.42 16 18 N -0.92 -52.14 11.36 21.45 0.24 -51.89 16 19 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.59 4.67 -2.38 -0.01 1.58 16 26 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.24 3.53 8.06 -2.91 -0.02 3.50 16 28 H 0.06 2.22 7.74 -2.39 -0.02 2.20 16 29 H 0.08 3.61 6.05 -2.39 -0.01 3.60 16 30 H 0.10 3.16 5.43 -2.38 -0.01 3.15 16 31 H 0.03 1.18 7.23 -2.39 -0.02 1.16 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.10 5.54 6.17 -2.39 -0.01 5.53 16 36 H 0.27 14.32 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -64.28 286.35 1.96 -62.32 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.08 Total: 14.64 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 4.22 Total: -15.10 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -3.73 Total: -79.65 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -1.64 Total: -27.55 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.28 1.96 -62.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260084416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.746 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds