Wall clock time and date at job start Mon Mar 30 2020 04:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35998 * 116.99860 * 2 1 4 4 C 1.38566 * 120.07272 * 359.97438 * 3 2 1 5 5 C 1.38234 * 119.99993 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.14940 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.14249 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99818 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47033 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46959 * 300.00089 * 8 7 6 11 11 C 1.52999 * 109.47091 * 59.99761 * 8 7 6 12 12 H 1.08998 * 109.47610 * 300.00170 * 11 8 7 13 13 N 1.46899 * 109.47071 * 60.00094 * 11 8 7 14 14 C 1.50701 * 109.47091 * 179.97438 * 11 8 7 15 15 H 1.08000 * 120.00113 * 359.97438 * 14 11 8 16 16 C 1.37881 * 119.99844 * 180.02562 * 14 11 8 17 17 N 1.31514 * 120.00112 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99687 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47160 * 90.00119 * 18 16 14 20 20 H 1.48499 * 109.47270 * 209.99856 * 18 16 14 21 21 H 1.48495 * 109.47251 * 330.00125 * 18 16 14 22 22 C 1.38561 * 120.00240 * 0.02562 * 7 6 5 23 23 O 1.35987 * 120.07453 * 180.02562 * 22 7 6 24 24 H 1.08990 * 109.47690 * 60.00392 * 1 2 3 25 25 H 1.09000 * 109.46784 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47483 * 299.99541 * 1 2 3 27 27 H 1.08006 * 119.99637 * 0.02562 * 4 3 2 28 28 H 1.08008 * 119.92628 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.92916 * 180.27532 * 6 5 4 30 30 H 1.09005 * 109.47194 * 299.99852 * 10 8 7 31 31 H 1.08998 * 109.47547 * 59.99955 * 10 8 7 32 32 H 1.09005 * 109.47069 * 179.97438 * 10 8 7 33 33 H 1.00902 * 110.99918 * 59.99887 * 13 11 8 34 34 H 1.00898 * 111.00192 * 183.95165 * 13 11 8 35 35 H 0.96994 * 119.99905 * 180.02562 * 17 16 14 36 36 H 0.96699 * 114.00742 * 89.99657 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9222 3.6057 -0.0011 6 6 3.3028 3.6800 -0.0016 7 6 4.0602 2.5234 -0.0011 8 6 5.5648 2.6081 -0.0022 9 1 5.9853 1.6025 -0.0021 10 6 6.0325 3.3558 -1.2525 11 6 6.0343 3.3581 1.2459 12 1 5.6138 4.3637 1.2453 13 7 5.5852 2.6404 2.4464 14 6 7.5390 3.4423 1.2451 15 1 8.1039 3.0043 0.4355 16 6 8.1945 4.0776 2.2784 17 7 7.5067 4.6097 3.2650 18 14 10.0596 4.1813 2.2777 19 1 10.4863 5.4188 1.5764 20 1 10.5544 4.2100 3.6775 21 1 10.6209 2.9976 1.5785 22 6 3.4359 1.2864 -0.0005 23 8 4.1795 0.1479 0.0005 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2144 2.3196 -0.0005 28 1 1.3339 4.5115 -0.0019 29 1 3.7906 4.6435 0.0025 30 1 5.6980 2.8215 -2.1418 31 1 5.6120 4.3614 -1.2532 32 1 7.1208 3.4175 -1.2532 33 1 5.9620 1.7046 2.4703 34 1 5.8271 3.1490 3.2835 35 1 7.9678 5.0569 3.9918 36 1 4.3943 -0.1809 0.8842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:12 Heat of formation + Delta-G solvation = -67.989112 kcal Electronic energy + Delta-G solvation = -18834.237626 eV Core-core repulsion = 15897.434815 eV Total energy + Delta-G solvation = -2936.802811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08979 -37.91724 -36.14704 -35.31793 -32.45320 -30.29855 -29.32515 -28.57926 -27.05506 -25.53847 -23.51963 -22.07729 -21.49404 -19.19362 -17.99651 -16.87530 -16.63499 -15.93049 -15.65196 -14.95212 -14.76100 -14.29625 -13.86442 -13.66959 -13.44005 -13.01116 -12.61050 -12.29206 -11.95338 -11.77000 -11.43574 -11.22824 -11.07399 -10.90988 -10.82156 -10.67432 -10.41603 -10.20550 -10.07296 -9.53142 -9.36301 -8.55282 -8.00404 -7.70435 -7.12716 -6.03875 -4.19188 1.72937 1.86912 3.23965 3.31632 3.34758 3.46457 4.09413 4.35739 4.76134 5.03265 5.17700 5.18506 5.24649 5.39510 5.47076 5.68154 5.80876 5.84344 6.05245 6.20154 6.32133 6.48658 6.56971 6.72166 6.75788 6.87341 6.99976 7.11468 7.14110 7.23656 7.55485 7.75598 7.80029 8.19184 8.24388 8.75578 9.01173 9.18762 9.52424 10.93865 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.037470 B = 0.005617 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.084684 B = 4983.891544 C = 5067.437792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.095 3.905 4 C -0.216 4.216 5 C -0.092 4.092 6 C -0.131 4.131 7 C -0.012 4.012 8 C -0.046 4.046 9 H 0.072 0.928 10 C -0.128 4.128 11 C 0.223 3.777 12 H 0.037 0.963 13 N -0.851 5.851 14 C -0.546 4.546 15 H 0.057 0.943 16 C 0.065 3.935 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.073 3.927 23 O -0.487 6.487 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.307 0.693 34 H 0.353 0.647 35 H 0.263 0.737 36 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 -4.800 -5.012 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.050 3.950 4 C -0.235 4.235 5 C -0.110 4.110 6 C -0.149 4.149 7 C -0.013 4.013 8 C -0.065 4.065 9 H 0.090 0.910 10 C -0.186 4.186 11 C 0.113 3.887 12 H 0.055 0.945 13 N -0.380 5.380 14 C -0.586 4.586 15 H 0.075 0.925 16 C -0.137 4.137 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.028 3.972 23 O -0.295 6.295 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.168 0.832 35 H 0.073 0.927 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.093 -4.724 -5.745 14.197 hybrid contribution 1.823 0.239 0.959 2.074 sum -10.269 -4.484 -4.786 12.185 Atomic orbital electron populations 1.22970 0.79425 1.03273 1.01005 1.86117 1.20454 1.26915 1.89168 1.19398 0.91713 0.84375 0.99514 1.20907 0.99182 0.92143 1.11236 1.20833 0.94680 0.96518 0.98944 1.20844 0.93025 0.98437 1.02637 1.20171 0.97304 0.90759 0.93019 1.20259 0.87904 1.00965 0.97402 0.90954 1.21686 1.02116 0.99214 0.95592 1.18927 0.91994 0.92577 0.85187 0.94476 1.59492 1.65200 1.05552 1.07722 1.21999 0.93195 1.36200 1.07165 0.92526 1.25010 0.98341 0.94767 0.95589 1.69747 1.35356 1.37559 1.10784 0.86606 0.85803 0.78484 0.77152 1.20662 1.21319 1.19941 1.17524 0.85548 0.86527 1.07594 1.84802 1.71939 1.39675 1.33117 0.93077 0.88765 0.92977 0.86087 0.86326 0.85730 0.94537 0.93319 0.91431 0.88503 0.83185 0.92686 0.76263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.86 10.28 -34.24 -0.35 -5.22 16 3 C 0.10 1.62 6.70 -39.12 -0.26 1.36 16 4 C -0.22 -3.26 9.04 -39.46 -0.36 -3.62 16 5 C -0.09 -1.42 10.04 -39.58 -0.40 -1.82 16 6 C -0.13 -2.36 8.71 -39.57 -0.34 -2.71 16 7 C -0.01 -0.23 4.39 -104.50 -0.46 -0.69 16 8 C -0.05 -0.96 2.23 -91.77 -0.20 -1.16 16 9 H 0.07 1.55 6.99 -51.93 -0.36 1.19 16 10 C -0.13 -2.47 8.75 37.16 0.33 -2.15 16 11 C 0.22 5.33 2.12 -68.86 -0.15 5.18 16 12 H 0.04 0.99 7.38 -51.93 -0.38 0.60 16 13 N -0.85 -19.73 8.77 -5.65 -0.05 -19.78 16 14 C -0.55 -14.22 7.99 -34.44 -0.28 -14.50 16 15 H 0.06 1.48 6.71 -52.49 -0.35 1.12 16 16 C 0.06 1.72 5.38 -17.82 -0.10 1.63 16 17 N -0.89 -24.53 11.54 55.43 0.64 -23.89 16 18 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.07 1.37 6.69 -39.12 -0.26 1.11 16 23 O -0.49 -8.72 12.05 -34.20 -0.41 -9.13 16 24 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 27 H 0.12 1.47 6.30 -52.48 -0.33 1.13 16 28 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.12 2.24 7.10 -52.49 -0.37 1.87 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.90 7.39 -51.93 -0.38 0.51 16 32 H 0.07 1.35 6.62 -51.93 -0.34 1.00 16 33 H 0.31 6.82 8.99 -39.29 -0.35 6.46 16 34 H 0.35 8.92 7.07 -39.29 -0.28 8.65 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 36 H 0.38 5.64 9.06 45.56 0.41 6.06 16 LS Contribution 296.95 15.07 4.47 4.47 Total: -1.00 -29.11 296.95 -6.15 -35.26 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -3.95 Total: 18.61 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.49 Total: -16.08 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.59 Total: -43.67 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.76 Total: -14.35 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.11 -6.15 -35.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.731 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds